Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3 |
| Conread position: | 409-632 |
| Cow position: | chr20:32587367-32587579 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 427-640 |
| Cow position: | chr20:24868996-24868788 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 429-628 |
| Cow position: | chr20:41534483-41534677 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 434-648 |
| Cow position: | chr20:32972572-32972785 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 14, 106 |
| Conread position: | 444-612 |
| Cow position: | chr20:23604705-23604531 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 448-632 |
| Cow position: | chr20:39220676-39220501 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 111, 8 |
| Conread position: | 452-635 |
| Cow position: | chr20:4934026-4933844 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 107, 7 |
| Conread position: | 452-637 |
| Cow position: | chr20:21236700-21236876 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 106, 8 |
| Conread position: | 452-639 |
| Cow position: | chr20:24849849-24850033 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 67, 146 |
| Conread position: | 453-631 |
| Cow position: | chr20:25146826-25147000 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 96 |
| Conread position: | 453-632 |
| Cow position: | chr20:35924737-35924564 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 453-636 |
| Cow position: | chr20:8261959-8262141 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 66, 145 |
| Conread position: | 453-646 |
| Cow position: | chr20:14471528-14471327 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 105, 137 |
| Conread position: | 455-605 |
| Cow position: | chr20:25274243-25274096 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 103, 45 |
| Conread position: | 455-610 |
| Cow position: | chr20:19865298-19865449 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 100, 7 |
| Conread position: | 455-615 |
| Cow position: | chr20:32668020-32668175 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 103, 17 |
| Conread position: | 455-620 |
| Cow position: | chr20:4204337-4204497 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 455-620 |
| Cow position: | chr20:10759427-10759265 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 92, 134 |
| Conread position: | 455-620 |
| Cow position: | chr20:27001436-27001594 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 455-620 |
| Cow position: | chr20:42254907-42255070 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 455-626 |
| Cow position: | chr20:16979794-16979966 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 455-631 |
| Cow position: | chr20:38858374-38858213 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 455-632 |
| Cow position: | chr20:13609019-13608847 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 455-635 |
| Cow position: | chr20:7100827-7101012 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 455-635 |
| Cow position: | chr20:13465555-13465732 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 104, 84 |
| Conread position: | 455-636 |
| Cow position: | chr20:23163855-23163678 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 455-637 |
| Cow position: | chr20:4157467-4157644 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 455-637 |
| Cow position: | chr20:7386605-7386779 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 33 |
| Conread position: | 455-637 |
| Cow position: | chr20:14679668-14679845 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 455-637 |
| Cow position: | chr20:25823324-25823505 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 105, 30 |
| Conread position: | 455-640 |
| Cow position: | chr20:1205885-1205705 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 104, 47 |
| Conread position: | 455-644 |
| Cow position: | chr20:24644099-24643915 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 455-647 |
| Cow position: | chr20:19266203-19266386 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 182, 25 |
| Conread position: | 456-630 |
| Cow position: | chr20:40511710-40511532 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 456-632 |
| Cow position: | chr20:5763247-5763071 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 102, 134 |
| Conread position: | 456-632 |
| Cow position: | chr20:6903360-6903536 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 130 |
| Conread position: | 456-632 |
| Cow position: | chr20:17670230-17670402 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 103, 107 |
| Conread position: | 456-637 |
| Cow position: | chr20:17363609-17363430 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 456-637 |
| Cow position: | chr20:21518696-21518872 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 103, 12 |
| Conread position: | 456-639 |
| Cow position: | chr20:25686302-25686117 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 456-639 |
| Cow position: | chr20:30855707-30855529 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 122, 23 |
| Conread position: | 457-639 |
| Cow position: | chr20:15073788-15073598 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 102, 32 |
| Conread position: | 457-647 |
| Cow position: | chr20:2456080-2456263 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 101, 23 |
| Conread position: | 458-602 |
| Cow position: | chr20:35683353-35683212 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 100, 22 |
| Conread position: | 458-625 |
| Cow position: | chr20:220663-220825 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 458-640 |
| Cow position: | chr20:26750160-26749982 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 171, 14 |
| Conread position: | 459-618 |
| Cow position: | chr20:39656299-39656452 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 99, 21 |
| Conread position: | 459-632 |
| Cow position: | chr20:9706870-9706695 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 459-632 |
| Cow position: | chr20:10838163-10837992 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 117 |
| Conread position: | 459-648 |
| Cow position: | chr20:2430593-2430778 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 459-648 |
| Cow position: | chr20:20359733-20359543 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 155 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 55, 144 |
| Conread position: | 460-632 |
| Cow position: | chr20:15241714-15241541 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 462-620 |
| Cow position: | chr20:31081090-31081251 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 462-634 |
| Cow position: | chr20:17397207-17397040 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 462-644 |
| Cow position: | chr20:41110043-41109862 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 25 |
| Conread position: | 462-645 |
| Cow position: | chr20:33178464-33178287 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 162, 35 |
| Conread position: | 464-627 |
| Cow position: | chr20:13617280-13617448 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 464-629 |
| Cow position: | chr20:14513085-14513248 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 6, 137 |
| Conread position: | 466-632 |
| Cow position: | chr20:1576150-1576316 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 125 |
| Conread position: | 469-632 |
| Cow position: | chr20:6105094-6104929 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 474-628 |
| Cow position: | chr20:34108169-34108327 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 478-636 |
| Cow position: | chr20:23235099-23235258 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 66, 62 |
| Conread position: | 480-644 |
| Cow position: | chr20:311391-311556 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 481-637 |
| Cow position: | chr20:11476591-11476432 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 481-644 |
| Cow position: | chr20:39669016-39669179 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 78, 102 |
| Conread position: | 481-645 |
| Cow position: | chr20:3105087-3105251 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 77, 146 |
| Conread position: | 483-648 |
| Cow position: | chr20:29521156-29520996 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 37, 45 |
| Conread position: | 485-637 |
| Cow position: | chr20:37136161-37136315 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 485-647 |
| Cow position: | chr20:7873909-7873748 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 486-637 |
| Cow position: | chr20:38184114-38184263 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 495-628 |
| Cow position: | chr20:6571698-6571828 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 112 |
| Conread position: | 496-619 |
| Cow position: | chr20:21698839-21698964 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 498-645 |
| Cow position: | chr20:8556758-8556610 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 500-632 |
| Cow position: | chr20:29741318-29741187 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 510-639 |
| Cow position: | chr20:32975302-32975427 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 87 |
| Conread position: | 512-628 |
| Cow position: | chr20:922086-922204 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 517-640 |
| Cow position: | chr20:12430478-12430354 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 30 |
Show alignments to all cow chromosomes.