Cow genome map

Conread name: Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3

Conread position: 406-645
Cow position: chr15:25111107-25111349 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 145
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 132, 75

Conread position: 435-624
Cow position: chr15:17213560-17213378 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 46

Conread position: 436-628
Cow position: chr15:39894692-39894510 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 121, 23

Conread position: 440-648
Cow position: chr15:23547893-23548095 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 119, 16

Conread position: 450-645
Cow position: chr15:7192170-7192368 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 452-622
Cow position: chr15:10303310-10303140 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 104, 5

Conread position: 452-628
Cow position: chr15:27863237-27863414 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 106, 0

Conread position: 452-636
Cow position: chr15:23109195-23109379 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 104, 7

Conread position: 452-646
Cow position: chr15:15215106-15214911 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 106, 0

Conread position: 453-639
Cow position: chr15:9494208-9494396 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 106, 67

Conread position: 454-648
Cow position: chr15:27247589-27247397 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 104, 25

Conread position: 455-578
Cow position: chr15:17911229-17911104 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 455-585
Cow position: chr15:38322921-38322790 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 455-596
Cow position: chr15:26421515-26421655 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 25

Conread position: 455-607
Cow position: chr15:9178120-9178267 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 103, 25

Conread position: 455-615
Cow position: chr15:40117363-40117525 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 104, 55

Conread position: 455-628
Cow position: chr15:20778103-20777930 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 106, 168

Conread position: 455-628
Cow position: chr15:24864184-24864351 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 103, 39

Conread position: 455-628
Cow position: chr15:25689052-25688878 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 62, 143

Conread position: 455-628
Cow position: chr15:42195181-42195349 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 115, 82

Conread position: 455-631
Cow position: chr15:24285066-24284894 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 104, 17

Conread position: 455-631
Cow position: chr15:35967399-35967574 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 66, 46

Conread position: 455-632
Cow position: chr15:20482760-20482938 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 150
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 64, 169

Conread position: 455-632
Cow position: chr15:21836766-21836600 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 68, 25

Conread position: 455-632
Cow position: chr15:43612168-43611992 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 143
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 64, 85

Conread position: 455-632
Cow position: chr15:44252447-44252274 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 104, 31

Conread position: 455-632
Cow position: chr15:47821461-47821287 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 104, 25

Conread position: 455-632
Cow position: chr15:50177196-50177017 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 65, 0

Conread position: 455-635
Cow position: chr15:12036895-12036721 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 94, 25

Conread position: 455-635
Cow position: chr15:39200866-39200689 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 121, 25

Conread position: 455-636
Cow position: chr15:11957625-11957443 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 103, 17

Conread position: 455-636
Cow position: chr15:19725635-19725805 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 104, 25

Conread position: 455-637
Cow position: chr15:34255643-34255815 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 105, 30

Conread position: 455-637
Cow position: chr15:37931677-37931850 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 20

Conread position: 455-639
Cow position: chr15:8022136-8021956 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 103, 25

Conread position: 455-639
Cow position: chr15:12163435-12163617 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 104, 46

Conread position: 455-639
Cow position: chr15:34037104-34037285 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 30, 138

Conread position: 455-642
Cow position: chr15:7980271-7980089 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 104, 48

Conread position: 455-644
Cow position: chr15:24411505-24411315 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 160
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 65, 34

Conread position: 455-646
Cow position: chr15:449968-450156 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 104, 42

Conread position: 455-647
Cow position: chr15:6491505-6491700 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 64, 0

Conread position: 455-647
Cow position: chr15:24977092-24977281 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 176, 25

Conread position: 455-648
Cow position: chr15:3571865-3571674 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 104, 143

Conread position: 455-648
Cow position: chr15:10569023-10569212 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 103, 26

Conread position: 455-648
Cow position: chr15:30958129-30958318 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 65, 124

Conread position: 456-575
Cow position: chr15:2668991-2668872 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 58, 74

Conread position: 456-620
Cow position: chr15:35283382-35283545 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 142

Conread position: 456-627
Cow position: chr15:8230481-8230649 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 63, 84

Conread position: 456-627
Cow position: chr15:9970893-9971065 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 64, 16

Conread position: 456-630
Cow position: chr15:31616921-31617096 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 103, 0

Conread position: 456-632
Cow position: chr15:40498208-40498394 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 103, 0

Conread position: 456-635
Cow position: chr15:17788191-17788017 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 15, 0

Conread position: 456-638
Cow position: chr15:4508233-4508053 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 58, 128

Conread position: 456-639
Cow position: chr15:37918731-37918545 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 106, 0

Conread position: 456-641
Cow position: chr15:26933864-26934049 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 102, 179

Conread position: 458-625
Cow position: chr15:10570534-10570698 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 135
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 61, 12

Conread position: 458-632
Cow position: chr15:6749766-6749937 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 101, 30

Conread position: 458-637
Cow position: chr15:14758170-14758346 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 145
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 83, 22

Conread position: 458-648
Cow position: chr15:37205132-37204941 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 61, 91

Conread position: 459-594
Cow position: chr15:31502803-31502940 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 459-620
Cow position: chr15:31545266-31545428 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 100, 0

Conread position: 459-644
Cow position: chr15:2800062-2799874 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 60, 14

Conread position: 460-628
Cow position: chr15:19323400-19323235 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 49

Conread position: 460-636
Cow position: chr15:44879683-44879510 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 84, 20

Conread position: 460-647
Cow position: chr15:33625039-33624846 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 460-648
Cow position: chr15:38845983-38845796 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 59, 85

Conread position: 462-632
Cow position: chr15:20370648-20370816 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 97, 77

Conread position: 462-648
Cow position: chr15:39916769-39916584 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 97, 23

Conread position: 463-632
Cow position: chr15:42771652-42771820 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 33

Conread position: 463-632
Cow position: chr15:49237915-49238081 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 96, 132

Conread position: 464-632
Cow position: chr15:44297165-44296998 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 96, 0

Conread position: 466-611
Cow position: chr15:28177529-28177383 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 466-630
Cow position: chr15:52389668-52389503 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 134
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 17, 53

Conread position: 466-642
Cow position: chr15:51361300-51361123 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 56, 170

Conread position: 469-647
Cow position: chr15:2201377-2201199 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 90, 64

Conread position: 470-637
Cow position: chr15:20402474-20402640 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 87, 54

Conread position: 472-639
Cow position: chr15:12170314-12170146 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 48, 164

Conread position: 472-648
Cow position: chr15:31599403-31599229 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 86, 141

Conread position: 480-646
Cow position: chr15:23992912-23992744 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 481-632
Cow position: chr15:5527176-5527022 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 481-635
Cow position: chr15:3572639-3572793 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 74, 120

Conread position: 481-635
Cow position: chr15:14323356-14323508 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 116, 0

Conread position: 481-646
Cow position: chr15:10189423-10189260 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 117, 0

Conread position: 481-648
Cow position: chr15:39226679-39226852 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 91, 118

Conread position: 481-648
Cow position: chr15:48013387-48013556 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 483-632
Cow position: chr15:33680752-33680602 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 484-636
Cow position: chr15:2117941-2117789 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 75, 88

Conread position: 496-642
Cow position: chr15:22886603-22886457 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 59, 139

Conread position: 523-642
Cow position: chr15:39417861-39417739 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 525-647
Cow position: chr15:28835240-28835117 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 19, 107

Show alignments to all cow chromosomes.