Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3 |
| Conread position: | 431-637 |
| Cow position: | chr23:347765-347561 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 19, 107 |
| Conread position: | 448-647 |
| Cow position: | chr23:11564373-11564182 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 124, 8 |
| Conread position: | 452-630 |
| Cow position: | chr23:8930134-8929959 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 107, 7 |
| Conread position: | 452-638 |
| Cow position: | chr23:22660579-22660399 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 107, 7 |
| Conread position: | 452-640 |
| Cow position: | chr23:17092494-17092310 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 107, 5 |
| Conread position: | 452-640 |
| Cow position: | chr23:22272476-22272285 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 5 |
| Conread position: | 453-628 |
| Cow position: | chr23:11751131-11750955 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 453-632 |
| Cow position: | chr23:18326812-18326987 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 453-636 |
| Cow position: | chr23:26004035-26004211 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 455-613 |
| Cow position: | chr23:40651468-40651308 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 455-620 |
| Cow position: | chr23:28894949-28894784 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 455-627 |
| Cow position: | chr23:28721230-28721060 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 104, 84 |
| Conread position: | 455-628 |
| Cow position: | chr23:17000712-17000876 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 104, 86 |
| Conread position: | 455-631 |
| Cow position: | chr23:13359832-13360008 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 146 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 104, 44 |
| Conread position: | 455-631 |
| Cow position: | chr23:40525978-40525808 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 149, 96 |
| Conread position: | 455-634 |
| Cow position: | chr23:19636255-19636077 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 455-635 |
| Cow position: | chr23:6683753-6683930 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 144 |
| Conread position: | 455-635 |
| Cow position: | chr23:15872689-15872510 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 46, 89 |
| Conread position: | 455-636 |
| Cow position: | chr23:14840506-14840330 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 101, 42 |
| Conread position: | 455-636 |
| Cow position: | chr23:21866747-21866928 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 151 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 101, 60 |
| Conread position: | 455-637 |
| Cow position: | chr23:7611273-7611447 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 455-637 |
| Cow position: | chr23:16793591-16793768 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 103, 22 |
| Conread position: | 455-637 |
| Cow position: | chr23:26861447-26861620 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 104, 47 |
| Conread position: | 455-638 |
| Cow position: | chr23:38941627-38941810 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 103, 87 |
| Conread position: | 455-640 |
| Cow position: | chr23:21276016-21275826 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 455-640 |
| Cow position: | chr23:35155380-35155564 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 154 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 64, 52 |
| Conread position: | 455-644 |
| Cow position: | chr23:792025-791841 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 455-647 |
| Cow position: | chr23:5389706-5389897 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 154 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 104, 59 |
| Conread position: | 455-647 |
| Cow position: | chr23:21847759-21847954 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 455-648 |
| Cow position: | chr23:1717544-1717350 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 455-648 |
| Cow position: | chr23:14126575-14126761 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 455-648 |
| Cow position: | chr23:37224061-37223875 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 104, 31 |
| Conread position: | 456-584 |
| Cow position: | chr23:19791985-19792110 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 456-629 |
| Cow position: | chr23:29272121-29272290 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 102, 142 |
| Conread position: | 456-632 |
| Cow position: | chr23:36082589-36082768 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 456-636 |
| Cow position: | chr23:40891368-40891552 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 456-640 |
| Cow position: | chr23:20585692-20585509 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 103, 34 |
| Conread position: | 456-644 |
| Cow position: | chr23:5603279-5603080 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 457-644 |
| Cow position: | chr23:35362770-35362596 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 102, 46 |
| Conread position: | 458-626 |
| Cow position: | chr23:9812223-9812061 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 101, 51 |
| Conread position: | 459-632 |
| Cow position: | chr23:30307917-30308086 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 100, 131 |
| Conread position: | 459-635 |
| Cow position: | chr23:12366459-12366284 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 163, 38 |
| Conread position: | 459-635 |
| Cow position: | chr23:26051047-26051225 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 460-637 |
| Cow position: | chr23:30255871-30256054 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 460-639 |
| Cow position: | chr23:20171589-20171770 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 177 |
| Conread position: | 461-630 |
| Cow position: | chr23:22826430-22826253 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 462-616 |
| Cow position: | chr23:40609379-40609533 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 79 |
| Conread position: | 465-609 |
| Cow position: | chr23:31096877-31096732 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 466-623 |
| Cow position: | chr23:1552631-1552782 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 466-645 |
| Cow position: | chr23:35177334-35177517 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 466-647 |
| Cow position: | chr23:28701003-28701186 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 469-626 |
| Cow position: | chr23:11434241-11434086 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 89, 111 |
| Conread position: | 475-647 |
| Cow position: | chr23:33927832-33928006 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 476-632 |
| Cow position: | chr23:19981659-19981501 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 477-647 |
| Cow position: | chr23:21782446-21782279 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 145, 27 |
| Conread position: | 480-647 |
| Cow position: | chr23:24411035-24411203 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 40, 156 |
| Conread position: | 481-631 |
| Cow position: | chr23:1550908-1551059 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 481-632 |
| Cow position: | chr23:26217592-26217738 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 482-645 |
| Cow position: | chr23:4956051-4956215 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 488-632 |
| Cow position: | chr23:30736109-30735967 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 71, 51 |
| Conread position: | 495-644 |
| Cow position: | chr23:16072301-16072156 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 496-640 |
| Cow position: | chr23:26067138-26067282 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 20, 103 |
| Conread position: | 510-634 |
| Cow position: | chr23:10424869-10424989 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 8, 60 |
| Conread position: | 510-639 |
| Cow position: | chr23:645441-645567 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 515-636 |
| Cow position: | chr23:37651972-37651850 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 517-648 |
| Cow position: | chr23:40492807-40492938 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 6 |
Show alignments to all cow chromosomes.