Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3 |
| Conread position: | 434-529 |
| Cow position: | chr19:14578382-14578285 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 434-648 |
| Cow position: | chr19:11147647-11147439 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 435-637 |
| Cow position: | chr19:39250238-39250431 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 446-582 |
| Cow position: | chr19:47771614-47771749 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 112, 83 |
| Conread position: | 452-593 |
| Cow position: | chr19:35064205-35064060 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 452-635 |
| Cow position: | chr19:12040605-12040791 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 151 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 452-637 |
| Cow position: | chr19:31984660-31984475 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 116 |
| Conread position: | 453-599 |
| Cow position: | chr19:3080451-3080604 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 453-636 |
| Cow position: | chr19:40026940-40026759 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 67, 44 |
| Conread position: | 453-647 |
| Cow position: | chr19:14254738-14254546 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 175, 35 |
| Conread position: | 455-565 |
| Cow position: | chr19:10207602-10207711 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 455-573 |
| Cow position: | chr19:9100138-9100258 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 455-596 |
| Cow position: | chr19:6735236-6735092 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 455-609 |
| Cow position: | chr19:7839049-7838902 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 455-620 |
| Cow position: | chr19:904972-905123 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 104, 37 |
| Conread position: | 455-621 |
| Cow position: | chr19:36461537-36461370 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 91, 86 |
| Conread position: | 455-624 |
| Cow position: | chr19:9092818-9092650 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 59, 87 |
| Conread position: | 455-628 |
| Cow position: | chr19:20292100-20291927 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 455-628 |
| Cow position: | chr19:25271423-25271253 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 455-631 |
| Cow position: | chr19:38871060-38871237 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 455-632 |
| Cow position: | chr19:2342475-2342646 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 455-632 |
| Cow position: | chr19:21285086-21284910 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 455-632 |
| Cow position: | chr19:35344918-35345098 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 455-632 |
| Cow position: | chr19:36976920-36976742 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 455-635 |
| Cow position: | chr19:47783774-47783590 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 39, 116 |
| Conread position: | 455-636 |
| Cow position: | chr19:30935779-30935596 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 104, 86 |
| Conread position: | 455-637 |
| Cow position: | chr19:952686-952863 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 455-637 |
| Cow position: | chr19:9387627-9387809 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 455-637 |
| Cow position: | chr19:11876708-11876528 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 455-637 |
| Cow position: | chr19:19246766-19246945 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 455-639 |
| Cow position: | chr19:32214792-32214974 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 104, 85 |
| Conread position: | 455-641 |
| Cow position: | chr19:2280648-2280467 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 455-646 |
| Cow position: | chr19:46497929-46498112 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 104, 118 |
| Conread position: | 455-647 |
| Cow position: | chr19:31381010-31380823 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 104, 30 |
| Conread position: | 455-647 |
| Cow position: | chr19:31614102-31614293 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 89, 25 |
| Conread position: | 455-648 |
| Cow position: | chr19:5648673-5648484 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 158 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 26, 102 |
| Conread position: | 456-591 |
| Cow position: | chr19:36318302-36318434 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 456-617 |
| Cow position: | chr19:53738331-53738488 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 456-625 |
| Cow position: | chr19:1713148-1712978 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 42, 86 |
| Conread position: | 456-632 |
| Cow position: | chr19:7029912-7030087 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 103, 124 |
| Conread position: | 456-634 |
| Cow position: | chr19:48478974-48479149 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 103, 24 |
| Conread position: | 456-635 |
| Cow position: | chr19:31126790-31126970 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 456-646 |
| Cow position: | chr19:17020273-17020463 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 145 |
| Conread position: | 457-637 |
| Cow position: | chr19:22932555-22932373 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 458-556 |
| Cow position: | chr19:33672732-33672634 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 459-579 |
| Cow position: | chr19:21091094-21091211 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 111, 25 |
| Conread position: | 459-637 |
| Cow position: | chr19:46713632-46713817 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 459-639 |
| Cow position: | chr19:26003620-26003438 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 61, 178 |
| Conread position: | 459-643 |
| Cow position: | chr19:28842364-28842178 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 459-648 |
| Cow position: | chr19:10971102-10970904 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 459-648 |
| Cow position: | chr19:33290479-33290670 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 86 |
| Conread position: | 460-595 |
| Cow position: | chr19:3124051-3123924 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 98, 20 |
| Conread position: | 460-615 |
| Cow position: | chr19:5986231-5986388 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 460-625 |
| Cow position: | chr19:4824986-4824819 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 460-630 |
| Cow position: | chr19:38025689-38025861 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 460-636 |
| Cow position: | chr19:54225309-54225138 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 460-637 |
| Cow position: | chr19:39223106-39222937 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 99, 29 |
| Conread position: | 463-648 |
| Cow position: | chr19:40450018-40450205 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 57, 36 |
| Conread position: | 464-618 |
| Cow position: | chr19:42102597-42102444 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 6, 32 |
| Conread position: | 464-620 |
| Cow position: | chr19:33882185-33882031 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 79 |
| Conread position: | 466-616 |
| Cow position: | chr19:42896462-42896618 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 466-628 |
| Cow position: | chr19:1153208-1153372 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 466-637 |
| Cow position: | chr19:16659568-16659394 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 466-641 |
| Cow position: | chr19:24721684-24721854 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 6, 87 |
| Conread position: | 467-637 |
| Cow position: | chr19:5754783-5754618 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 52, 82 |
| Conread position: | 469-626 |
| Cow position: | chr19:35540300-35540465 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 469-629 |
| Cow position: | chr19:46306332-46306179 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 89, 119 |
| Conread position: | 470-604 |
| Cow position: | chr19:42416446-42416317 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 470-646 |
| Cow position: | chr19:25594170-25594340 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 88, 114 |
| Conread position: | 471-635 |
| Cow position: | chr19:11759222-11759056 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 474-632 |
| Cow position: | chr19:54817523-54817364 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 474-640 |
| Cow position: | chr19:50786525-50786362 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 45, 6 |
| Conread position: | 474-645 |
| Cow position: | chr19:56008713-56008549 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 85, 11 |
| Conread position: | 480-637 |
| Cow position: | chr19:33686102-33686258 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 481-620 |
| Cow position: | chr19:55236503-55236643 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 481-641 |
| Cow position: | chr19:43727152-43727311 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 489-637 |
| Cow position: | chr19:38708176-38708328 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 53 |
| Conread position: | 490-637 |
| Cow position: | chr19:36380251-36380397 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 51 |
| Conread position: | 496-637 |
| Cow position: | chr19:35084109-35083972 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 43 |
| Conread position: | 497-628 |
| Cow position: | chr19:5678577-5678710 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 497-628 |
| Cow position: | chr19:5678787-5678920 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 501-635 |
| Cow position: | chr19:41459233-41459368 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 501-637 |
| Cow position: | chr19:30653055-30652917 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 513-647 |
| Cow position: | chr19:32989376-32989237 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.