Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aez-g-05-1-UM.s1.3 |
| Conread position: | 1-223 |
| Cow position: | chr19:14948317-14948095 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 1-280 |
| Cow position: | chr19:14959098-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 165, 169 |
| Conread position: | 1-344 |
| Cow position: | chr19:14940726-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-354 |
| Cow position: | chr19:43569990-43569641 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 263, 0 |
| Conread position: | 1-357 |
| Cow position: | chr19:14959176-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-359 |
| Cow position: | chr19:23597347-23597705 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 322, 312 |
| Conread position: | 1-360 |
| Cow position: | chr19:14948401-14948042 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 153, 169 |
| Conread position: | 1-363 |
| Cow position: | chr19:14959669-14959309 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 1-363 |
| Cow position: | chr19:14960241-14959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-363 |
| Cow position: | chr19:23597263-23597625 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-363 |
| Cow position: | chr19:43570074-43569714 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 1-366 |
| Cow position: | chr19:23650124-23650489 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-371 |
| Cow position: | chr19:43570158-43569788 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 155, 150 |
| Conread position: | 1-374 |
| Cow position: | chr19:20678017-20678390 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 313 |
| Conread position: | 1-374 |
| Cow position: | chr19:23614422-23614795 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-376 |
| Cow position: | chr19:20678437-20678809 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 256, 0 |
| Conread position: | 1-382 |
| Cow position: | chr19:20677765-20678146 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 258, 240 |
| Conread position: | 1-443 |
| Cow position: | chr19:14940306-14940748 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 383 |
| Conread position: | 1-443 |
| Cow position: | chr19:23649452-23649894 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 159, 150 |
| Conread position: | 1-443 |
| Cow position: | chr19:23649788-23650230 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 1-444 |
| Cow position: | chr19:14940222-14940667 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 410 |
| Conread position: | 1-445 |
| Cow position: | chr19:23614674-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 1-445 |
| Cow position: | chr19:23649620-23650066 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 176 |
| Conread position: | 1-445 |
| Cow position: | chr19:23649704-23650148 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 73 |
| Conread position: | 1-446 |
| Cow position: | chr19:23649872-23650317 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 390, 436 |
| Conread position: | 1-448 |
| Cow position: | chr19:43570242-43569793 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 383 |
| Conread position: | 1-450 |
| Cow position: | chr19:23649536-23649985 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 292 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 1-452 |
| Cow position: | chr19:23649956-23650408 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 288 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 159, 150 |
| Conread position: | 1-466 |
| Cow position: | chr19:23613666-23614132 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 383 |
| Conread position: | 1-467 |
| Cow position: | chr19:14959991-14959540 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 294 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 130, 116 |
| Conread position: | 1-467 |
| Cow position: | chr19:23613582-23614049 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 444 |
| Conread position: | 1-467 |
| Cow position: | chr19:23613918-23614385 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 1-467 |
| Cow position: | chr19:23614170-23614637 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 1-478 |
| Cow position: | chr19:14940138-14940616 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 220 |
| Conread position: | 1-478 |
| Cow position: | chr19:14940390-14940869 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 1-480 |
| Cow position: | chr19:14960409-14959931 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 1-480 |
| Cow position: | chr19:23613414-23613894 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 448 |
| Conread position: | 1-480 |
| Cow position: | chr19:23613834-23614314 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 383 |
| Conread position: | 1-480 |
| Cow position: | chr19:23614338-23614818 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 436 |
| Conread position: | 1-480 |
| Cow position: | chr19:23614506-23614986 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 1-510 |
| Cow position: | chr19:14940474-14940985 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 1-510 |
| Cow position: | chr19:23649368-23649879 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 174, 181 |
| Conread position: | 1-549 |
| Cow position: | chr19:23597095-23597650 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 1-569 |
| Cow position: | chr19:23614086-23614658 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 223 |
| Conread position: | 1-609 |
| Cow position: | chr19:23596930-23597543 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 380 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 260, 105 |
| Conread position: | 4-377 |
| Cow position: | chr19:14959257-14958890 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 235, 139 |
| Conread position: | 4-443 |
| Cow position: | chr19:23596849-23597285 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 278 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 49, 67 |
| Conread position: | 4-467 |
| Cow position: | chr19:43570313-43569859 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 35 |
| Conread position: | 5-363 |
| Cow position: | chr19:14948480-14948123 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 47, 63 |
| Conread position: | 6-359 |
| Cow position: | chr19:14960154-14959801 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 233, 214 |
| Conread position: | 6-374 |
| Cow position: | chr19:20635646-20635278 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 6-374 |
| Cow position: | chr19:20677518-20677886 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 80, 59 |
| Conread position: | 6-383 |
| Cow position: | chr19:20635394-20635017 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 6-433 |
| Cow position: | chr19:14915869-14916289 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 277 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 30, 46 |
| Conread position: | 6-445 |
| Cow position: | chr19:14940059-14940498 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 431 |
| Conread position: | 6-609 |
| Cow position: | chr19:14959582-14958986 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 379 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 248, 237 |
| Conread position: | 7-362 |
| Cow position: | chr19:20678359-20678714 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 166 |
| Conread position: | 7-374 |
| Cow position: | chr19:20635477-20635110 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 232, 217 |
| Conread position: | 7-382 |
| Cow position: | chr19:20635561-20635186 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 157 |
| Conread position: | 7-382 |
| Cow position: | chr19:20677855-20678230 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 139, 148 |
| Conread position: | 7-382 |
| Cow position: | chr19:20677939-20678314 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 64 |
| Conread position: | 7-382 |
| Cow position: | chr19:20678275-20678650 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 45, 64 |
| Conread position: | 7-387 |
| Cow position: | chr19:23614008-23614388 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 7-441 |
| Cow position: | chr19:14940648-14941084 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 73 |
| Conread position: | 7-613 |
| Cow position: | chr19:43570394-43569790 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 386 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 387, 116 |
| Conread position: | 12-382 |
| Cow position: | chr19:14959742-14959374 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 32, 5 |
| Conread position: | 13-617 |
| Cow position: | chr19:23613510-23614122 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 373 |
| Conread position: | 17-447 |
| Cow position: | chr19:14960477-14960048 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 324 |
| Conread position: | 20-467 |
| Cow position: | chr19:23613349-23613797 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 197 |
| Conread position: | 21-480 |
| Cow position: | chr19:20678121-20678581 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 44 |
| Conread position: | 21-552 |
| Cow position: | chr19:14939990-14940528 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 389 |
| Conread position: | 23-390 |
| Cow position: | chr19:14915965-14916329 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 125 |
| Conread position: | 25-374 |
| Cow position: | chr19:20677453-20677802 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 295, 288 |
| Conread position: | 35-382 |
| Cow position: | chr19:20677631-20677978 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 85-443 |
| Cow position: | chr19:14948484-14948127 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 307, 84 |
| Conread position: | 88-447 |
| Cow position: | chr19:14959257-14958902 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 303, 139 |
| Conread position: | 90-380 |
| Cow position: | chr19:20635646-20635356 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 100-382 |
| Cow position: | chr19:20635720-20635438 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 68, 64 |
| Conread position: | 103-467 |
| Cow position: | chr19:14939988-14940353 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 289, 346 |
Show alignments to all cow chromosomes.