Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3 |
| Conread position: | 430-640 |
| Cow position: | chr28:19465409-19465195 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 436-639 |
| Cow position: | chr28:25797108-25797310 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 93, 53 |
| Conread position: | 451-648 |
| Cow position: | chr28:26311469-26311671 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 453-593 |
| Cow position: | chr28:1604822-1604962 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 453-603 |
| Cow position: | chr28:8335967-8336118 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 453-637 |
| Cow position: | chr28:9821960-9821786 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 455-584 |
| Cow position: | chr28:21873767-21873897 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 455-606 |
| Cow position: | chr28:25340280-25340429 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 104, 42 |
| Conread position: | 455-616 |
| Cow position: | chr28:11007206-11007368 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 145 |
| Conread position: | 455-619 |
| Cow position: | chr28:7805415-7805254 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 59, 87 |
| Conread position: | 455-628 |
| Cow position: | chr28:5475020-5474851 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 455-628 |
| Cow position: | chr28:11181155-11180984 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 141 |
| Conread position: | 455-629 |
| Cow position: | chr28:25564092-25564265 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 455-631 |
| Cow position: | chr28:16041210-16041040 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 455-631 |
| Cow position: | chr28:33285103-33284925 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 455-631 |
| Cow position: | chr28:34199099-34198925 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 104, 17 |
| Conread position: | 455-632 |
| Cow position: | chr28:18934461-18934639 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 455-632 |
| Cow position: | chr28:23668775-23668600 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 39, 144 |
| Conread position: | 455-635 |
| Cow position: | chr28:1202233-1202058 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 455-635 |
| Cow position: | chr28:11500880-11500704 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 39, 118 |
| Conread position: | 455-635 |
| Cow position: | chr28:15081914-15081738 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 104, 142 |
| Conread position: | 455-637 |
| Cow position: | chr28:6643275-6643090 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 455-637 |
| Cow position: | chr28:19253490-19253668 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 103, 82 |
| Conread position: | 455-637 |
| Cow position: | chr28:21570198-21570366 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 455-637 |
| Cow position: | chr28:24500212-24500396 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 46, 89 |
| Conread position: | 455-639 |
| Cow position: | chr28:31165975-31165789 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 455-645 |
| Cow position: | chr28:3769657-3769464 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 104, 39 |
| Conread position: | 455-648 |
| Cow position: | chr28:4763887-4764078 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 106, 124 |
| Conread position: | 455-648 |
| Cow position: | chr28:31373116-31373308 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 174, 98 |
| Conread position: | 456-573 |
| Cow position: | chr28:12046905-12046786 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 456-614 |
| Cow position: | chr28:20275138-20275295 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 103, 60 |
| Conread position: | 456-624 |
| Cow position: | chr28:9237323-9237492 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 103, 57 |
| Conread position: | 456-629 |
| Cow position: | chr28:7156845-7157017 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 64, 124 |
| Conread position: | 456-629 |
| Cow position: | chr28:15677894-15678069 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 456-631 |
| Cow position: | chr28:23007722-23007539 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 456-632 |
| Cow position: | chr28:26719351-26719534 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 456-637 |
| Cow position: | chr28:1608196-1608380 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 10, 146 |
| Conread position: | 456-637 |
| Cow position: | chr28:16214865-16214676 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 64, 92 |
| Conread position: | 456-639 |
| Cow position: | chr28:14508363-14508173 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 456-639 |
| Cow position: | chr28:25825854-25825674 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 103, 38 |
| Conread position: | 456-640 |
| Cow position: | chr28:4274831-4274652 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 456-646 |
| Cow position: | chr28:6993601-6993420 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 456-648 |
| Cow position: | chr28:7540149-7539954 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 157 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 459-637 |
| Cow position: | chr28:9294482-9294302 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 460-620 |
| Cow position: | chr28:20963517-20963355 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 460-632 |
| Cow position: | chr28:2517798-2517635 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 460-644 |
| Cow position: | chr28:15406073-15406250 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 99, 81 |
| Conread position: | 462-628 |
| Cow position: | chr28:23703422-23703587 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 97, 79 |
| Conread position: | 467-647 |
| Cow position: | chr28:22331078-22331250 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 92, 13 |
| Conread position: | 469-638 |
| Cow position: | chr28:3940175-3940000 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 470-626 |
| Cow position: | chr28:17362580-17362422 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 470-632 |
| Cow position: | chr28:15591301-15591458 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 470-640 |
| Cow position: | chr28:2343566-2343400 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 43 |
| Conread position: | 473-631 |
| Cow position: | chr28:3823114-3822957 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 87, 67 |
| Conread position: | 473-631 |
| Cow position: | chr28:28513507-28513667 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 473-639 |
| Cow position: | chr28:26372762-26372931 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 157 |
| Conread position: | 474-644 |
| Cow position: | chr28:6578097-6578267 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 476-647 |
| Cow position: | chr28:20308122-20308295 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 82, 5 |
| Conread position: | 476-648 |
| Cow position: | chr28:34749763-34749938 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 478-640 |
| Cow position: | chr28:15496977-15496818 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 479-640 |
| Cow position: | chr28:17625141-17624977 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 480-631 |
| Cow position: | chr28:5979955-5980101 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 79, 54 |
| Conread position: | 481-630 |
| Cow position: | chr28:22421952-22421809 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 78, 117 |
| Conread position: | 483-635 |
| Cow position: | chr28:24700808-24700961 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 484-645 |
| Cow position: | chr28:8789188-8789351 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 74, 21 |
| Conread position: | 486-639 |
| Cow position: | chr28:13061666-13061822 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 490-596 |
| Cow position: | chr28:26900783-26900676 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 498-640 |
| Cow position: | chr28:27987925-27988062 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 499-644 |
| Cow position: | chr28:8616883-8617032 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 511-637 |
| Cow position: | chr28:22498437-22498562 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 48, 109 |
| Conread position: | 515-631 |
| Cow position: | chr28:4163085-4162971 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 528-643 |
| Cow position: | chr28:2814334-2814217 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.