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Cow genome map

           
Conread name:
           
Ss1.1-Utr2-C0001815_L04.5
        

               
Conread position:
               
217-566
               

               
Cow position:
               
chr9:48796152-48795802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 20
               

               
Conread position:
               
231-392
               

               
Cow position:
               
chr9:10746518-10746358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
83, 6
               

               
Conread position:
               
231-483
               

               
Cow position:
               
chr9:25819216-25818967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
158, 18
               

               
Conread position:
               
231-566
               

               
Cow position:
               
chr9:9367163-9367480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
165, 18
               

               
Conread position:
               
231-576
               

               
Cow position:
               
chr9:5006133-5006477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 18
               

               
Conread position:
               
232-375
               

               
Cow position:
               
chr9:24422795-24422652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
232-391
               

               
Cow position:
               
chr9:10644221-10644379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
232-418
               

               
Cow position:
               
chr9:18834170-18833990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
159, 23
               

               
Conread position:
               
232-433
               

               
Cow position:
               
chr9:129036-128833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-434
               

               
Cow position:
               
chr9:59538259-59538463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
145, 17
               

               
Conread position:
               
232-456
               

               
Cow position:
               
chr9:6708901-6708675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-463
               

               
Cow position:
               
chr9:23420769-23420990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
156, 17
               

               
Conread position:
               
232-491
               

               
Cow position:
               
chr9:46041104-46040838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
140, 17
               

               
Conread position:
               
232-500
               

               
Cow position:
               
chr9:18023108-18023364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
158, 18
               

               
Conread position:
               
232-503
               

               
Cow position:
               
chr9:14535190-14535461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
159, 115
               

               
Conread position:
               
232-511
               

               
Cow position:
               
chr9:20181260-20180988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-524
               

               
Cow position:
               
chr9:26122996-26123284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-536
               

               
Cow position:
               
chr9:42311850-42312153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-542
               

               
Cow position:
               
chr9:4648470-4648163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
149, 11
               

               
Conread position:
               
232-550
               

               
Cow position:
               
chr9:29043410-29043094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
232-552
               

               
Cow position:
               
chr9:9515224-9515533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
232-558
               

               
Cow position:
               
chr9:2630757-2631083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-558
               

               
Cow position:
               
chr9:60324827-60324500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
120, 8
               

               
Conread position:
               
232-561
               

               
Cow position:
               
chr9:47044125-47044456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-562
               

               
Cow position:
               
chr9:59196013-59196341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
232-563
               

               
Cow position:
               
chr9:2213302-2213633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
232-563
               

               
Cow position:
               
chr9:2680729-2681062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 17
               

               
Conread position:
               
232-563
               

               
Cow position:
               
chr9:27487705-27487386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
232-563
               

               
Cow position:
               
chr9:30674225-30674558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-563
               

               
Cow position:
               
chr9:35681565-35681896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-563
               

               
Cow position:
               
chr9:39729410-39729097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
91, 10
               

               
Conread position:
               
232-563
               

               
Cow position:
               
chr9:47004896-47005230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-563
               

               
Cow position:
               
chr9:51180017-51179684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-564
               

               
Cow position:
               
chr9:792153-791823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
160, 17
               

               
Conread position:
               
232-564
               

               
Cow position:
               
chr9:1729152-1728816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
232-564
               

               
Cow position:
               
chr9:12726604-12726946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 17
               

               
Conread position:
               
232-565
               

               
Cow position:
               
chr9:2552264-2551931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
146, 17
               

               
Conread position:
               
232-565
               

               
Cow position:
               
chr9:3310777-3311108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-566
               

               
Cow position:
               
chr9:203132-202800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-566
               

               
Cow position:
               
chr9:778661-778323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
158, 19
               

               
Conread position:
               
232-566
               

               
Cow position:
               
chr9:1249840-1249507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 17
               

               
Conread position:
               
232-566
               

               
Cow position:
               
chr9:26421818-26421485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-566
               

               
Cow position:
               
chr9:30828911-30829242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-566
               

               
Cow position:
               
chr9:37174959-37175295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-566
               

               
Cow position:
               
chr9:44167760-44168081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-566
               

               
Cow position:
               
chr9:50326000-50326335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 17
               

               
Conread position:
               
232-566
               

               
Cow position:
               
chr9:52525312-52525648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-566
               

               
Cow position:
               
chr9:64013066-64012730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 17
               

               
Conread position:
               
232-567
               

               
Cow position:
               
chr9:52035943-52036272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr9:2807202-2806857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 17
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr9:3577328-3576987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr9:4718728-4719062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
74, 17
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr9:6372487-6372155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
175, 17
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr9:6884486-6884829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr9:19077825-19078157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr9:28680130-28680474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr9:44521095-44521415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr9:54680595-54680242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr9:56302285-56301940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:2496571-2496225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
105, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:5535061-5534717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:5626971-5627319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:6251417-6251771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:7004884-7005218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:7059908-7059562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:9015229-9015575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:10938881-10939224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:16177749-16178095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:17303809-17303468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 10
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:19157125-19156784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:21411467-21411812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:28023965-28024310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:28356721-28357065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:31809740-31810079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:34770323-34770657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
232-576
               

               
Cow position:
               
chr9:59480694-59480349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 17
               

               
Conread position:
               
233-560
               

               
Cow position:
               
chr9:40416871-40416531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
145, 16
               

               
Conread position:
               
235-383
               

               
Cow position:
               
chr9:17313662-17313809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
235-465
               

               
Cow position:
               
chr9:35936855-35936619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
235-472
               

               
Cow position:
               
chr9:49302073-49301841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
235-481
               

               
Cow position:
               
chr9:8164730-8164492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
235-517
               

               
Cow position:
               
chr9:37067026-37067300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
235-524
               

               
Cow position:
               
chr9:31091343-31091633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
235-562
               

               
Cow position:
               
chr9:33951039-33950722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
235-563
               

               
Cow position:
               
chr9:35707734-35708062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
235-564
               

               
Cow position:
               
chr9:649882-649561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
157, 14
               

               
Conread position:
               
235-564
               

               
Cow position:
               
chr9:1741678-1741363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
235-564
               

               
Cow position:
               
chr9:9327878-9327548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 14
               

               
Conread position:
               
235-564
               

               
Cow position:
               
chr9:35593916-35593591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
235-565
               

               
Cow position:
               
chr9:5526467-5526145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
235-566
               

               
Cow position:
               
chr9:1098752-1099084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
235-566
               

               
Cow position:
               
chr9:17062228-17061904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
235-572
               

               
Cow position:
               
chr9:11440522-11440180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 14
               

               
Conread position:
               
235-575
               

               
Cow position:
               
chr9:1982981-1983317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
235-575
               

               
Cow position:
               
chr9:4941332-4940995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
235-575
               

               
Cow position:
               
chr9:13473620-13473280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
79, 14
               

               
Conread position:
               
235-575
               

               
Cow position:
               
chr9:24979484-24979162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
136, 14
               

               
Conread position:
               
235-575
               

               
Cow position:
               
chr9:26569444-26569767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
187, 14
               

               
Conread position:
               
235-575
               

               
Cow position:
               
chr9:34240941-34240600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
235-575
               

               
Cow position:
               
chr9:59509008-59508670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
235-576
               

               
Cow position:
               
chr9:3728988-3729335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
235-576
               

               
Cow position:
               
chr9:10856180-10856523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 14
               

               
Conread position:
               
235-576
               

               
Cow position:
               
chr9:27037269-27037612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 14
               

               
Conread position:
               
235-576
               

               
Cow position:
               
chr9:32971535-32971878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 7
               

               
Conread position:
               
236-575
               

               
Cow position:
               
chr9:14044786-14045125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
160, 6
               

               
Conread position:
               
236-576
               

               
Cow position:
               
chr9:18507665-18507326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 13
               

               
Conread position:
               
237-466
               

               
Cow position:
               
chr9:33593298-33593529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
237-532
               

               
Cow position:
               
chr9:17100900-17100615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
156, 12
               

               
Conread position:
               
237-566
               

               
Cow position:
               
chr9:62734983-62734655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
237-576
               

               
Cow position:
               
chr9:22320537-22320204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
154, 12
               

               
Conread position:
               
238-547
               

               
Cow position:
               
chr9:2865824-2865519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
152, 11
               

               
Conread position:
               
238-575
               

               
Cow position:
               
chr9:61238779-61238440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
148, 11
               

               
Conread position:
               
238-576
               

               
Cow position:
               
chr9:2209652-2209325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
183, 66
               

               
Conread position:
               
239-476
               

               
Cow position:
               
chr9:16749799-16750034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
241-576
               

               
Cow position:
               
chr9:20780063-20780405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
127, 111
               

               
Conread position:
               
246-478
               

               
Cow position:
               
chr9:9561297-9561065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 178
               

               
Conread position:
               
246-555
               

               
Cow position:
               
chr9:18778881-18778582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
144, 54
               

               
Conread position:
               
246-560
               

               
Cow position:
               
chr9:9198285-9198593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
74, 137
               

               
Conread position:
               
246-564
               

               
Cow position:
               
chr9:59430685-59431003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
146, 199
               

               
Conread position:
               
246-566
               

               
Cow position:
               
chr9:1072116-1071795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
150, 48
               

               
Conread position:
               
246-566
               

               
Cow position:
               
chr9:38678303-38678620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
144, 240
               

               
Conread position:
               
246-575
               

               
Cow position:
               
chr9:2526460-2526788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
164, 79
               

               
Conread position:
               
246-575
               

               
Cow position:
               
chr9:44203901-44203569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 313
               

               
Conread position:
               
246-575
               

               
Cow position:
               
chr9:45875687-45876019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
246-576
               

               
Cow position:
               
chr9:27897202-27897520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
150, 21
               

               
Conread position:
               
247-556
               

               
Cow position:
               
chr9:43666834-43667134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
143, 57
               

               
Conread position:
               
247-563
               

               
Cow position:
               
chr9:28658880-28658561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 80
               

               
Conread position:
               
247-566
               

               
Cow position:
               
chr9:55316123-55315802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
146, 37
               

               
Conread position:
               
247-576
               

               
Cow position:
               
chr9:37160642-37160308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
150, 100
               

               
Conread position:
               
247-576
               

               
Cow position:
               
chr9:43303050-43302719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 63
               

               
Conread position:
               
248-560
               

               
Cow position:
               
chr9:2594834-2595143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 46
               

               
Conread position:
               
248-566
               

               
Cow position:
               
chr9:2485444-2485127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
148, 82
               

               
Conread position:
               
248-575
               

               
Cow position:
               
chr9:2835819-2835494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
159, 55
               

               
Conread position:
               
248-575
               

               
Cow position:
               
chr9:14040022-14039699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
145, 62
               

               
Conread position:
               
249-575
               

               
Cow position:
               
chr9:63670645-63670970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
141, 120
               

               
Conread position:
               
250-564
               

               
Cow position:
               
chr9:57468538-57468850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
109, 103
               

               
Conread position:
               
253-575
               

               
Cow position:
               
chr9:27098509-27098847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
57, 112
               

               
Conread position:
               
255-553
               

               
Cow position:
               
chr9:2288957-2288658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
138, 40
               

               
Conread position:
               
255-560
               

               
Cow position:
               
chr9:22441688-22441980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
153, 19
               

               
Conread position:
               
255-564
               

               
Cow position:
               
chr9:31093882-31093588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
136, 24
               

               
Conread position:
               
255-565
               

               
Cow position:
               
chr9:1063522-1063211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 216
               

               
Conread position:
               
255-566
               

               
Cow position:
               
chr9:25212052-25212375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
135, 63
               

               
Conread position:
               
257-481
               

               
Cow position:
               
chr9:5861682-5861460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
138, 105
               

               
Conread position:
               
257-575
               

               
Cow position:
               
chr9:12250297-12250614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
132, 232
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr9:52722604-52722905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
69, 102
               

               
Conread position:
               
258-575
               

               
Cow position:
               
chr9:7019183-7019487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
54, 87
               

               
Conread position:
               
260-457
               

               
Cow position:
               
chr9:12182235-12182039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
133, 92
               

               
Conread position:
               
260-553
               

               
Cow position:
               
chr9:10759650-10759931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
157, 32
               

               
Conread position:
               
262-575
               

               
Cow position:
               
chr9:30489776-30490077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 8
               

               
Conread position:
               
263-565
               

               
Cow position:
               
chr9:31060914-31061204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
127, 94
               

               
Conread position:
               
266-576
               

               
Cow position:
               
chr9:10324006-10324316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
124, 190
               

               
Conread position:
               
267-566
               

               
Cow position:
               
chr9:56175963-56176261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
123, 242
               

               
Conread position:
               
268-566
               

               
Cow position:
               
chr9:22474099-22473798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
269-575
               

               
Cow position:
               
chr9:50775036-50775342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 56
               

               
Conread position:
               
269-576
               

               
Cow position:
               
chr9:26738207-26738521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
109, 61
               

               
Conread position:
               
270-566
               

               
Cow position:
               
chr9:5453444-5453743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
278-520
               

               
Cow position:
               
chr9:36504633-36504376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
278-543
               

               
Cow position:
               
chr9:41555641-41555386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
195, 32
               

               
Conread position:
               
279-566
               

               
Cow position:
               
chr9:3412713-3412425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
280-558
               

               
Cow position:
               
chr9:8656467-8656188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
110, 60
               

               
Conread position:
               
282-560
               

               
Cow position:
               
chr9:11712328-11712597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
209, 51
               

               
Conread position:
               
288-576
               

               
Cow position:
               
chr9:3545037-3545326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
108, 228
               

               
Conread position:
               
289-566
               

               
Cow position:
               
chr9:6921544-6921264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
291-563
               

               
Cow position:
               
chr9:8739273-8739008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
291-566
               

               
Cow position:
               
chr9:14002255-14002530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
105, 224
               

               
Conread position:
               
295-542
               

               
Cow position:
               
chr9:51590530-51590779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
42, 35
               

               
Conread position:
               
303-562
               

               
Cow position:
               
chr9:11503898-11504159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
90, 5
               

               
Conread position:
               
304-575
               

               
Cow position:
               
chr9:9680395-9680124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 28
               

               
Conread position:
               
305-478
               

               
Cow position:
               
chr9:42903599-42903424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
305-563
               

               
Cow position:
               
chr9:24723011-24723269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 115
               

               
Conread position:
               
305-576
               

               
Cow position:
               
chr9:31113386-31113656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
306-556
               

               
Cow position:
               
chr9:52409075-52408836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
7, 109
               

               
Conread position:
               
310-575
               

               
Cow position:
               
chr9:20940692-20940956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
311-558
               

               
Cow position:
               
chr9:62716774-62717019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 51
               

               
Conread position:
               
311-566
               

               
Cow position:
               
chr9:35021640-35021889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
82, 47
               

               
Conread position:
               
311-575
               

               
Cow position:
               
chr9:15053650-15053383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
318-538
               

               
Cow position:
               
chr9:62482417-62482636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
75, 166
               

               
Conread position:
               
320-576
               

               
Cow position:
               
chr9:3960900-3960645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 57
               

               
Conread position:
               
325-576
               

               
Cow position:
               
chr9:27782644-27782390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
341-576
               

               
Cow position:
               
chr9:18538928-18539164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
347-566
               

               
Cow position:
               
chr9:10746366-10746150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
67, 32
               

               
Conread position:
               
348-566
               

               
Cow position:
               
chr9:35544258-35544038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
359-566
               

               
Cow position:
               
chr9:31418223-31418013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
365-561
               

               
Cow position:
               
chr9:33069380-33069184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
365-566
               

               
Cow position:
               
chr9:999751-999955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
367-576
               

               
Cow position:
               
chr9:22655102-22655314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
369-576
               

               
Cow position:
               
chr9:1992245-1992035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
373-575
               

               
Cow position:
               
chr9:54460253-54460053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 132
               

               
Conread position:
               
395-566
               

               
Cow position:
               
chr9:2518635-2518462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
395-572
               

               
Cow position:
               
chr9:26276975-26277154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
405-576
               

               
Cow position:
               
chr9:30282681-30282510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
408-576
               

               
Cow position:
               
chr9:6765438-6765271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
132, 39
               

               
Conread position:
               
419-557
               

               
Cow position:
               
chr9:31412684-31412546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
421-566
               

               
Cow position:
               
chr9:50002804-50002949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
439-576
               

               
Cow position:
               
chr9:59538507-59538644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.