Cow genome map

Conread name: Ss1.1-mA2-MI-P-A2-aaq-h-12-1-UM.s1.3.5

Conread position: 71-228
Cow position: chrX:9469062-9469218 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 143, 0

Conread position: 766-1540
Cow position: chrX:25325535-25324743 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 5

Conread position: 781-1311
Cow position: chrX:25324763-25324220 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 226

Conread position: 846-1458
Cow position: chrX:25309874-25310483 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 12

Conread position: 860-1457
Cow position: chrX:25325594-25324995 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 861-1458
Cow position: chrX:25325089-25324490 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 132

Conread position: 864-1241
Cow position: chrX:29045828-29045452 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 248
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 7, 20

Conread position: 864-1462
Cow position: chrX:25325756-25325159 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 8

Conread position: 864-1540
Cow position: chrX:25325000-25324322 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 470, 17

Conread position: 880-1239
Cow position: chrX:14181376-14181017 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 230
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 40, 26

Conread position: 880-1404
Cow position: chrX:14181544-14181020 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 306
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 123, 113

Conread position: 881-1137
Cow position: chrX:25310325-25310581 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 166
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 109, 118

Conread position: 881-1220
Cow position: chrX:29044993-29044654 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 222
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 881-1376
Cow position: chrX:25324732-25324237 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 453, 447

Conread position: 881-1402
Cow position: chrX:25309737-25310258 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 881-1402
Cow position: chrX:25309989-25310510 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 125

Conread position: 881-1404
Cow position: chrX:25325236-25324713 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 126

Conread position: 881-1406
Cow position: chrX:25325152-25324626 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 523, 0

Conread position: 881-1406
Cow position: chrX:29045329-29044804 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 42

Conread position: 881-1458
Cow position: chrX:25325320-25324742 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 26

Conread position: 881-1462
Cow position: chrX:13826849-13826268 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 346
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 33, 41

Conread position: 881-1462
Cow position: chrX:29045245-29044663 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 178

Conread position: 881-1482
Cow position: chrX:25324900-25324298 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 133

Conread position: 890-1378
Cow position: chrX:29045152-29044663 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 9

Conread position: 928-1386
Cow position: chrX:25310120-25310578 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 297
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 84, 62

Conread position: 928-1402
Cow position: chrX:25309700-25310174 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 34

Conread position: 941-1404
Cow position: chrX:12627513-12627975 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 280
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 64, 53

Conread position: 942-1402
Cow position: chrX:25325595-25325135 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 217

Conread position: 947-1320
Cow position: chrX:29045830-29045457 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 247
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 63, 73

Conread position: 977-1462
Cow position: chrX:29045316-29044832 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 421, 36

Conread position: 1004-1458
Cow position: chrX:25325785-25325330 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 332

Conread position: 1088-1409
Cow position: chrX:29045773-29045452 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 200
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1095-1457
Cow position: chrX:25309699-25310063 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 232
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 72, 57

Conread position: 1097-1462
Cow position: chrX:25325776-25325411 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 223
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.