Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aez-g-05-1-UM.s1.3 |
| Conread position: | 1-223 |
| Cow position: | chr13:39984634-39984856 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 163, 148 |
| Conread position: | 1-356 |
| Cow position: | chr13:56317487-56317839 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 1-359 |
| Cow position: | chr13:56333694-56334052 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 150, 169 |
| Conread position: | 1-362 |
| Cow position: | chr13:56292136-56291772 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 1-368 |
| Cow position: | chr13:56333526-56333893 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 319, 337 |
| Conread position: | 1-380 |
| Cow position: | chr13:22125243-22125622 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-380 |
| Cow position: | chr13:24162969-24163348 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-394 |
| Cow position: | chr13:56292798-56292411 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 1-403 |
| Cow position: | chr13:39930794-39931195 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 388, 359 |
| Conread position: | 1-406 |
| Cow position: | chr13:39930710-39931116 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 388, 0 |
| Conread position: | 1-461 |
| Cow position: | chr13:56333610-56334069 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 1-467 |
| Cow position: | chr13:39983962-39984429 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 1-467 |
| Cow position: | chr13:56292293-56291836 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 94 |
| Conread position: | 2-406 |
| Cow position: | chr13:39930627-39931032 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 219, 234 |
| Conread position: | 4-467 |
| Cow position: | chr13:56292547-56292089 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 216, 30 |
| Conread position: | 5-350 |
| Cow position: | chr13:39984554-39984899 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 5-374 |
| Cow position: | chr13:39984302-39984671 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 232, 220 |
| Conread position: | 5-374 |
| Cow position: | chr13:39984386-39984755 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 230, 225 |
| Conread position: | 5-374 |
| Cow position: | chr13:39984470-39984839 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 165, 160 |
| Conread position: | 7-350 |
| Cow position: | chr13:56333952-56334304 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 93, 152 |
| Conread position: | 7-374 |
| Cow position: | chr13:39984136-39984503 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 70, 60 |
| Conread position: | 13-370 |
| Cow position: | chr13:39984058-39984415 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 148, 138 |
| Conread position: | 13-374 |
| Cow position: | chr13:39984226-39984587 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-450 |
| Cow position: | chr13:56292193-56291768 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 35 |
| Conread position: | 33-363 |
| Cow position: | chr13:56292850-56292524 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 94, 80 |
| Conread position: | 109-370 |
| Cow position: | chr13:39983902-39984163 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 152, 156 |
| Conread position: | 127-406 |
| Cow position: | chr13:39930584-39930864 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 262, 0 |
Show alignments to all cow chromosomes.