Cow genome map

Conread name: Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3

Conread position: 430-637
Cow position: chr12:23734324-23734527 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 90, 138

Conread position: 431-639
Cow position: chr12:25933621-25933832 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 26, 152

Conread position: 439-629
Cow position: chr12:14855763-14855952 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 119, 41

Conread position: 442-609
Cow position: chr12:27038791-27038623 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 25, 56

Conread position: 449-634
Cow position: chr12:10846688-10846513 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 111, 7

Conread position: 452-610
Cow position: chr12:31528893-31528735 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 106, 5

Conread position: 452-630
Cow position: chr12:47486794-47486974 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 72, 0

Conread position: 452-635
Cow position: chr12:27055568-27055748 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 153
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 67, 29

Conread position: 453-630
Cow position: chr12:1030942-1031123 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 69, 46

Conread position: 455-601
Cow position: chr12:13657779-13657632 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 120
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 103, 0

Conread position: 455-605
Cow position: chr12:45541676-45541823 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 103, 25

Conread position: 455-611
Cow position: chr12:17262820-17262970 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 103, 25

Conread position: 455-616
Cow position: chr12:32413478-32413644 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 136
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 9, 0

Conread position: 455-623
Cow position: chr12:14325302-14325141 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 455-623
Cow position: chr12:31257984-31258140 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 455-626
Cow position: chr12:16543617-16543442 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 50, 157

Conread position: 455-626
Cow position: chr12:30596431-30596605 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 140
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 46, 0

Conread position: 455-628
Cow position: chr12:18093858-18094028 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 97, 21

Conread position: 455-628
Cow position: chr12:40716076-40715910 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 455-628
Cow position: chr12:41642396-41642570 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 28, 81

Conread position: 455-628
Cow position: chr12:48425679-48425848 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 48, 25

Conread position: 455-630
Cow position: chr12:44057484-44057657 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 104, 21

Conread position: 455-631
Cow position: chr12:34242361-34242184 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 104, 0

Conread position: 455-632
Cow position: chr12:3816449-3816629 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 455-632
Cow position: chr12:5497857-5497687 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 33, 0

Conread position: 455-632
Cow position: chr12:16205692-16205867 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 102, 24

Conread position: 455-632
Cow position: chr12:25312404-25312233 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 104, 30

Conread position: 455-632
Cow position: chr12:30064904-30065075 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 158, 25

Conread position: 455-634
Cow position: chr12:43671672-43671846 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 104, 17

Conread position: 455-635
Cow position: chr12:34849886-34849714 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 104, 32

Conread position: 455-635
Cow position: chr12:34852523-34852351 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 104, 32

Conread position: 455-635
Cow position: chr12:45226024-45225844 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 130, 58

Conread position: 455-637
Cow position: chr12:7996377-7996558 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 144
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 62, 31

Conread position: 455-637
Cow position: chr12:18769106-18768925 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 14, 44

Conread position: 455-640
Cow position: chr12:5658782-5658595 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 22, 51

Conread position: 455-645
Cow position: chr12:18966789-18966602 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 101, 21

Conread position: 455-645
Cow position: chr12:29448611-29448799 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 39, 21

Conread position: 455-648
Cow position: chr12:4582910-4583100 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 103, 140

Conread position: 455-648
Cow position: chr12:5797592-5797411 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 456-632
Cow position: chr12:7645839-7645668 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 102, 24

Conread position: 456-632
Cow position: chr12:10763222-10763407 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 86

Conread position: 456-635
Cow position: chr12:24559323-24559504 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 58, 0

Conread position: 456-635
Cow position: chr12:42477977-42478155 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 64, 12

Conread position: 456-636
Cow position: chr12:47804122-47804300 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 114, 0

Conread position: 456-637
Cow position: chr12:17109924-17109749 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 103, 24

Conread position: 456-637
Cow position: chr12:42918441-42918611 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 103, 25

Conread position: 456-638
Cow position: chr12:5680648-5680832 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 64, 0

Conread position: 456-639
Cow position: chr12:5539000-5538825 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 103, 74

Conread position: 456-648
Cow position: chr12:33458114-33458298 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 64, 27

Conread position: 456-648
Cow position: chr12:39781374-39781178 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 103, 113

Conread position: 459-636
Cow position: chr12:1504991-1505162 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 459-639
Cow position: chr12:30210451-30210639 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 460-638
Cow position: chr12:44907986-44908164 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 60, 19

Conread position: 460-646
Cow position: chr12:15984773-15984594 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 110, 30

Conread position: 460-648
Cow position: chr12:12331541-12331351 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 60, 0

Conread position: 461-635
Cow position: chr12:11520147-11520318 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 58, 19

Conread position: 462-620
Cow position: chr12:28017013-28017176 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 462-635
Cow position: chr12:16850941-16850770 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 57, 13

Conread position: 462-644
Cow position: chr12:40931641-40931460 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 160, 57

Conread position: 466-619
Cow position: chr12:27365903-27366055 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 54, 73

Conread position: 469-642
Cow position: chr12:11081121-11080947 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 142
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 91, 0

Conread position: 469-647
Cow position: chr12:34466026-34465844 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 50, 170

Conread position: 470-631
Cow position: chr12:25606684-25606848 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 473-636
Cow position: chr12:749343-749504 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 67

Conread position: 473-637
Cow position: chr12:7274717-7274557 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 156, 85

Conread position: 474-629
Cow position: chr12:3615980-3616141 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 474-637
Cow position: chr12:9229517-9229350 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 475-647
Cow position: chr12:34090113-34090279 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 72, 22

Conread position: 476-647
Cow position: chr12:36109277-36109104 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 81, 0

Conread position: 477-621
Cow position: chr12:8981067-8980923 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 123

Conread position: 480-640
Cow position: chr12:4801355-4801521 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 161

Conread position: 481-625
Cow position: chr12:21829064-21829206 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 77, 16

Conread position: 481-629
Cow position: chr12:24529393-24529247 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 61

Conread position: 481-630
Cow position: chr12:1223354-1223208 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 492-620
Cow position: chr12:44391611-44391739 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 492-646
Cow position: chr12:22689737-22689889 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 5, 45

Conread position: 496-647
Cow position: chr12:24681824-24681976 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 125
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 22, 0

Conread position: 497-640
Cow position: chr12:15066828-15066973 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 504-638
Cow position: chr12:5899524-5899656 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 14, 50

Conread position: 509-648
Cow position: chr12:9780252-9780116 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 89

Conread position: 515-646
Cow position: chr12:38096147-38096279 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 112
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 20, 121

Conread position: 516-648
Cow position: chr12:11499784-11499913 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 523-637
Cow position: chr12:35799264-35799380 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 526-636
Cow position: chr12:38592757-38592868 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 532-635
Cow position: chr12:593297-593194 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 10

Show alignments to all cow chromosomes.