Cow genome map

Conread name: Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3

Conread position: 399-636
Cow position: chr24:41458043-41458275 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 143
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 61, 104

Conread position: 431-615
Cow position: chr24:10837849-10838024 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 127, 49

Conread position: 439-639
Cow position: chr24:42916416-42916225 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 42

Conread position: 452-625
Cow position: chr24:16481326-16481165 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 106, 5

Conread position: 453-630
Cow position: chr24:24311483-24311656 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 148, 27

Conread position: 453-635
Cow position: chr24:10546050-10546229 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 105, 26

Conread position: 453-648
Cow position: chr24:23176721-23176530 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 106, 83

Conread position: 454-625
Cow position: chr24:28349553-28349732 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 146
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 104, 0

Conread position: 454-632
Cow position: chr24:32158295-32158119 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 90, 21

Conread position: 455-596
Cow position: chr24:19611990-19612127 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 103, 25

Conread position: 455-618
Cow position: chr24:25165012-25165177 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 65, 0

Conread position: 455-620
Cow position: chr24:26455820-26455985 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 134
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 104, 135

Conread position: 455-623
Cow position: chr24:11201665-11201496 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 103, 25

Conread position: 455-627
Cow position: chr24:27912707-27912877 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 35, 85

Conread position: 455-628
Cow position: chr24:30860615-30860786 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 111, 75

Conread position: 455-632
Cow position: chr24:16055533-16055355 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 143
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 104, 0

Conread position: 455-632
Cow position: chr24:28279603-28279779 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 145
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 104, 143

Conread position: 455-632
Cow position: chr24:34369028-34368851 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 146
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 104, 112

Conread position: 455-635
Cow position: chr24:6427683-6427862 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 152
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 61, 146

Conread position: 455-635
Cow position: chr24:23824443-23824273 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 64, 17

Conread position: 455-635
Cow position: chr24:28335584-28335404 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 103, 130

Conread position: 455-635
Cow position: chr24:38291839-38292014 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 104, 17

Conread position: 455-636
Cow position: chr24:22939671-22939848 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 103, 42

Conread position: 455-636
Cow position: chr24:39350237-39350065 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 62, 16

Conread position: 455-637
Cow position: chr24:2143728-2143911 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 104, 75

Conread position: 455-637
Cow position: chr24:19754555-19754739 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 103, 25

Conread position: 455-637
Cow position: chr24:27054389-27054570 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 62, 139

Conread position: 455-637
Cow position: chr24:40809383-40809206 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 46, 25

Conread position: 455-637
Cow position: chr24:42943142-42942958 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 150
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 30, 88

Conread position: 455-639
Cow position: chr24:35827716-35827906 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 143, 0

Conread position: 455-644
Cow position: chr24:6507788-6507602 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 103, 22

Conread position: 455-645
Cow position: chr24:31378735-31378917 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 455-646
Cow position: chr24:14337713-14337898 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 104, 61

Conread position: 455-646
Cow position: chr24:14746627-14746813 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 64, 87

Conread position: 456-635
Cow position: chr24:31258355-31258181 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 102, 29

Conread position: 458-632
Cow position: chr24:44074473-44074303 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 98, 37

Conread position: 458-636
Cow position: chr24:33290336-33290160 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 43, 0

Conread position: 458-637
Cow position: chr24:22888573-22888753 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 101, 105

Conread position: 458-648
Cow position: chr24:39742797-39742983 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 101, 12

Conread position: 459-619
Cow position: chr24:5849394-5849233 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 99, 0

Conread position: 459-628
Cow position: chr24:15617487-15617323 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 100, 21

Conread position: 459-628
Cow position: chr24:32059477-32059306 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 142

Conread position: 459-631
Cow position: chr24:12136123-12136296 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 61, 165

Conread position: 459-632
Cow position: chr24:39764851-39765010 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 97, 15

Conread position: 460-637
Cow position: chr24:7079768-7079944 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 145
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 59, 20

Conread position: 462-648
Cow position: chr24:1438285-1438098 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 58, 155

Conread position: 469-592
Cow position: chr24:39474411-39474287 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 99

Conread position: 469-621
Cow position: chr24:14617653-14617802 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 130, 0

Conread position: 471-632
Cow position: chr24:32758765-32758606 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 82, 13

Conread position: 471-648
Cow position: chr24:4785680-4785502 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 43, 72

Conread position: 474-645
Cow position: chr24:32302707-32302533 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 11

Conread position: 480-637
Cow position: chr24:6677649-6677815 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 481-632
Cow position: chr24:17981192-17981341 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 89, 16

Conread position: 481-632
Cow position: chr24:41332579-41332427 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 77, 0

Conread position: 481-632
Cow position: chr24:44929353-44929505 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 78, 0

Conread position: 481-647
Cow position: chr24:36801381-36801552 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 60, 28

Conread position: 491-635
Cow position: chr24:2531597-2531741 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 141, 28

Conread position: 496-635
Cow position: chr24:15909639-15909780 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 118
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 24, 0

Conread position: 502-646
Cow position: chr24:6246364-6246218 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 57, 0

Conread position: 508-618
Cow position: chr24:6940745-6940855 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 52, 25

Conread position: 509-605
Cow position: chr24:23684855-23684757 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 513-631
Cow position: chr24:44038787-44038906 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 515-646
Cow position: chr24:40611286-40611416 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 57

Conread position: 518-644
Cow position: chr24:13296631-13296510 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 15

Conread position: 519-638
Cow position: chr24:42580598-42580478 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 529-647
Cow position: chr24:26458184-26458071 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 23, 0

Show alignments to all cow chromosomes.