Cow genome map

Conread name: Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3

Conread position: 435-598
Cow position: chr16:23163593-23163428 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 437-632
Cow position: chr16:20260460-20260653 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 17, 77

Conread position: 452-628
Cow position: chr16:30929881-30930056 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 67, 28

Conread position: 453-618
Cow position: chr16:39156439-39156267 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 30, 91

Conread position: 453-619
Cow position: chr16:36930315-36930150 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 136
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 107, 0

Conread position: 453-628
Cow position: chr16:18557263-18557086 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 46, 0

Conread position: 453-632
Cow position: chr16:16546078-16546250 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 106, 27

Conread position: 454-646
Cow position: chr16:34210396-34210214 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 454-648
Cow position: chr16:16946535-16946334 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 104, 0

Conread position: 455-557
Cow position: chr16:4979805-4979908 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 455-573
Cow position: chr16:56104908-56104791 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 102
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 104, 25

Conread position: 455-601
Cow position: chr16:10303742-10303600 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 104, 25

Conread position: 455-603
Cow position: chr16:5511810-5511959 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 455-604
Cow position: chr16:23978430-23978280 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 103, 0

Conread position: 455-609
Cow position: chr16:44723026-44722877 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 455-611
Cow position: chr16:44693180-44693024 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 104, 44

Conread position: 455-619
Cow position: chr16:41711679-41711841 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 99, 57

Conread position: 455-620
Cow position: chr16:689707-689872 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 64, 12

Conread position: 455-620
Cow position: chr16:5580317-5580484 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 104, 0

Conread position: 455-620
Cow position: chr16:28827175-28827008 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 64, 0

Conread position: 455-626
Cow position: chr16:27013899-27014076 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 37, 135

Conread position: 455-628
Cow position: chr16:2618977-2618810 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 104, 29

Conread position: 455-628
Cow position: chr16:3566172-3566339 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 145
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 104, 25

Conread position: 455-628
Cow position: chr16:31490323-31490492 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 111, 21

Conread position: 455-628
Cow position: chr16:49320968-49321132 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 137
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 112, 51

Conread position: 455-628
Cow position: chr16:51069914-51069738 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 28, 126

Conread position: 455-632
Cow position: chr16:9510867-9510693 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 103, 25

Conread position: 455-632
Cow position: chr16:19003084-19002910 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 143
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 104, 25

Conread position: 455-632
Cow position: chr16:28454285-28454119 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 102, 25

Conread position: 455-632
Cow position: chr16:45693152-45693324 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 101, 47

Conread position: 455-633
Cow position: chr16:42312389-42312566 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 104, 63

Conread position: 455-637
Cow position: chr16:11662040-11662219 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 104, 25

Conread position: 455-638
Cow position: chr16:228492-228310 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 103, 124

Conread position: 455-638
Cow position: chr16:31419450-31419638 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 103, 0

Conread position: 455-639
Cow position: chr16:23066666-23066845 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 104, 32

Conread position: 455-639
Cow position: chr16:52577461-52577647 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 104, 0

Conread position: 455-640
Cow position: chr16:16056056-16055872 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 103, 124

Conread position: 455-640
Cow position: chr16:47909340-47909153 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 150
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 75, 0

Conread position: 455-644
Cow position: chr16:56445409-56445229 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 64, 16

Conread position: 455-645
Cow position: chr16:44374-44557 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 14, 81

Conread position: 455-647
Cow position: chr16:50114189-50114385 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 158
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 101, 0

Conread position: 455-648
Cow position: chr16:23025350-23025536 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 455-648
Cow position: chr16:44581069-44580878 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 64, 147

Conread position: 456-610
Cow position: chr16:32837540-32837389 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 102, 23

Conread position: 456-620
Cow position: chr16:15938525-15938362 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 102, 61

Conread position: 456-626
Cow position: chr16:41689697-41689866 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 64, 105

Conread position: 456-632
Cow position: chr16:53267730-53267904 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 144
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 102, 85

Conread position: 456-636
Cow position: chr16:18693146-18692963 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 82

Conread position: 456-636
Cow position: chr16:37719162-37719339 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 25, 143

Conread position: 456-639
Cow position: chr16:48493184-48493370 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 458-632
Cow position: chr16:9407868-9407696 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 100, 22

Conread position: 458-639
Cow position: chr16:18427194-18427367 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 100, 22

Conread position: 458-648
Cow position: chr16:8017973-8018178 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 459-647
Cow position: chr16:10611615-10611437 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 100, 16

Conread position: 459-647
Cow position: chr16:15805962-15806147 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 99, 38

Conread position: 460-631
Cow position: chr16:8315185-8315013 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 59, 82

Conread position: 460-631
Cow position: chr16:56282955-56283125 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 62, 0

Conread position: 460-635
Cow position: chr16:20664303-20664472 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 460-637
Cow position: chr16:11772241-11772063 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 5, 31

Conread position: 460-637
Cow position: chr16:46627833-46627660 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 69, 85

Conread position: 460-646
Cow position: chr16:13660224-13660040 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 148
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 60, 20

Conread position: 460-648
Cow position: chr16:10148290-10148485 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 137
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 85

Conread position: 464-627
Cow position: chr16:11777195-11777022 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 466-635
Cow position: chr16:11085368-11085197 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 141
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 57, 53

Conread position: 466-637
Cow position: chr16:22808544-22808368 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 466-647
Cow position: chr16:15808992-15809176 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 54, 0

Conread position: 466-648
Cow position: chr16:33121623-33121802 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 93, 39

Conread position: 470-632
Cow position: chr16:47116088-47116246 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 88, 139

Conread position: 470-644
Cow position: chr16:4102813-4102630 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 470-648
Cow position: chr16:42629425-42629247 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 89, 27

Conread position: 473-620
Cow position: chr16:10617833-10617684 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 473-637
Cow position: chr16:29655344-29655519 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 473-639
Cow position: chr16:34384726-34384886 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 85, 41

Conread position: 473-643
Cow position: chr16:53408909-53408737 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 164

Conread position: 474-620
Cow position: chr16:327938-327793 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 118, 11

Conread position: 476-643
Cow position: chr16:1440456-1440618 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 479-635
Cow position: chr16:30639357-30639509 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 80, 16

Conread position: 481-632
Cow position: chr16:47963320-47963473 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 481-646
Cow position: chr16:54515748-54515914 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 482-646
Cow position: chr16:31222568-31222731 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 76, 59

Conread position: 483-636
Cow position: chr16:10406550-10406394 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 128
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 31, 0

Conread position: 484-632
Cow position: chr16:51652698-51652848 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 36, 0

Conread position: 486-620
Cow position: chr16:52565454-52565588 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 491-639
Cow position: chr16:49122226-49122078 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 491-648
Cow position: chr16:55070481-55070322 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 6

Conread position: 496-639
Cow position: chr16:4708857-4708713 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 63, 140

Conread position: 496-648
Cow position: chr16:13027223-13027071 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 63, 71

Conread position: 498-628
Cow position: chr16:10331666-10331797 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 498-628
Cow position: chr16:23990462-23990334 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 41

Conread position: 504-637
Cow position: chr16:16524317-16524184 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 40

Conread position: 504-637
Cow position: chr16:46680866-46680998 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 30

Conread position: 509-648
Cow position: chr16:29510318-29510178 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 35, 115

Conread position: 527-641
Cow position: chr16:48542136-48542021 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 100
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 96

Conread position: 542-638
Cow position: chr16:16106917-16107014 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 87
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 17, 0

Show alignments to all cow chromosomes.