Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aaq-h-12-1-UM.s1.3.5 |
| Conread position: | 782-1379 |
| Cow position: | chr24:17035553-17034941 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 564 |
| Conread position: | 826-1402 |
| Cow position: | chr24:17078217-17077641 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 880-1404 |
| Cow position: | chr24:17036613-17036092 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 880-1406 |
| Cow position: | chr24:17035776-17035250 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1094 |
| Cow position: | chr24:16986445-16986658 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 106, 97 |
| Conread position: | 881-1228 |
| Cow position: | chr24:17013179-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 262, 256 |
| Conread position: | 881-1293 |
| Cow position: | chr24:17070642-17071054 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1294 |
| Cow position: | chr24:17077910-17077497 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1317 |
| Cow position: | chr24:17070558-17070994 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1402 |
| Cow position: | chr24:17036363-17035842 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 185 |
| Conread position: | 881-1403 |
| Cow position: | chr24:17035691-17035169 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 274 |
| Conread position: | 881-1404 |
| Cow position: | chr24:17035607-17035084 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1452 |
| Cow position: | chr24:17078246-17077674 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 274 |
| Conread position: | 881-1454 |
| Cow position: | chr24:17078078-17077504 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 0 |
| Conread position: | 881-1457 |
| Cow position: | chr24:17070390-17070967 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 881-1458 |
| Cow position: | chr24:17035859-17035281 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 0 |
| Conread position: | 881-1458 |
| Cow position: | chr24:17036027-17035449 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 567, 0 |
| Conread position: | 881-1483 |
| Cow position: | chr24:17035943-17035341 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 454 |
| Conread position: | 881-1541 |
| Cow position: | chr24:17036531-17035868 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 563, 557 |
| Conread position: | 885-1458 |
| Cow position: | chr24:17036107-17035533 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 442, 450 |
| Conread position: | 887-1439 |
| Cow position: | chr24:17070480-17071032 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 112 |
| Conread position: | 888-1541 |
| Cow position: | chr24:17036272-17035616 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 562, 0 |
| Conread position: | 893-1458 |
| Cow position: | chr24:17078317-17077752 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 9 |
| Conread position: | 1017-1392 |
| Cow position: | chr24:17013147-17013521 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 134, 138 |
| Conread position: | 1044-1457 |
| Cow position: | chr24:17036617-17036206 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 1073-1541 |
| Cow position: | chr24:17070414-17070885 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 261, 254 |
| Conread position: | 1116-1458 |
| Cow position: | chr24:17013162-17013505 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 332, 0 |
| Conread position: | 1185-1458 |
| Cow position: | chr24:17013147-17013421 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 265, 0 |
| Conread position: | 1202-1458 |
| Cow position: | chr24:17036546-17036289 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 51 |
Show alignments to all cow chromosomes.