Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aaq-h-12-1-UM.s1.3.5 |
| Conread position: | 79-217 |
| Cow position: | chr13:22119000-22119137 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 49 |
| Conread position: | 791-1233 |
| Cow position: | chr13:56292279-56291831 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 834-1402 |
| Cow position: | chr13:39984122-39984687 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 5 |
| Conread position: | 844-1406 |
| Cow position: | chr13:39983795-39984355 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 337 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 860-1371 |
| Cow position: | chr13:56333542-56334052 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 318 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 864-1404 |
| Cow position: | chr13:39983982-39984521 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 881-1351 |
| Cow position: | chr13:56317361-56317823 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 161, 113 |
| Conread position: | 881-1366 |
| Cow position: | chr13:39984418-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 111 |
| Conread position: | 881-1404 |
| Cow position: | chr13:39984082-39984605 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1404 |
| Cow position: | chr13:39984250-39984773 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1457 |
| Cow position: | chr13:56333646-56334232 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 193 |
| Conread position: | 881-1462 |
| Cow position: | chr13:56292431-56291853 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 366 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 91, 210 |
| Conread position: | 881-1464 |
| Cow position: | chr13:56333730-56334323 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 364 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 318, 346 |
| Conread position: | 887-1372 |
| Cow position: | chr13:39930668-39931153 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 887-1398 |
| Cow position: | chr13:22124865-22125376 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 93, 99 |
| Conread position: | 887-1406 |
| Cow position: | chr13:39930584-39931104 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 93, 99 |
| Conread position: | 887-1440 |
| Cow position: | chr13:24162591-24163144 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 336 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 93, 99 |
| Conread position: | 890-1404 |
| Cow position: | chr13:39984343-39984857 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 890-1436 |
| Cow position: | chr13:56292332-56291796 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 344 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 36, 40 |
| Conread position: | 902-1231 |
| Cow position: | chr13:22125300-22125629 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 246, 252 |
| Conread position: | 902-1231 |
| Cow position: | chr13:24163026-24163355 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 246, 252 |
| Conread position: | 918-1434 |
| Cow position: | chr13:24162874-24163390 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 88 |
| Conread position: | 919-1314 |
| Cow position: | chr13:24162539-24162934 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 82, 95 |
| Conread position: | 941-1413 |
| Cow position: | chr13:39983974-39984446 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 947-1413 |
| Cow position: | chr13:39983812-39984278 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 292 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 26, 30 |
| Conread position: | 962-1325 |
| Cow position: | chr13:22124688-22125051 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 271, 277 |
| Conread position: | 962-1325 |
| Cow position: | chr13:24162414-24162777 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 271, 277 |
| Conread position: | 1013-1441 |
| Cow position: | chr13:56333610-56334038 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 276 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 195, 205 |
| Conread position: | 1058-1396 |
| Cow position: | chr13:56333571-56333909 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 1180-1416 |
| Cow position: | chr13:56333609-56333845 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 73 |
Show alignments to all cow chromosomes.