Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aaq-h-12-1-UM.s1.3.5 |
| Conread position: | 831-1325 |
| Cow position: | chr23:24535906-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 311 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 339, 21 |
| Conread position: | 838-1353 |
| Cow position: | chr23:24522674-24522164 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 322 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 312, 14 |
| Conread position: | 860-1394 |
| Cow position: | chr23:24639548-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 860-1458 |
| Cow position: | chr23:25626276-25626873 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 877-1406 |
| Cow position: | chr23:24639311-24639841 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 78 |
| Conread position: | 880-1124 |
| Cow position: | chr23:25660502-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 880-1464 |
| Cow position: | chr23:24560707-24560123 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1103 |
| Cow position: | chr23:25698304-25698082 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1208 |
| Cow position: | chr23:24654049-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 213, 217 |
| Conread position: | 881-1291 |
| Cow position: | chr23:24626324-24626732 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 0 |
| Conread position: | 881-1293 |
| Cow position: | chr23:25660335-25660747 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 881-1321 |
| Cow position: | chr23:25626046-25626486 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 276 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1378 |
| Cow position: | chr23:25626550-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 31 |
| Conread position: | 881-1404 |
| Cow position: | chr23:24536029-24535506 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 127 |
| Conread position: | 881-1413 |
| Cow position: | chr23:25626466-25626995 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 55 |
| Conread position: | 881-1413 |
| Cow position: | chr23:25698640-25698108 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 339 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 881-1430 |
| Cow position: | chr23:24522717-24522171 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 88 |
| Conread position: | 881-1448 |
| Cow position: | chr23:25660167-25660734 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 205 |
| Conread position: | 881-1455 |
| Cow position: | chr23:24522799-24522227 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 9 |
| Conread position: | 881-1456 |
| Cow position: | chr23:24560874-24560298 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 0 |
| Conread position: | 881-1457 |
| Cow position: | chr23:24560790-24560212 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 560, 0 |
| Conread position: | 881-1458 |
| Cow position: | chr23:24547314-24546736 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 277 |
| Conread position: | 881-1458 |
| Cow position: | chr23:24639484-24640061 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 881-1460 |
| Cow position: | chr23:25724027-25723450 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 355 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 366, 315 |
| Conread position: | 881-1479 |
| Cow position: | chr23:24547230-24546631 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 119 |
| Conread position: | 885-1241 |
| Cow position: | chr23:25724107-25723751 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 915-1374 |
| Cow position: | chr23:24626274-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 928-1404 |
| Cow position: | chr23:25626009-25626485 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 928-1409 |
| Cow position: | chr23:25626177-25626655 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 305 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 163, 169 |
| Conread position: | 940-1406 |
| Cow position: | chr23:24536054-24535588 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 289 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 940-1406 |
| Cow position: | chr23:24560897-24560433 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 295 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 942-1318 |
| Cow position: | chr23:24654024-24654402 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 943-1406 |
| Cow position: | chr23:25660145-25660609 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 294 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 216, 227 |
| Conread position: | 945-1457 |
| Cow position: | chr23:24547334-24546821 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 45 |
| Conread position: | 948-1387 |
| Cow position: | chr23:25698657-25698218 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 195, 190 |
| Conread position: | 965-1379 |
| Cow position: | chr23:25724111-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 995-1448 |
| Cow position: | chr23:25625992-25626445 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 293 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 102, 92 |
| Conread position: | 1013-1402 |
| Cow position: | chr23:25698676-25698287 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 1024-1437 |
| Cow position: | chr23:25660142-25660555 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 269 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 70, 74 |
| Conread position: | 1027-1404 |
| Cow position: | chr23:24626302-24626679 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 224 |
| Conread position: | 1027-1446 |
| Cow position: | chr23:24560896-24560477 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 1037-1458 |
| Cow position: | chr23:24536041-24535619 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 404, 413 |
| Conread position: | 1043-1402 |
| Cow position: | chr23:24654043-24654402 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 291, 273 |
| Conread position: | 1043-1406 |
| Cow position: | chr23:24639226-24639589 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 155, 163 |
| Conread position: | 1044-1412 |
| Cow position: | chr23:25724116-25723748 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 283, 295 |
| Conread position: | 1049-1446 |
| Cow position: | chr23:25625962-25626359 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 101, 105 |
| Conread position: | 1094-1458 |
| Cow position: | chr23:24547353-24546988 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 317, 326 |
| Conread position: | 1095-1446 |
| Cow position: | chr23:25698678-25698327 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 1116-1458 |
| Cow position: | chr23:24536046-24535703 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 288, 293 |
| Conread position: | 1131-1459 |
| Cow position: | chr23:24654047-24654375 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 271, 289 |
| Conread position: | 1160-1401 |
| Cow position: | chr23:25698697-25698456 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 89 |
Show alignments to all cow chromosomes.