Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3 |
| Conread position: | 311-606 |
| Cow position: | chr18:48458498-48458796 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 41, 82 |
| Conread position: | 436-643 |
| Cow position: | chr18:51240977-51241183 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 450-595 |
| Cow position: | chr18:39211045-39210903 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 107, 34 |
| Conread position: | 452-637 |
| Cow position: | chr18:21574953-21575129 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 452-639 |
| Cow position: | chr18:5755949-5756133 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 41, 5 |
| Conread position: | 452-639 |
| Cow position: | chr18:15831626-15831448 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 453-632 |
| Cow position: | chr18:24364088-24363915 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 27 |
| Conread position: | 453-636 |
| Cow position: | chr18:10687629-10687444 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 87, 150 |
| Conread position: | 455-584 |
| Cow position: | chr18:1495273-1495403 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 455-586 |
| Cow position: | chr18:25002919-25002788 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 80 |
| Conread position: | 455-592 |
| Cow position: | chr18:23424892-23425026 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 32 |
| Conread position: | 455-603 |
| Cow position: | chr18:16298075-16298224 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 455-606 |
| Cow position: | chr18:32909019-32909169 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 7, 80 |
| Conread position: | 455-615 |
| Cow position: | chr18:44400420-44400577 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 455-616 |
| Cow position: | chr18:16726620-16726780 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 16 |
| Conread position: | 455-618 |
| Cow position: | chr18:42061046-42061209 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 103, 75 |
| Conread position: | 455-626 |
| Cow position: | chr18:43555105-43554940 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 87 |
| Conread position: | 455-628 |
| Cow position: | chr18:51537710-51537544 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 101, 82 |
| Conread position: | 455-629 |
| Cow position: | chr18:40202834-40202666 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 60 |
| Conread position: | 455-632 |
| Cow position: | chr18:2438793-2438619 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 62, 148 |
| Conread position: | 455-632 |
| Cow position: | chr18:35767143-35767316 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 455-632 |
| Cow position: | chr18:35797593-35797758 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 455-634 |
| Cow position: | chr18:25970662-25970497 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 104, 22 |
| Conread position: | 455-634 |
| Cow position: | chr18:51298452-51298629 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 455-636 |
| Cow position: | chr18:43712017-43712198 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 31, 104 |
| Conread position: | 455-637 |
| Cow position: | chr18:1190749-1190569 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 455-637 |
| Cow position: | chr18:38126478-38126297 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 104, 87 |
| Conread position: | 455-637 |
| Cow position: | chr18:50700657-50700837 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 84 |
| Conread position: | 455-639 |
| Cow position: | chr18:16842089-16841896 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 455-640 |
| Cow position: | chr18:40893246-40893430 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 455-640 |
| Cow position: | chr18:46873891-46873713 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 455-644 |
| Cow position: | chr18:23714914-23714711 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 455-646 |
| Cow position: | chr18:55697050-55696867 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 455-647 |
| Cow position: | chr18:34021358-34021549 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 104, 75 |
| Conread position: | 455-648 |
| Cow position: | chr18:6157887-6158073 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 455-648 |
| Cow position: | chr18:26372890-26373083 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 180 |
| Conread position: | 455-648 |
| Cow position: | chr18:51587574-51587383 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 186, 105 |
| Conread position: | 456-615 |
| Cow position: | chr18:43113974-43113818 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 456-631 |
| Cow position: | chr18:10101463-10101632 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 100, 24 |
| Conread position: | 456-632 |
| Cow position: | chr18:30566584-30566411 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 102, 17 |
| Conread position: | 456-635 |
| Cow position: | chr18:20127135-20126957 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 63, 145 |
| Conread position: | 456-635 |
| Cow position: | chr18:48036789-48036968 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 66, 115 |
| Conread position: | 456-637 |
| Cow position: | chr18:33843115-33842932 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 456-638 |
| Cow position: | chr18:26843128-26842944 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 456-646 |
| Cow position: | chr18:15689256-15689443 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 143 |
| Conread position: | 456-646 |
| Cow position: | chr18:51271782-51271583 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 458-627 |
| Cow position: | chr18:248843-248672 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 459-631 |
| Cow position: | chr18:28297889-28297717 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 66, 14 |
| Conread position: | 459-632 |
| Cow position: | chr18:21139874-21140050 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 83 |
| Conread position: | 459-637 |
| Cow position: | chr18:48717964-48717793 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 99 |
| Conread position: | 459-642 |
| Cow position: | chr18:24221548-24221725 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 21 |
| Conread position: | 459-648 |
| Cow position: | chr18:45961298-45961109 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 60, 124 |
| Conread position: | 461-612 |
| Cow position: | chr18:24855868-24855716 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 461-637 |
| Cow position: | chr18:22411636-22411459 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 107 |
| Conread position: | 464-613 |
| Cow position: | chr18:21706205-21706055 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 466-628 |
| Cow position: | chr18:19363916-19364076 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 466-646 |
| Cow position: | chr18:39503718-39503537 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 473-635 |
| Cow position: | chr18:44493498-44493335 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 138 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 473-648 |
| Cow position: | chr18:29949737-29949907 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 474-594 |
| Cow position: | chr18:44408406-44408528 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 474-646 |
| Cow position: | chr18:4378756-4378927 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 476-620 |
| Cow position: | chr18:35607916-35608061 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 478-633 |
| Cow position: | chr18:36478327-36478476 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 479-640 |
| Cow position: | chr18:7409309-7409149 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 6, 121 |
| Conread position: | 480-628 |
| Cow position: | chr18:11362243-11362393 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 482-632 |
| Cow position: | chr18:4040167-4040316 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 485-645 |
| Cow position: | chr18:28794837-28795000 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 112 |
| Conread position: | 491-628 |
| Cow position: | chr18:14520041-14520175 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 494-620 |
| Cow position: | chr18:42967492-42967368 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 495-646 |
| Cow position: | chr18:14431805-14431655 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 497-637 |
| Cow position: | chr18:23652403-23652261 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 498-635 |
| Cow position: | chr18:16448556-16448689 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 61, 104 |
| Conread position: | 507-636 |
| Cow position: | chr18:4890777-4890903 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 508-631 |
| Cow position: | chr18:23807617-23807492 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 518-628 |
| Cow position: | chr18:15267957-15267846 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 518-633 |
| Cow position: | chr18:24671761-24671649 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 535-632 |
| Cow position: | chr18:36911008-36910911 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 24, 34 |
Show alignments to all cow chromosomes.