Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3 |
| Conread position: | 427-636 |
| Cow position: | chr27:19741426-19741638 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 440-638 |
| Cow position: | chr27:11746556-11746358 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 119, 16 |
| Conread position: | 440-647 |
| Cow position: | chr27:2403312-2403516 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 118, 40 |
| Conread position: | 452-632 |
| Cow position: | chr27:30365274-30365094 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 106, 5 |
| Conread position: | 452-635 |
| Cow position: | chr27:25998658-25998479 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 67, 5 |
| Conread position: | 452-648 |
| Cow position: | chr27:20766003-20766192 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 85, 28 |
| Conread position: | 453-636 |
| Cow position: | chr27:21578618-21578805 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 152 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 453-637 |
| Cow position: | chr27:25970355-25970178 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 106, 31 |
| Conread position: | 453-645 |
| Cow position: | chr27:3922535-3922720 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 109 |
| Conread position: | 455-619 |
| Cow position: | chr27:26161455-26161293 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 455-620 |
| Cow position: | chr27:13970436-13970591 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 455-627 |
| Cow position: | chr27:27049957-27050124 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 104, 59 |
| Conread position: | 455-628 |
| Cow position: | chr27:19083762-19083937 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 455-628 |
| Cow position: | chr27:24509773-24509605 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 67, 106 |
| Conread position: | 455-630 |
| Cow position: | chr27:25880055-25879880 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 147 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 104, 26 |
| Conread position: | 455-632 |
| Cow position: | chr27:11356588-11356755 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 455-632 |
| Cow position: | chr27:12244172-12244350 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 104, 114 |
| Conread position: | 455-632 |
| Cow position: | chr27:29038987-29039164 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 64, 126 |
| Conread position: | 455-635 |
| Cow position: | chr27:19543966-19544147 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 455-637 |
| Cow position: | chr27:1536766-1536956 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 455-637 |
| Cow position: | chr27:6883987-6883813 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 455-637 |
| Cow position: | chr27:14937476-14937658 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 141, 153 |
| Conread position: | 455-637 |
| Cow position: | chr27:16525891-16526070 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 455-637 |
| Cow position: | chr27:24341858-24341673 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 455-637 |
| Cow position: | chr27:27053248-27053074 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 104, 42 |
| Conread position: | 455-638 |
| Cow position: | chr27:25982770-25982948 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 455-640 |
| Cow position: | chr27:10119125-10119315 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 455-643 |
| Cow position: | chr27:15523844-15524040 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 130, 105 |
| Conread position: | 455-646 |
| Cow position: | chr27:2354816-2355000 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 455-646 |
| Cow position: | chr27:12247632-12247448 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 455-647 |
| Cow position: | chr27:26299796-26299607 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 103, 113 |
| Conread position: | 455-648 |
| Cow position: | chr27:13005797-13005610 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 104, 22 |
| Conread position: | 455-648 |
| Cow position: | chr27:13958390-13958584 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 104, 151 |
| Conread position: | 455-648 |
| Cow position: | chr27:24333668-24333851 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 456-603 |
| Cow position: | chr27:21681372-21681520 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 20, 84 |
| Conread position: | 456-620 |
| Cow position: | chr27:21393554-21393724 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 456-632 |
| Cow position: | chr27:783652-783482 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 456-632 |
| Cow position: | chr27:23662644-23662817 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 103, 24 |
| Conread position: | 456-639 |
| Cow position: | chr27:11762749-11762930 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 64, 104 |
| Conread position: | 456-643 |
| Cow position: | chr27:15319409-15319230 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 55 |
| Conread position: | 456-646 |
| Cow position: | chr27:22225642-22225827 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 456-647 |
| Cow position: | chr27:2847807-2847614 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 87 |
| Conread position: | 459-593 |
| Cow position: | chr27:13977595-13977731 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 84 |
| Conread position: | 459-630 |
| Cow position: | chr27:6454158-6453986 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 89 |
| Conread position: | 459-648 |
| Cow position: | chr27:6159930-6159749 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 76 |
| Conread position: | 460-588 |
| Cow position: | chr27:18219342-18219217 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 460-637 |
| Cow position: | chr27:8430490-8430668 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 461-624 |
| Cow position: | chr27:6347807-6347968 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 98, 19 |
| Conread position: | 461-648 |
| Cow position: | chr27:24224951-24225137 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 98, 139 |
| Conread position: | 466-633 |
| Cow position: | chr27:26441106-26441273 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 93, 21 |
| Conread position: | 474-648 |
| Cow position: | chr27:17875207-17875383 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 476-596 |
| Cow position: | chr27:21991464-21991343 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 476-616 |
| Cow position: | chr27:11208831-11208967 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 82, 97 |
| Conread position: | 476-632 |
| Cow position: | chr27:1675082-1674925 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 480-639 |
| Cow position: | chr27:1899643-1899802 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 79, 108 |
| Conread position: | 481-636 |
| Cow position: | chr27:16493512-16493358 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 481-639 |
| Cow position: | chr27:19601300-19601143 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 148, 79 |
| Conread position: | 484-620 |
| Cow position: | chr27:9692095-9692229 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 485-623 |
| Cow position: | chr27:6037095-6036955 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 485-635 |
| Cow position: | chr27:31339830-31339980 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 485-637 |
| Cow position: | chr27:493053-492908 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 490-648 |
| Cow position: | chr27:1085033-1085187 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 498-632 |
| Cow position: | chr27:6642249-6642383 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 502-628 |
| Cow position: | chr27:7983196-7983323 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 503-632 |
| Cow position: | chr27:30447084-30446952 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 508-628 |
| Cow position: | chr27:24203113-24202992 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 33, 6 |
| Conread position: | 508-647 |
| Cow position: | chr27:23147594-23147453 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 508-648 |
| Cow position: | chr27:22237973-22238113 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 510-636 |
| Cow position: | chr27:490799-490676 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 511-627 |
| Cow position: | chr27:19056895-19057011 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 514-637 |
| Cow position: | chr27:11322498-11322379 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 516-648 |
| Cow position: | chr27:18028505-18028372 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
Show alignments to all cow chromosomes.