Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aaq-h-12-1-UM.s1.3.5 |
| Conread position: | 754-1404 |
| Cow position: | chr3:68027047-68027714 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 390 |
| Conread position: | 765-1290 |
| Cow position: | chr3:62742913-62743432 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 337 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 774-1456 |
| Cow position: | chr3:68045662-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 170 |
| Conread position: | 855-1239 |
| Cow position: | chr3:68027335-68027717 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 62, 10 |
| Conread position: | 862-1291 |
| Cow position: | chr3:62721992-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 275 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 864-1458 |
| Cow position: | chr3:68027091-68027685 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 361 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 284, 17 |
| Conread position: | 864-1461 |
| Cow position: | chr3:62742613-62743183 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 378 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 865-1235 |
| Cow position: | chr3:20194890-20195259 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 198, 16 |
| Conread position: | 865-1462 |
| Cow position: | chr3:68045685-68046281 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 881-1223 |
| Cow position: | chr3:68027443-68027784 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 113, 120 |
| Conread position: | 881-1343 |
| Cow position: | chr3:62722058-62721596 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 111 |
| Conread position: | 881-1378 |
| Cow position: | chr3:62742545-62743033 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 265, 96 |
| Conread position: | 881-1401 |
| Cow position: | chr3:62722226-62721706 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 370 |
| Conread position: | 881-1406 |
| Cow position: | chr3:62742377-62742898 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 510, 260 |
| Conread position: | 881-1413 |
| Cow position: | chr3:68045616-68046148 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 217 |
| Conread position: | 881-1414 |
| Cow position: | chr3:62742961-62743472 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 337 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 117, 45 |
| Conread position: | 881-1452 |
| Cow position: | chr3:68027023-68027595 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 292 |
| Conread position: | 881-1457 |
| Cow position: | chr3:62722310-62721733 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 0 |
| Conread position: | 884-1241 |
| Cow position: | chr3:62743110-62743467 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 886-1481 |
| Cow position: | chr3:62722137-62721538 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 212 |
| Conread position: | 887-1401 |
| Cow position: | chr3:20194743-20195257 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 306 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 182, 178 |
| Conread position: | 912-1407 |
| Cow position: | chr3:62722363-62721868 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 931-1409 |
| Cow position: | chr3:68045583-68046060 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 11 |
| Conread position: | 936-1233 |
| Cow position: | chr3:77350926-77350632 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 62, 78 |
| Conread position: | 941-1462 |
| Cow position: | chr3:77351165-77350655 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 312 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 188, 61 |
| Conread position: | 947-1409 |
| Cow position: | chr3:62742276-62742734 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 948-1391 |
| Cow position: | chr3:68027342-68027784 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 314, 295 |
| Conread position: | 953-1405 |
| Cow position: | chr3:68027012-68027463 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 1011-1373 |
| Cow position: | chr3:77350935-77350576 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 1013-1242 |
| Cow position: | chr3:16020400-16020174 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 221, 193 |
| Conread position: | 1081-1462 |
| Cow position: | chr3:62722362-62721981 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 1085-1457 |
| Cow position: | chr3:68045652-68046025 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 242, 253 |
| Conread position: | 1130-1462 |
| Cow position: | chr3:68027020-68027352 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 88, 83 |
Show alignments to all cow chromosomes.