Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aaq-h-12-1-UM.s1.3.5 |
| Conread position: | 781-1239 |
| Cow position: | chr7:11600951-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 97, 321 |
| Conread position: | 830-1404 |
| Cow position: | chr7:8324783-8325355 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 35 |
| Conread position: | 839-1404 |
| Cow position: | chr7:8277571-8278134 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 360 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 846-1402 |
| Cow position: | chr7:1439709-1440258 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 17 |
| Conread position: | 860-1240 |
| Cow position: | chr7:1439886-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 14 |
| Conread position: | 864-1175 |
| Cow position: | chr7:1438416-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 864-1406 |
| Cow position: | chr7:3179864-3180405 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 17 |
| Conread position: | 864-1458 |
| Cow position: | chr7:1014356-1014944 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 864-1479 |
| Cow position: | chr7:3180200-3180813 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 586, 17 |
| Conread position: | 878-1541 |
| Cow position: | chr7:1014699-1015365 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 880-1458 |
| Cow position: | chr7:11601089-11600510 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 881-1239 |
| Cow position: | chr7:18390429-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 140, 111 |
| Conread position: | 881-1321 |
| Cow position: | chr7:1439823-1440261 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 36 |
| Conread position: | 881-1384 |
| Cow position: | chr7:1014954-1015457 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 40 |
| Conread position: | 881-1385 |
| Cow position: | chr7:8277947-8278451 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 881-1401 |
| Cow position: | chr7:11601172-11600652 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1402 |
| Cow position: | chr7:1014870-1015391 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 881-1404 |
| Cow position: | chr7:8242814-8243337 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 314 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 881-1404 |
| Cow position: | chr7:8277359-8277882 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 318 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 881-1404 |
| Cow position: | chr7:8324916-8325439 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 332 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 881-1404 |
| Cow position: | chr7:8325168-8325691 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 881-1404 |
| Cow position: | chr7:18390177-18390700 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 31 |
| Conread position: | 881-1404 |
| Cow position: | chr7:28846438-28846961 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 317 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 881-1404 |
| Cow position: | chr7:42879261-42878738 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 111 |
| Conread position: | 881-1406 |
| Cow position: | chr7:3179964-3180489 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 881-1406 |
| Cow position: | chr7:11601004-11600479 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1406 |
| Cow position: | chr7:18390261-18390786 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1409 |
| Cow position: | chr7:8243234-8243761 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 123, 115 |
| Conread position: | 881-1413 |
| Cow position: | chr7:42878925-42878393 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 111 |
| Conread position: | 881-1421 |
| Cow position: | chr7:1439651-1440193 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 119 |
| Conread position: | 881-1421 |
| Cow position: | chr7:8278031-8278568 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 881-1448 |
| Cow position: | chr7:42878841-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 203 |
| Conread position: | 881-1457 |
| Cow position: | chr7:3180132-3180709 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 881-1458 |
| Cow position: | chr7:8325420-8325998 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 357 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 31, 49 |
| Conread position: | 881-1458 |
| Cow position: | chr7:42879009-42878431 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 273 |
| Conread position: | 881-1458 |
| Cow position: | chr7:42879177-42878599 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 522, 539 |
| Conread position: | 881-1461 |
| Cow position: | chr7:1439485-1440065 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 358 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 205, 102 |
| Conread position: | 881-1462 |
| Cow position: | chr7:42879093-42878512 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 376 |
| Conread position: | 881-1541 |
| Cow position: | chr7:3179712-3180375 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 0 |
| Conread position: | 882-1240 |
| Cow position: | chr7:1438349-1438707 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 105, 117 |
| Conread position: | 883-1383 |
| Cow position: | chr7:1014122-1014622 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 303 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 262, 271 |
| Conread position: | 908-1458 |
| Cow position: | chr7:3179655-3180206 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 190 |
| Conread position: | 918-1364 |
| Cow position: | chr7:11600883-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 180 |
| Conread position: | 926-1404 |
| Cow position: | chr7:8325381-8325859 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 292 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 88, 69 |
| Conread position: | 928-1406 |
| Cow position: | chr7:8325131-8325609 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 86, 74 |
| Conread position: | 932-1402 |
| Cow position: | chr7:1014669-1015139 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 936-1321 |
| Cow position: | chr7:8243708-8244090 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 233, 242 |
| Conread position: | 939-1402 |
| Cow position: | chr7:1014094-1014557 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 941-1344 |
| Cow position: | chr7:8325732-8326134 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 941-1404 |
| Cow position: | chr7:8242958-8243420 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 941-1404 |
| Cow position: | chr7:8243210-8243672 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 147, 137 |
| Conread position: | 941-1404 |
| Cow position: | chr7:8243545-8244006 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 283 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 448, 0 |
| Conread position: | 941-1406 |
| Cow position: | chr7:8277503-8277968 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 947-1452 |
| Cow position: | chr7:8324730-8325236 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 947-1458 |
| Cow position: | chr7:11601190-11600678 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 130 |
| Conread position: | 951-1402 |
| Cow position: | chr7:18389995-18390446 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 283 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 128, 139 |
| Conread position: | 974-1406 |
| Cow position: | chr7:8242823-8243255 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 275 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 1006-1281 |
| Cow position: | chr7:11434516-11434240 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 149 |
| Conread position: | 1009-1402 |
| Cow position: | chr7:8277233-8277628 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 1016-1456 |
| Cow position: | chr7:1014669-1015110 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 283 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 51, 68 |
| Conread position: | 1019-1404 |
| Cow position: | chr7:18390147-18390532 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 117, 121 |
| Conread position: | 1026-1404 |
| Cow position: | chr7:42879284-42878906 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1096-1406 |
| Cow position: | chr7:1439448-1439761 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 187, 146 |
| Conread position: | 1096-1448 |
| Cow position: | chr7:11601209-11600857 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 319, 309 |
| Conread position: | 1114-1404 |
| Cow position: | chr7:8324729-8325019 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 1118-1458 |
| Cow position: | chr7:42879276-42878935 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 332, 0 |
| Conread position: | 1153-1461 |
| Cow position: | chr7:1014224-1014532 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 1180-1425 |
| Cow position: | chr7:8242861-8243106 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 78 |
| Conread position: | 1180-1458 |
| Cow position: | chr7:11601209-11600930 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 270, 0 |
| Conread position: | 1196-1404 |
| Cow position: | chr7:11434822-11434614 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 56 |
Show alignments to all cow chromosomes.