Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aaq-h-12-1-UM.s1.3.5 |
| Conread position: | 764-1302 |
| Cow position: | chr28:7758222-7758760 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 305 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 8, 116 |
| Conread position: | 773-1233 |
| Cow position: | chr28:7758316-7758775 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 72, 89 |
| Conread position: | 774-1302 |
| Cow position: | chr28:7810409-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 169 |
| Conread position: | 781-1236 |
| Cow position: | chr28:9290156-9290620 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 58, 219 |
| Conread position: | 795-1401 |
| Cow position: | chr28:9298899-9299504 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 385 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 84, 129 |
| Conread position: | 860-1402 |
| Cow position: | chr28:9298645-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 151, 31 |
| Conread position: | 881-1125 |
| Cow position: | chr28:33210411-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 155, 191 |
| Conread position: | 881-1238 |
| Cow position: | chr28:33210243-33210602 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 881-1239 |
| Cow position: | chr28:9299320-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 117, 111 |
| Conread position: | 881-1317 |
| Cow position: | chr28:9299236-9299669 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 189, 215 |
| Conread position: | 881-1362 |
| Cow position: | chr28:7757851-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 303 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 216, 212 |
| Conread position: | 881-1378 |
| Cow position: | chr28:9253118-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 119 |
| Conread position: | 881-1387 |
| Cow position: | chr28:7810447-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 459, 90 |
| Conread position: | 881-1401 |
| Cow position: | chr28:9298582-9299098 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 83 |
| Conread position: | 881-1402 |
| Cow position: | chr28:7757515-7758036 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 57 |
| Conread position: | 881-1402 |
| Cow position: | chr28:7757599-7758120 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 104 |
| Conread position: | 881-1402 |
| Cow position: | chr28:7757683-7758204 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 369 |
| Conread position: | 881-1402 |
| Cow position: | chr28:7757767-7758288 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 102 |
| Conread position: | 881-1402 |
| Cow position: | chr28:7810363-7810875 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 174 |
| Conread position: | 881-1406 |
| Cow position: | chr28:11334122-11333596 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 518, 0 |
| Conread position: | 881-1416 |
| Cow position: | chr28:9289855-9290383 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 326 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 201, 28 |
| Conread position: | 881-1434 |
| Cow position: | chr28:11334038-11333485 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 336 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 118, 109 |
| Conread position: | 881-1446 |
| Cow position: | chr28:9253034-9253599 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1448 |
| Cow position: | chr28:7757431-7757998 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 369 |
| Conread position: | 882-1343 |
| Cow position: | chr28:34679544-34679091 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 195, 163 |
| Conread position: | 883-1448 |
| Cow position: | chr28:9298834-9299383 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 350 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 59, 55 |
| Conread position: | 884-1402 |
| Cow position: | chr28:9252953-9253471 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 255 |
| Conread position: | 885-1401 |
| Cow position: | chr28:34696015-34696531 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 885-1402 |
| Cow position: | chr28:7810283-7810791 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 0 |
| Conread position: | 887-1205 |
| Cow position: | chr28:34696269-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 887-1235 |
| Cow position: | chr28:34696185-34696533 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 127, 121 |
| Conread position: | 890-1325 |
| Cow position: | chr28:34696104-34696539 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 124, 101 |
| Conread position: | 928-1402 |
| Cow position: | chr28:9252912-9253387 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 31, 171 |
| Conread position: | 929-1407 |
| Cow position: | chr28:9290151-9290623 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 80, 56 |
| Conread position: | 933-1448 |
| Cow position: | chr28:11334154-11333639 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 155 |
| Conread position: | 941-1406 |
| Cow position: | chr28:7757407-7757872 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 109 |
| Conread position: | 947-1401 |
| Cow position: | chr28:9299218-9299669 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 144, 148 |
| Conread position: | 949-1386 |
| Cow position: | chr28:7758323-7758760 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 284, 300 |
| Conread position: | 950-1352 |
| Cow position: | chr28:33210228-33210631 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 952-1406 |
| Cow position: | chr28:7757334-7757788 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 286 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 90, 98 |
| Conread position: | 962-1448 |
| Cow position: | chr28:7810276-7810753 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 308 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 279, 249 |
| Conread position: | 995-1387 |
| Cow position: | chr28:34679597-34679204 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 1028-1402 |
| Cow position: | chr28:9298561-9298933 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 1034-1401 |
| Cow position: | chr28:33210228-33210596 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 1096-1404 |
| Cow position: | chr28:34673417-34673725 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 1099-1458 |
| Cow position: | chr28:7757397-7757757 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 351, 0 |
| Conread position: | 1115-1462 |
| Cow position: | chr28:9298564-9298909 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 39, 101 |
Show alignments to all cow chromosomes.