Cow genome map
| Conread name: | Ss1.1-Utr2-C0001815_L04.5 |
| Conread position: | 231-575 |
| Cow position: | chr27:16032138-16031802 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 18 |
| Conread position: | 232-371 |
| Cow position: | chr27:66553-66415 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 232-374 |
| Cow position: | chr27:28686284-28686142 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 123, 17 |
| Conread position: | 232-521 |
| Cow position: | chr27:4981634-4981921 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-562 |
| Cow position: | chr27:5913189-5913524 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 112, 17 |
| Conread position: | 232-562 |
| Cow position: | chr27:21284940-21284614 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 232-563 |
| Cow position: | chr27:24296991-24296658 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 17 |
| Conread position: | 232-563 |
| Cow position: | chr27:27194087-27193768 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 161, 17 |
| Conread position: | 232-563 |
| Cow position: | chr27:27288751-27289084 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 232-564 |
| Cow position: | chr27:30571077-30571405 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 10 |
| Conread position: | 232-566 |
| Cow position: | chr27:22743129-22742800 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-566 |
| Cow position: | chr27:22798196-22797864 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-566 |
| Cow position: | chr27:23446456-23446147 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 308, 19 |
| Conread position: | 232-567 |
| Cow position: | chr27:25801923-25801585 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-575 |
| Cow position: | chr27:12263171-12262844 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 11 |
| Conread position: | 232-575 |
| Cow position: | chr27:27730212-27729878 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 157, 17 |
| Conread position: | 232-576 |
| Cow position: | chr27:1535444-1535781 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 17 |
| Conread position: | 232-576 |
| Cow position: | chr27:3991259-3991610 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 232-576 |
| Cow position: | chr27:8200062-8200403 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-576 |
| Cow position: | chr27:9331997-9332343 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 17 |
| Conread position: | 232-576 |
| Cow position: | chr27:9990954-9990610 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 232-576 |
| Cow position: | chr27:13900156-13900493 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 232-576 |
| Cow position: | chr27:19524462-19524116 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-576 |
| Cow position: | chr27:22013108-22012762 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 239 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 6, 18 |
| Conread position: | 232-576 |
| Cow position: | chr27:26327316-26327658 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 17 |
| Conread position: | 235-343 |
| Cow position: | chr27:1211624-1211731 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 235-560 |
| Cow position: | chr27:15374092-15374409 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 143, 14 |
| Conread position: | 235-560 |
| Cow position: | chr27:28294603-28294281 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 14 |
| Conread position: | 235-563 |
| Cow position: | chr27:10378190-10378516 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 7 |
| Conread position: | 235-564 |
| Cow position: | chr27:30034421-30034752 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 14 |
| Conread position: | 235-575 |
| Cow position: | chr27:26599197-26599524 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 155, 7 |
| Conread position: | 236-534 |
| Cow position: | chr27:166656-166359 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 153, 13 |
| Conread position: | 236-556 |
| Cow position: | chr27:3233264-3232945 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 13 |
| Conread position: | 236-566 |
| Cow position: | chr27:3995634-3995309 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 13 |
| Conread position: | 236-575 |
| Cow position: | chr27:28894266-28894621 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 236-576 |
| Cow position: | chr27:8591322-8591666 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 142, 13 |
| Conread position: | 236-576 |
| Cow position: | chr27:12749290-12749629 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 13 |
| Conread position: | 236-576 |
| Cow position: | chr27:20809669-20810010 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 13 |
| Conread position: | 236-576 |
| Cow position: | chr27:27665263-27665602 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 237-566 |
| Cow position: | chr27:797349-797021 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 12 |
| Conread position: | 238-576 |
| Cow position: | chr27:15273814-15273477 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 92, 63 |
| Conread position: | 246-411 |
| Cow position: | chr27:5985128-5985294 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 247-561 |
| Cow position: | chr27:1847108-1846795 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 124, 173 |
| Conread position: | 247-563 |
| Cow position: | chr27:8260933-8261243 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 161, 16 |
| Conread position: | 247-563 |
| Cow position: | chr27:31267504-31267818 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 146, 63 |
| Conread position: | 247-564 |
| Cow position: | chr27:17567400-17567696 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 248-576 |
| Cow position: | chr27:15635063-15634736 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 92 |
| Conread position: | 248-576 |
| Cow position: | chr27:22822137-22821819 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 161, 62 |
| Conread position: | 249-576 |
| Cow position: | chr27:15034827-15034496 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 250-562 |
| Cow position: | chr27:23201557-23201245 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 139, 54 |
| Conread position: | 255-576 |
| Cow position: | chr27:11433406-11433719 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 93, 44 |
| Conread position: | 255-576 |
| Cow position: | chr27:23318641-23318325 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 141, 24 |
| Conread position: | 256-456 |
| Cow position: | chr27:15332123-15332318 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 151, 45 |
| Conread position: | 256-566 |
| Cow position: | chr27:15874778-15874462 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 37, 94 |
| Conread position: | 278-552 |
| Cow position: | chr27:28012203-28012480 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 112, 44 |
| Conread position: | 279-567 |
| Cow position: | chr27:24114453-24114739 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 29 |
| Conread position: | 288-566 |
| Cow position: | chr27:2379694-2379953 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 235, 34 |
| Conread position: | 291-463 |
| Cow position: | chr27:25358364-25358190 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 293-575 |
| Cow position: | chr27:11679683-11679404 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 299-575 |
| Cow position: | chr27:13352613-13352892 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 97, 186 |
| Conread position: | 305-529 |
| Cow position: | chr27:11488019-11488245 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 5 |
| Conread position: | 305-575 |
| Cow position: | chr27:1676211-1675936 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 73, 86 |
| Conread position: | 308-575 |
| Cow position: | chr27:1905229-1904965 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 19, 120 |
| Conread position: | 310-567 |
| Cow position: | chr27:18696668-18696928 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 311-575 |
| Cow position: | chr27:21496706-21496967 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 36 |
| Conread position: | 333-566 |
| Cow position: | chr27:12147293-12147057 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 335-566 |
| Cow position: | chr27:1520033-1520267 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 336-563 |
| Cow position: | chr27:4332371-4332141 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 359-576 |
| Cow position: | chr27:22151669-22151882 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 37, 129 |
| Conread position: | 365-560 |
| Cow position: | chr27:19690968-19690770 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 365-575 |
| Cow position: | chr27:22734099-22733887 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 31, 126 |
| Conread position: | 375-563 |
| Cow position: | chr27:10003431-10003247 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 140, 47 |
| Conread position: | 395-575 |
| Cow position: | chr27:1031255-1031437 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 397-564 |
| Cow position: | chr27:24573521-24573356 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 64 |
| Conread position: | 407-565 |
| Cow position: | chr27:26855490-26855648 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-575 |
| Cow position: | chr27:29858907-29859073 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 146, 113 |
| Conread position: | 408-566 |
| Cow position: | chr27:25797773-25797931 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-562 |
| Cow position: | chr27:25965516-25965365 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 416-566 |
| Cow position: | chr27:17404426-17404276 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 416-575 |
| Cow position: | chr27:28923441-28923602 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 82, 29 |
| Conread position: | 427-575 |
| Cow position: | chr27:1082436-1082583 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.