Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3 |
| Conread position: | 428-631 |
| Cow position: | chr25:15368669-15368871 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 429-647 |
| Cow position: | chr25:20885116-20884897 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 28, 115 |
| Conread position: | 452-620 |
| Cow position: | chr25:8080723-8080891 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 452-637 |
| Cow position: | chr25:33245921-33246096 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 60, 5 |
| Conread position: | 453-646 |
| Cow position: | chr25:22575526-22575336 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 176, 75 |
| Conread position: | 455-599 |
| Cow position: | chr25:10748498-10748355 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 103, 16 |
| Conread position: | 455-601 |
| Cow position: | chr25:10012058-10011912 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 107 |
| Conread position: | 455-617 |
| Cow position: | chr25:13562438-13562595 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 455-618 |
| Cow position: | chr25:13799951-13800115 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 455-620 |
| Cow position: | chr25:13560211-13560048 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 104, 70 |
| Conread position: | 455-620 |
| Cow position: | chr25:20811373-20811208 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 101, 142 |
| Conread position: | 455-627 |
| Cow position: | chr25:23248740-23248568 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 455-629 |
| Cow position: | chr25:20624931-20624762 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 455-630 |
| Cow position: | chr25:8576694-8576869 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 64, 106 |
| Conread position: | 455-631 |
| Cow position: | chr25:29312334-29312160 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 73 |
| Conread position: | 455-635 |
| Cow position: | chr25:41094135-41093956 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 104, 74 |
| Conread position: | 455-636 |
| Cow position: | chr25:26457677-26457495 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 149 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 455-636 |
| Cow position: | chr25:34970465-34970637 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 455-637 |
| Cow position: | chr25:18000529-18000348 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 455-639 |
| Cow position: | chr25:14075304-14075489 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 104, 108 |
| Conread position: | 455-640 |
| Cow position: | chr25:14570375-14570553 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 104, 36 |
| Conread position: | 455-644 |
| Cow position: | chr25:5365529-5365722 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 162 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 39, 152 |
| Conread position: | 455-644 |
| Cow position: | chr25:12932626-12932816 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 455-644 |
| Cow position: | chr25:26240539-26240732 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 455-646 |
| Cow position: | chr25:23410668-23410852 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 455-647 |
| Cow position: | chr25:27534918-27534726 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 455-648 |
| Cow position: | chr25:24405733-24405539 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 456-632 |
| Cow position: | chr25:36501241-36501062 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 456-635 |
| Cow position: | chr25:18448814-18448993 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 64, 79 |
| Conread position: | 456-637 |
| Cow position: | chr25:30021075-30021256 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 456-640 |
| Cow position: | chr25:5407743-5407918 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 64, 107 |
| Conread position: | 456-645 |
| Cow position: | chr25:15024913-15025099 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 456-647 |
| Cow position: | chr25:6178035-6178227 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 456-648 |
| Cow position: | chr25:17701992-17701797 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 457-639 |
| Cow position: | chr25:40956982-40956803 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 102, 80 |
| Conread position: | 458-632 |
| Cow position: | chr25:4716260-4716434 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 100, 56 |
| Conread position: | 459-632 |
| Cow position: | chr25:20428324-20428496 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 70, 42 |
| Conread position: | 459-632 |
| Cow position: | chr25:35109265-35109081 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 460-628 |
| Cow position: | chr25:20076502-20076672 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 461-628 |
| Cow position: | chr25:33205072-33204911 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 461-646 |
| Cow position: | chr25:34379099-34378904 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 107 |
| Conread position: | 462-628 |
| Cow position: | chr25:9109350-9109513 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 462-632 |
| Cow position: | chr25:18239516-18239689 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 465-647 |
| Cow position: | chr25:31732311-31732122 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 173 |
| Conread position: | 466-648 |
| Cow position: | chr25:8512076-8511899 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 474-637 |
| Cow position: | chr25:27534666-27534514 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 475-632 |
| Cow position: | chr25:20614745-20614901 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 84, 55 |
| Conread position: | 476-638 |
| Cow position: | chr25:26652204-26652368 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 480-627 |
| Cow position: | chr25:2135234-2135080 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 480-635 |
| Cow position: | chr25:24136416-24136264 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 38, 119 |
| Conread position: | 481-628 |
| Cow position: | chr25:18228204-18228350 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 484-648 |
| Cow position: | chr25:11040968-11041126 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 75, 98 |
| Conread position: | 504-648 |
| Cow position: | chr25:36506089-36505943 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 126 |
| Conread position: | 514-637 |
| Cow position: | chr25:19524385-19524261 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 532-632 |
| Cow position: | chr25:32594789-32594688 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.