Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aez-g-05-1-UM.s1.3 |
| Conread position: | 1-346 |
| Cow position: | chr17:22451980-22451635 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 309, 315 |
| Conread position: | 1-359 |
| Cow position: | chr17:22452064-22451706 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 1-361 |
| Cow position: | chr17:22589533-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 1-363 |
| Cow position: | chr17:22473567-22473930 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 0 |
| Conread position: | 1-371 |
| Cow position: | chr17:22498910-22498540 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 147, 155 |
| Conread position: | 1-374 |
| Cow position: | chr17:22498826-22498462 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 1-374 |
| Cow position: | chr17:22552115-22551742 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-380 |
| Cow position: | chr17:22589953-22589574 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 312 |
| Conread position: | 1-387 |
| Cow position: | chr17:22551863-22551477 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 1-390 |
| Cow position: | chr17:22552199-22551811 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 0 |
| Conread position: | 1-434 |
| Cow position: | chr17:22551947-22551513 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 409 |
| Conread position: | 1-434 |
| Cow position: | chr17:22590121-22589687 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 1-445 |
| Cow position: | chr17:22452316-22451870 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 222 |
| Conread position: | 1-445 |
| Cow position: | chr17:22552283-22551839 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 410 |
| Conread position: | 1-445 |
| Cow position: | chr17:22552451-22552007 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 168 |
| Conread position: | 1-445 |
| Cow position: | chr17:22552619-22552175 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 415 |
| Conread position: | 1-445 |
| Cow position: | chr17:22589701-22589255 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 312 |
| Conread position: | 1-448 |
| Cow position: | chr17:22552031-22551582 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 383 |
| Conread position: | 1-448 |
| Cow position: | chr17:22590037-22589588 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 1-455 |
| Cow position: | chr17:22552871-22552416 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 169 |
| Conread position: | 1-467 |
| Cow position: | chr17:22552535-22552068 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 409 |
| Conread position: | 1-467 |
| Cow position: | chr17:22589869-22589402 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 1-467 |
| Cow position: | chr17:22590289-22589822 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 439 |
| Conread position: | 1-474 |
| Cow position: | chr17:22499330-22498858 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 312 |
| Conread position: | 1-480 |
| Cow position: | chr17:22473315-22473795 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 1-498 |
| Cow position: | chr17:22452232-22451733 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 438 |
| Conread position: | 1-528 |
| Cow position: | chr17:22499162-22498629 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 1-564 |
| Cow position: | chr17:22452400-22451830 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 408 |
| Conread position: | 1-585 |
| Cow position: | chr17:22552703-22552111 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 379 |
| Conread position: | 1-609 |
| Cow position: | chr17:22552367-22551751 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 409 |
| Conread position: | 1-617 |
| Cow position: | chr17:22553039-22552415 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 409 |
| Conread position: | 4-448 |
| Cow position: | chr17:22553120-22552674 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 6-433 |
| Cow position: | chr17:22473488-22473916 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 141 |
| Conread position: | 9-374 |
| Cow position: | chr17:22473242-22473604 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 21 |
| Conread position: | 13-445 |
| Cow position: | chr17:22589773-22589341 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 424 |
| Conread position: | 22-382 |
| Cow position: | chr17:22499393-22499033 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 217 |
| Conread position: | 22-497 |
| Cow position: | chr17:22473174-22473645 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 383, 28 |
| Conread position: | 34-467 |
| Cow position: | chr17:22553174-22552740 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 77-434 |
| Cow position: | chr17:22590297-22589939 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 315, 333 |
| Conread position: | 105-445 |
| Cow position: | chr17:22499394-22499052 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 156, 160 |
| Conread position: | 159-467 |
| Cow position: | chr17:22452410-22452101 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 234, 251 |
Show alignments to all cow chromosomes.