Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aaq-h-12-1-UM.s1.3.5 |
| Conread position: | 78-196 |
| Cow position: | chr17:44465956-44466074 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 774-1385 |
| Cow position: | chr17:22499164-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 150 |
| Conread position: | 775-1404 |
| Cow position: | chr17:22552788-22552144 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 232 |
| Conread position: | 781-1404 |
| Cow position: | chr17:22552278-22551640 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 224 |
| Conread position: | 782-1406 |
| Cow position: | chr17:22552949-22552310 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 582 |
| Conread position: | 861-1386 |
| Cow position: | chr17:22552016-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 354 |
| Conread position: | 864-1413 |
| Cow position: | chr17:22552935-22552387 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 528, 17 |
| Conread position: | 864-1458 |
| Cow position: | chr17:22499310-22498716 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 586, 17 |
| Conread position: | 864-1458 |
| Cow position: | chr17:22552347-22551753 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 586, 17 |
| Conread position: | 880-1404 |
| Cow position: | chr17:22553004-22552480 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1228 |
| Cow position: | chr17:22551827-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1323 |
| Cow position: | chr17:22452112-22451670 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 290, 280 |
| Conread position: | 881-1373 |
| Cow position: | chr17:22589665-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 277 |
| Conread position: | 881-1387 |
| Cow position: | chr17:22499126-22498620 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1397 |
| Cow position: | chr17:22473435-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 489, 0 |
| Conread position: | 881-1398 |
| Cow position: | chr17:22452280-22451763 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 310 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1402 |
| Cow position: | chr17:22473351-22473872 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1402 |
| Cow position: | chr17:22589749-22589228 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 273 |
| Conread position: | 881-1404 |
| Cow position: | chr17:22452196-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 103 |
| Conread position: | 881-1404 |
| Cow position: | chr17:22452364-22451841 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 103 |
| Conread position: | 881-1406 |
| Cow position: | chr17:22590253-22589728 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 203 |
| Conread position: | 881-1408 |
| Cow position: | chr17:22589917-22589390 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 362 |
| Conread position: | 881-1409 |
| Cow position: | chr17:22499210-22498682 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 196 |
| Conread position: | 881-1458 |
| Cow position: | chr17:22552499-22551921 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 0 |
| Conread position: | 881-1458 |
| Cow position: | chr17:22552751-22552173 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 0 |
| Conread position: | 881-1458 |
| Cow position: | chr17:22553087-22552509 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 524, 539 |
| Conread position: | 881-1458 |
| Cow position: | chr17:22589833-22589255 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 881-1461 |
| Cow position: | chr17:22552079-22551499 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 273 |
| Conread position: | 881-1462 |
| Cow position: | chr17:22552583-22552002 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1462 |
| Cow position: | chr17:22590169-22589588 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 542, 527 |
| Conread position: | 885-1457 |
| Cow position: | chr17:22499374-22498801 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 528, 523 |
| Conread position: | 887-1406 |
| Cow position: | chr17:22590079-22589560 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 200 |
| Conread position: | 890-1462 |
| Cow position: | chr17:22552406-22551834 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 516, 530 |
| Conread position: | 895-1448 |
| Cow position: | chr17:22473200-22473750 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 339 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 909-1404 |
| Cow position: | chr17:22553143-22552648 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 914-1239 |
| Cow position: | chr17:44467910-44468235 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 917-1458 |
| Cow position: | chr17:22452412-22451870 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 949-1409 |
| Cow position: | chr17:22590269-22589809 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 294, 300 |
| Conread position: | 950-1448 |
| Cow position: | chr17:22499393-22498895 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 458 |
| Conread position: | 1031-1462 |
| Cow position: | chr17:22553105-22552674 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1049-1409 |
| Cow position: | chr17:22590253-22589893 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 101, 105 |
| Conread position: | 1111-1458 |
| Cow position: | chr17:22499400-22499052 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 340, 0 |
Show alignments to all cow chromosomes.