Cow genome map

Conread name: Ss1.1-mA2-MI-P-A2-aaq-h-12-1-UM.s1.3.5

Conread position: 62-195
Cow position: chr22:18035914-18035785 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 81-210
Cow position: chr22:14439822-14439951 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 81-210
Cow position: chr22:14465248-14465377 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 46

Conread position: 764-1457
Cow position: chr22:12399708-12398999 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 235

Conread position: 773-1448
Cow position: chr22:12499099-12499789 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 396

Conread position: 774-1413
Cow position: chr22:12399614-12398960 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 74

Conread position: 781-1366
Cow position: chr22:12431167-12430567 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 374
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 51, 111

Conread position: 860-1403
Cow position: chr22:12431408-12430866 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 21

Conread position: 860-1406
Cow position: chr22:12431828-12431283 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 333
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 55, 21

Conread position: 864-1209
Cow position: chr22:11641110-11641454 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 224
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 59, 17

Conread position: 864-1391
Cow position: chr22:14430402-14430928 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 319
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 66, 17

Conread position: 864-1398
Cow position: chr22:46654265-46654798 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 327
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 49, 17

Conread position: 864-1413
Cow position: chr22:46654097-46654645 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 17

Conread position: 864-1446
Cow position: chr22:12431908-12431327 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 365
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 56, 17

Conread position: 865-1325
Cow position: chr22:12418942-12418483 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 865-1403
Cow position: chr22:12458271-12457731 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 15

Conread position: 874-1413
Cow position: chr22:12385659-12385118 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 106

Conread position: 880-1404
Cow position: chr22:12476374-12475850 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 881-1194
Cow position: chr22:12399072-12398759 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 201
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 115, 109

Conread position: 881-1239
Cow position: chr22:11666547-11666905 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 228
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 43, 31

Conread position: 881-1307
Cow position: chr22:14430502-14430928 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 273
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 130, 118

Conread position: 881-1318
Cow position: chr22:12399240-12398803 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 278
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 213, 217

Conread position: 881-1330
Cow position: chr22:11640958-11641407 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 373

Conread position: 881-1372
Cow position: chr22:12385398-12384907 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 217

Conread position: 881-1374
Cow position: chr22:12475785-12475292 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 140

Conread position: 881-1374
Cow position: chr22:12499474-12499967 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 881-1401
Cow position: chr22:12476037-12475517 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 881-1402
Cow position: chr22:11640874-11641395 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 217

Conread position: 881-1402
Cow position: chr22:14429662-14430183 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 317
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 266, 273

Conread position: 881-1402
Cow position: chr22:14429746-14430267 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 332
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 33, 29

Conread position: 881-1403
Cow position: chr22:12432060-12431538 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 315
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 119, 104

Conread position: 881-1404
Cow position: chr22:11701117-11701640 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 314
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 211, 204

Conread position: 881-1404
Cow position: chr22:12458592-12458069 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 881-1404
Cow position: chr22:12475869-12475346 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 453, 448

Conread position: 881-1404
Cow position: chr22:12476205-12475682 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 881-1404
Cow position: chr22:12476289-12475766 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 301

Conread position: 881-1404
Cow position: chr22:12498970-12499493 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 301

Conread position: 881-1404
Cow position: chr22:14429830-14430353 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 121

Conread position: 881-1404
Cow position: chr22:14430334-14430857 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 334
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 48, 36

Conread position: 881-1404
Cow position: chr22:14467991-14468514 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 327
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 262, 257

Conread position: 881-1406
Cow position: chr22:11640622-11641147 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 49

Conread position: 881-1406
Cow position: chr22:11640706-11641231 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 106

Conread position: 881-1406
Cow position: chr22:12432144-12431619 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 123

Conread position: 881-1406
Cow position: chr22:14430166-14430691 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 324
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 49, 30

Conread position: 881-1408
Cow position: chr22:12458340-12457813 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 369

Conread position: 881-1409
Cow position: chr22:12499390-12499918 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 111

Conread position: 881-1410
Cow position: chr22:12431304-12430775 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 369

Conread position: 881-1410
Cow position: chr22:14430082-14430612 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 333
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 129, 110

Conread position: 881-1413
Cow position: chr22:12432228-12431696 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 318
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 411, 417

Conread position: 881-1413
Cow position: chr22:14441976-14442508 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 318
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 98, 110

Conread position: 881-1420
Cow position: chr22:12419011-12418470 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 368

Conread position: 881-1425
Cow position: chr22:12399408-12398864 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 537, 527

Conread position: 881-1425
Cow position: chr22:12431136-12430592 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 446, 455

Conread position: 881-1456
Cow position: chr22:12399744-12399168 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 371

Conread position: 881-1457
Cow position: chr22:12431724-12431146 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 123

Conread position: 881-1457
Cow position: chr22:12499054-12499631 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 183

Conread position: 881-1458
Cow position: chr22:12399828-12399250 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 29

Conread position: 881-1458
Cow position: chr22:12399906-12399334 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 67

Conread position: 881-1458
Cow position: chr22:12432396-12431819 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 195

Conread position: 881-1458
Cow position: chr22:12458508-12457930 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 531, 540

Conread position: 881-1458
Cow position: chr22:12475953-12475375 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 211

Conread position: 881-1458
Cow position: chr22:12498886-12499464 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 368

Conread position: 881-1458
Cow position: chr22:12499138-12499716 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 569, 0

Conread position: 881-1458
Cow position: chr22:14430250-14430828 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 346
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 48, 30

Conread position: 881-1462
Cow position: chr22:12431556-12430974 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 91

Conread position: 881-1465
Cow position: chr22:14468075-14468660 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 357
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 34, 26

Conread position: 882-1413
Cow position: chr22:12385483-12384950 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 34

Conread position: 885-1377
Cow position: chr22:46654369-46654863 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 47

Conread position: 885-1404
Cow position: chr22:46654201-46654720 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 324
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 55, 47

Conread position: 886-1413
Cow position: chr22:12432478-12431948 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 887-1404
Cow position: chr22:11640796-11641313 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 37

Conread position: 887-1417
Cow position: chr22:12458418-12457887 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 15

Conread position: 890-1448
Cow position: chr22:12419271-12418696 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 330
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 189, 0

Conread position: 890-1458
Cow position: chr22:46654038-46654607 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 101

Conread position: 892-1403
Cow position: chr22:46653956-46654467 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 319
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 116, 122

Conread position: 907-1427
Cow position: chr22:12385710-12385188 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 40

Conread position: 920-1406
Cow position: chr22:12498841-12499327 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 928-1404
Cow position: chr22:14467954-14468430 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 296
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 215, 210

Conread position: 928-1406
Cow position: chr22:12476410-12475932 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 929-1458
Cow position: chr22:12499354-12499884 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 163

Conread position: 939-1458
Cow position: chr22:12399930-12399418 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 12

Conread position: 939-1458
Cow position: chr22:12431414-12430894 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 68

Conread position: 940-1462
Cow position: chr22:12419305-12418766 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 299
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 276, 0

Conread position: 943-1409
Cow position: chr22:14429640-14430106 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 292
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 193, 197

Conread position: 946-1458
Cow position: chr22:12432499-12431986 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 46

Conread position: 953-1439
Cow position: chr22:12419023-12418537 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1008-1458
Cow position: chr22:12476414-12475963 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 410

Conread position: 1008-1458
Cow position: chr22:12498845-12499296 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 319

Conread position: 1010-1452
Cow position: chr22:12385691-12385246 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 285
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 232, 242

Conread position: 1017-1457
Cow position: chr22:12458624-12458182 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 273
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 80, 76

Conread position: 1031-1407
Cow position: chr22:14467973-14468349 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 231
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 136, 120

Conread position: 1057-1458
Cow position: chr22:14429507-14429904 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 244
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 393, 10

Conread position: 1073-1458
Cow position: chr22:12385712-12385324 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 250
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 40, 47

Conread position: 1087-1409
Cow position: chr22:12458638-12458316 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 210
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1098-1389
Cow position: chr22:12419315-12419024 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 162
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 168, 147

Conread position: 1156-1459
Cow position: chr22:12385713-12385409 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 46, 38

Conread position: 1161-1406
Cow position: chr22:14467936-14468180 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 165
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 174, 19

Conread position: 1166-1415
Cow position: chr22:12476424-12476176 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 163, 194

Conread position: 1166-1415
Cow position: chr22:12498835-12499083 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 83

Show alignments to all cow chromosomes.