Cow genome map

Conread name: Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3

Conread position: 426-632
Cow position: chr17:6996293-6996499 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 30, 108

Conread position: 431-545
Cow position: chr17:36533593-36533705 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 431-600
Cow position: chr17:23879502-23879337 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 127, 37

Conread position: 449-639
Cow position: chr17:12768769-12768579 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 71, 31

Conread position: 452-640
Cow position: chr17:5360398-5360222 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 107, 8

Conread position: 452-648
Cow position: chr17:38139549-38139746 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 106, 133

Conread position: 453-632
Cow position: chr17:15922884-15923058 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 125
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 453-647
Cow position: chr17:27257186-27256982 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 453-648
Cow position: chr17:18829513-18829715 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 44, 0

Conread position: 453-648
Cow position: chr17:20216209-20216404 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 106, 47

Conread position: 454-644
Cow position: chr17:11655419-11655611 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 153
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 65, 0

Conread position: 455-581
Cow position: chr17:13600937-13600810 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 65, 119

Conread position: 455-596
Cow position: chr17:21373721-21373859 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 104, 30

Conread position: 455-604
Cow position: chr17:4085801-4085948 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 100, 25

Conread position: 455-631
Cow position: chr17:9748790-9748970 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 144
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 104, 25

Conread position: 455-631
Cow position: chr17:10220894-10221069 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 102, 82

Conread position: 455-631
Cow position: chr17:34627802-34627625 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 103, 17

Conread position: 455-631
Cow position: chr17:34870123-34870303 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 104, 0

Conread position: 455-631
Cow position: chr17:39016142-39016317 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 104, 145

Conread position: 455-632
Cow position: chr17:144132-143959 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 142
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 89, 31

Conread position: 455-632
Cow position: chr17:728310-728140 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 104, 64

Conread position: 455-632
Cow position: chr17:36217139-36216965 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 455-634
Cow position: chr17:13229421-13229602 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 144
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 36, 42

Conread position: 455-636
Cow position: chr17:19891667-19891846 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 65, 113

Conread position: 455-637
Cow position: chr17:18568890-18568721 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 104, 52

Conread position: 455-637
Cow position: chr17:23803503-23803682 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 104, 69

Conread position: 455-637
Cow position: chr17:26162379-26162200 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 87, 12

Conread position: 455-639
Cow position: chr17:10314464-10314649 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 103, 0

Conread position: 455-640
Cow position: chr17:18887723-18887553 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 455-643
Cow position: chr17:13715991-13715801 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 129

Conread position: 455-644
Cow position: chr17:30236241-30236423 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 103, 13

Conread position: 455-645
Cow position: chr17:15634838-15634653 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 25

Conread position: 455-646
Cow position: chr17:2271043-2271230 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 143, 0

Conread position: 455-646
Cow position: chr17:3620043-3619852 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 65, 87

Conread position: 455-647
Cow position: chr17:26614685-26614499 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 103, 25

Conread position: 455-647
Cow position: chr17:27819338-27819528 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 69, 144

Conread position: 455-648
Cow position: chr17:6570093-6569910 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 174, 25

Conread position: 455-648
Cow position: chr17:7595197-7595401 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 103, 25

Conread position: 455-648
Cow position: chr17:32457522-32457333 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 103, 30

Conread position: 456-609
Cow position: chr17:23318272-23318125 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 456-628
Cow position: chr17:8279663-8279498 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 80

Conread position: 456-628
Cow position: chr17:37138807-37138970 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 102, 22

Conread position: 456-632
Cow position: chr17:31465207-31465020 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 61, 90

Conread position: 456-632
Cow position: chr17:40854897-40855077 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 102, 24

Conread position: 456-635
Cow position: chr17:31798404-31798225 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 146
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 103, 58

Conread position: 456-637
Cow position: chr17:27505141-27505322 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 150
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 107, 41

Conread position: 456-638
Cow position: chr17:8215236-8215420 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 167, 0

Conread position: 456-638
Cow position: chr17:24580250-24580068 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 64, 58

Conread position: 456-644
Cow position: chr17:7614335-7614145 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 37, 65

Conread position: 458-627
Cow position: chr17:21730248-21730082 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 80, 30

Conread position: 458-639
Cow position: chr17:36818086-36818265 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 101, 79

Conread position: 458-646
Cow position: chr17:10271542-10271718 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 100, 26

Conread position: 459-615
Cow position: chr17:39012770-39012922 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 99, 18

Conread position: 459-631
Cow position: chr17:14278109-14278283 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 137
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 63, 0

Conread position: 459-637
Cow position: chr17:7205468-7205646 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 146
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 61, 38

Conread position: 459-645
Cow position: chr17:12342434-12342250 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 112

Conread position: 459-646
Cow position: chr17:10769464-10769272 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 61, 0

Conread position: 459-648
Cow position: chr17:20234258-20234452 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 66, 150

Conread position: 460-612
Cow position: chr17:33913527-33913373 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 82

Conread position: 460-631
Cow position: chr17:19239831-19239660 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 54, 21

Conread position: 460-637
Cow position: chr17:10886361-10886186 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 74

Conread position: 460-637
Cow position: chr17:33386469-33386648 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 24, 82

Conread position: 460-638
Cow position: chr17:8615789-8615620 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 98, 20

Conread position: 461-628
Cow position: chr17:23147468-23147635 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 59, 43

Conread position: 461-647
Cow position: chr17:10633999-10633813 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 125

Conread position: 463-639
Cow position: chr17:36400153-36400325 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 96, 133

Conread position: 466-616
Cow position: chr17:5041352-5041201 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 31

Conread position: 466-636
Cow position: chr17:33925964-33925792 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 54, 0

Conread position: 467-589
Cow position: chr17:8926162-8926039 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 99, 0

Conread position: 467-644
Cow position: chr17:7861647-7861468 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 469-631
Cow position: chr17:1525766-1525607 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 50, 129

Conread position: 469-631
Cow position: chr17:7163838-7163673 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 470-628
Cow position: chr17:36173915-36173750 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 136
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 89, 138

Conread position: 473-631
Cow position: chr17:24880801-24880960 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 129
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 86, 0

Conread position: 473-637
Cow position: chr17:29270795-29270640 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 87, 0

Conread position: 473-644
Cow position: chr17:8093908-8094074 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 85, 102

Conread position: 474-637
Cow position: chr17:9927420-9927584 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 38

Conread position: 476-646
Cow position: chr17:34784352-34784517 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 12, 66

Conread position: 478-632
Cow position: chr17:40815698-40815540 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 32

Conread position: 480-639
Cow position: chr17:14661476-14661318 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 82, 49

Conread position: 481-600
Cow position: chr17:27781135-27781255 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 481-620
Cow position: chr17:11826388-11826248 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 77, 0

Conread position: 481-644
Cow position: chr17:8832074-8831910 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 76, 0

Conread position: 484-632
Cow position: chr17:2007012-2007155 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 75, 6

Conread position: 491-648
Cow position: chr17:42775188-42775030 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 7

Conread position: 494-646
Cow position: chr17:18173746-18173596 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 69, 48

Conread position: 496-618
Cow position: chr17:35212441-35212563 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 105
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 63, 45

Conread position: 496-631
Cow position: chr17:5381035-5381171 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 24, 46

Conread position: 503-638
Cow position: chr17:7029909-7029772 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 510-627
Cow position: chr17:37342194-37342075 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 513-616
Cow position: chr17:25144985-25144882 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 46, 28

Conread position: 516-632
Cow position: chr17:6558958-6559075 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 521-636
Cow position: chr17:3813552-3813436 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Show alignments to all cow chromosomes.