Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aey-a-01-1-UM.s1.3 |
| Conread position: | 435-635 |
| Cow position: | chr29:9661994-9662197 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 449-618 |
| Cow position: | chr29:7637564-7637396 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 110, 144 |
| Conread position: | 452-632 |
| Cow position: | chr29:5976786-5976612 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 107, 37 |
| Conread position: | 453-632 |
| Cow position: | chr29:11005733-11005909 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 63, 111 |
| Conread position: | 453-647 |
| Cow position: | chr29:7407901-7407710 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 180, 32 |
| Conread position: | 455-573 |
| Cow position: | chr29:650281-650394 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 104, 12 |
| Conread position: | 455-605 |
| Cow position: | chr29:25426654-25426507 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 103, 16 |
| Conread position: | 455-613 |
| Cow position: | chr29:16055127-16054976 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 455-620 |
| Cow position: | chr29:6772134-6772296 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 455-623 |
| Cow position: | chr29:26985227-26985397 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 455-624 |
| Cow position: | chr29:4367726-4367894 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 64, 122 |
| Conread position: | 455-626 |
| Cow position: | chr29:22895727-22895900 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 455-626 |
| Cow position: | chr29:39023339-39023165 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 455-629 |
| Cow position: | chr29:10153795-10153617 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 455-632 |
| Cow position: | chr29:942631-942799 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 455-632 |
| Cow position: | chr29:18695253-18695422 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 455-632 |
| Cow position: | chr29:18963735-18963913 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 455-633 |
| Cow position: | chr29:37960974-37960798 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 104, 59 |
| Conread position: | 455-635 |
| Cow position: | chr29:18072944-18073119 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 455-635 |
| Cow position: | chr29:26317852-26318035 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 77 |
| Conread position: | 455-635 |
| Cow position: | chr29:29559719-29559539 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 76 |
| Conread position: | 455-636 |
| Cow position: | chr29:7054420-7054593 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 455-637 |
| Cow position: | chr29:1340785-1340966 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 104, 17 |
| Conread position: | 455-637 |
| Cow position: | chr29:5616868-5616684 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 455-639 |
| Cow position: | chr29:11766722-11766902 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 25 |
| Conread position: | 455-644 |
| Cow position: | chr29:13634298-13634110 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 26, 105 |
| Conread position: | 455-645 |
| Cow position: | chr29:7663268-7663082 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 104, 64 |
| Conread position: | 455-645 |
| Cow position: | chr29:11366239-11366424 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 455-645 |
| Cow position: | chr29:21265761-21265952 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 455-646 |
| Cow position: | chr29:29302658-29302471 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 97, 140 |
| Conread position: | 455-646 |
| Cow position: | chr29:44550496-44550700 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 455-648 |
| Cow position: | chr29:13127122-13126928 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 148 |
| Conread position: | 456-571 |
| Cow position: | chr29:36435432-36435548 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 61, 6 |
| Conread position: | 456-607 |
| Cow position: | chr29:14758857-14758709 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 456-632 |
| Cow position: | chr29:709132-708952 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 456-632 |
| Cow position: | chr29:16309744-16309920 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 456-632 |
| Cow position: | chr29:40337536-40337363 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 456-636 |
| Cow position: | chr29:30350930-30350748 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 456-640 |
| Cow position: | chr29:356322-356512 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 86 |
| Conread position: | 456-647 |
| Cow position: | chr29:27688737-27688549 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 64, 138 |
| Conread position: | 456-648 |
| Cow position: | chr29:11787801-11787979 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 456-648 |
| Cow position: | chr29:19607523-19607333 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 102, 177 |
| Conread position: | 457-627 |
| Cow position: | chr29:12761958-12762129 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 78 |
| Conread position: | 458-629 |
| Cow position: | chr29:21675399-21675566 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 459-636 |
| Cow position: | chr29:21012338-21012163 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 61, 31 |
| Conread position: | 459-637 |
| Cow position: | chr29:6208069-6208244 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 61, 44 |
| Conread position: | 459-644 |
| Cow position: | chr29:4444722-4444910 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 60, 140 |
| Conread position: | 460-632 |
| Cow position: | chr29:21186867-21186695 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 60, 96 |
| Conread position: | 460-638 |
| Cow position: | chr29:4691382-4691204 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 460-639 |
| Cow position: | chr29:18021678-18021494 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 461-637 |
| Cow position: | chr29:10318604-10318789 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 461-641 |
| Cow position: | chr29:44135330-44135150 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 74 |
| Conread position: | 462-628 |
| Cow position: | chr29:23742254-23742091 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 96, 71 |
| Conread position: | 463-632 |
| Cow position: | chr29:21174696-21174528 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 56, 93 |
| Conread position: | 469-637 |
| Cow position: | chr29:22721391-22721556 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 469-647 |
| Cow position: | chr29:35442448-35442268 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 472-637 |
| Cow position: | chr29:2274822-2274661 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 87, 126 |
| Conread position: | 473-631 |
| Cow position: | chr29:15042468-15042622 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 125 |
| Conread position: | 473-647 |
| Cow position: | chr29:12625958-12625785 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 474-628 |
| Cow position: | chr29:942839-942998 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 474-645 |
| Cow position: | chr29:8862461-8862288 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 476-632 |
| Cow position: | chr29:3050192-3050348 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 476-644 |
| Cow position: | chr29:30544403-30544235 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 478-638 |
| Cow position: | chr29:19513-19676 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 480-618 |
| Cow position: | chr29:26298995-26299134 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 481-645 |
| Cow position: | chr29:11071658-11071494 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 77, 117 |
| Conread position: | 481-648 |
| Cow position: | chr29:27613769-27613607 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 483-632 |
| Cow position: | chr29:8794379-8794532 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 483-637 |
| Cow position: | chr29:19734690-19734845 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 484-647 |
| Cow position: | chr29:32080576-32080741 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 490-636 |
| Cow position: | chr29:42686683-42686534 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 495-648 |
| Cow position: | chr29:6150076-6149921 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 496-648 |
| Cow position: | chr29:21534404-21534254 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 496-648 |
| Cow position: | chr29:36196272-36196417 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 508-644 |
| Cow position: | chr29:18541100-18541241 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 544-643 |
| Cow position: | chr29:19189472-19189572 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.