Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aaq-h-12-1-UM.s1.3.5 |
| Conread position: | 764-1458 |
| Cow position: | chr19:23614329-23615036 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 22 |
| Conread position: | 773-1406 |
| Cow position: | chr19:23613663-23614311 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 124 |
| Conread position: | 774-1308 |
| Cow position: | chr19:20635569-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 340 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 71, 143 |
| Conread position: | 776-1404 |
| Cow position: | chr19:23649620-23650263 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 337 |
| Conread position: | 832-1404 |
| Cow position: | chr19:20677503-20678072 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 856-1404 |
| Cow position: | chr19:23597022-23597570 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 863-1404 |
| Cow position: | chr19:23649387-23649927 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 864-1375 |
| Cow position: | chr19:23649976-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 17 |
| Conread position: | 864-1402 |
| Cow position: | chr19:23613938-23614475 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 864-1404 |
| Cow position: | chr19:23649556-23650095 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 17 |
| Conread position: | 864-1406 |
| Cow position: | chr19:14940074-14940615 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 864-1436 |
| Cow position: | chr19:23649892-23650463 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 864-1448 |
| Cow position: | chr19:23614358-23614941 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 865-1239 |
| Cow position: | chr19:14940663-14941036 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 875-1458 |
| Cow position: | chr19:14939999-14940584 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 551 |
| Conread position: | 879-1458 |
| Cow position: | chr19:23614288-23614868 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 275 |
| Conread position: | 880-1409 |
| Cow position: | chr19:14940173-14940702 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 50 |
| Conread position: | 880-1409 |
| Cow position: | chr19:43570287-43569762 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 881-1120 |
| Cow position: | chr19:14959062-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 160, 169 |
| Conread position: | 881-1294 |
| Cow position: | chr19:14960123-14959712 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 188 |
| Conread position: | 881-1317 |
| Cow position: | chr19:20678305-20678738 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 278 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 298, 288 |
| Conread position: | 881-1319 |
| Cow position: | chr19:14948448-14948011 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 284 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 213, 45 |
| Conread position: | 881-1321 |
| Cow position: | chr19:20678221-20678661 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 380, 372 |
| Conread position: | 881-1362 |
| Cow position: | chr19:14940594-14941075 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1395 |
| Cow position: | chr19:14940510-14941024 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 102 |
| Conread position: | 881-1395 |
| Cow position: | chr19:23597215-23597730 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 435 |
| Conread position: | 881-1401 |
| Cow position: | chr19:43570364-43569854 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 86 |
| Conread position: | 881-1402 |
| Cow position: | chr19:14960289-14959772 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 881-1404 |
| Cow position: | chr19:20677717-20678240 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 314 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1404 |
| Cow position: | chr19:20678137-20678660 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 881-1406 |
| Cow position: | chr19:23614122-23614647 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 207 |
| Conread position: | 881-1407 |
| Cow position: | chr19:23613450-23613976 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 217 |
| Conread position: | 881-1409 |
| Cow position: | chr19:14940258-14940786 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1409 |
| Cow position: | chr19:14959551-14959038 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 245 |
| Conread position: | 881-1416 |
| Cow position: | chr19:14940342-14940879 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 521, 0 |
| Conread position: | 881-1436 |
| Cow position: | chr19:43570206-43569655 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 111 |
| Conread position: | 881-1457 |
| Cow position: | chr19:14940426-14941003 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 369 |
| Conread position: | 881-1457 |
| Cow position: | chr19:23613366-23613943 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 0 |
| Conread position: | 881-1458 |
| Cow position: | chr19:23613534-23614112 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 362 |
| Conread position: | 881-1458 |
| Cow position: | chr19:23614038-23614616 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 881-1458 |
| Cow position: | chr19:23614206-23614784 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 0 |
| Conread position: | 881-1458 |
| Cow position: | chr19:23649824-23650401 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 109 |
| Conread position: | 881-1460 |
| Cow position: | chr19:23614542-23615119 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 881-1462 |
| Cow position: | chr19:23613618-23614199 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 111 |
| Conread position: | 881-1462 |
| Cow position: | chr19:23613702-23614283 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 371 |
| Conread position: | 881-1463 |
| Cow position: | chr19:20635615-20635032 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 541, 527 |
| Conread position: | 884-1457 |
| Cow position: | chr19:20677303-20677874 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 358 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 252, 47 |
| Conread position: | 885-1404 |
| Cow position: | chr19:20677385-20677904 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 53 |
| Conread position: | 886-1233 |
| Cow position: | chr19:14948360-14948013 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 208, 214 |
| Conread position: | 886-1439 |
| Cow position: | chr19:14959712-14959170 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 342 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 441, 61 |
| Conread position: | 887-1404 |
| Cow position: | chr19:20677639-20678156 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 127 |
| Conread position: | 887-1406 |
| Cow position: | chr19:20678059-20678578 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 139 |
| Conread position: | 887-1453 |
| Cow position: | chr19:23597137-23597703 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 516, 522 |
| Conread position: | 887-1458 |
| Cow position: | chr19:23649662-23650234 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 452 |
| Conread position: | 889-1458 |
| Cow position: | chr19:14939930-14940500 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 890-1458 |
| Cow position: | chr19:14960448-14959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 13 |
| Conread position: | 890-1458 |
| Cow position: | chr19:23649497-23650066 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 286 |
| Conread position: | 896-1458 |
| Cow position: | chr19:23596814-23597373 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 13 |
| Conread position: | 914-1204 |
| Cow position: | chr19:14959113-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 914-1239 |
| Cow position: | chr19:14959191-14958872 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 914-1460 |
| Cow position: | chr19:14939871-14940417 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 113 |
| Conread position: | 941-1448 |
| Cow position: | chr19:20635639-20635132 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 394 |
| Conread position: | 942-1458 |
| Cow position: | chr19:23649297-23649814 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 508, 0 |
| Conread position: | 943-1403 |
| Cow position: | chr19:14948470-14948011 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 69 |
| Conread position: | 943-1407 |
| Cow position: | chr19:20677527-20677991 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 163, 150 |
| Conread position: | 945-1404 |
| Cow position: | chr19:14960477-14960020 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 0 |
| Conread position: | 949-1409 |
| Cow position: | chr19:23613350-23613810 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 972-1427 |
| Cow position: | chr19:14915988-14916438 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 101, 106 |
| Conread position: | 1013-1458 |
| Cow position: | chr19:23649284-23649730 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 154, 150 |
| Conread position: | 1016-1404 |
| Cow position: | chr19:14959257-14958875 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 1019-1457 |
| Cow position: | chr19:43570394-43569965 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 242, 117 |
| Conread position: | 1097-1404 |
| Cow position: | chr19:14948484-14948178 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1102-1459 |
| Cow position: | chr19:23649289-23649646 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1111-1403 |
| Cow position: | chr19:14960479-14960187 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 1117-1457 |
| Cow position: | chr19:23613350-23613691 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 333, 0 |
| Conread position: | 1186-1458 |
| Cow position: | chr19:20635646-20635373 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 264, 0 |
Show alignments to all cow chromosomes.