Cow genome map

Conread name: Ss1.1-mA2-MI-P-A2-aez-g-05-1-UM.s1.3

Conread position: 1-277
Cow position: chr22:12418711-12418435 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 173
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 83, 57

Conread position: 1-279
Cow position: chr22:11701417-11701695 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 192
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 48, 67

Conread position: 1-282
Cow position: chr22:11641174-11641455 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 70, 64

Conread position: 1-282
Cow position: chr22:11666679-11666960 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 186
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 154, 158

Conread position: 1-283
Cow position: chr22:12499690-12499972 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 191
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 247, 240

Conread position: 1-312
Cow position: chr22:11701333-11701644 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 206
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 84, 75

Conread position: 1-312
Cow position: chr22:14468207-14468518 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 197
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 78, 64

Conread position: 1-329
Cow position: chr22:12430920-12430592 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-351
Cow position: chr22:12418795-12418445 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 219
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 313, 318

Conread position: 1-360
Cow position: chr22:12385266-12384907 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 237
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 1-362
Cow position: chr22:12418963-12418602 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 225
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-362
Cow position: chr22:12475653-12475292 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-362
Cow position: chr22:12499606-12499967 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-363
Cow position: chr22:12399108-12398746 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-368
Cow position: chr22:12498934-12499301 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 246
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 138, 146

Conread position: 1-369
Cow position: chr22:14430634-14430995 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 239
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 50, 56

Conread position: 1-374
Cow position: chr22:11666511-11666884 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 249
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 78, 63

Conread position: 1-374
Cow position: chr22:12418879-12418506 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 242
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 261, 265

Conread position: 1-374
Cow position: chr22:12431844-12431471 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 243

Conread position: 1-374
Cow position: chr22:14430466-14430839 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 231
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 145, 157

Conread position: 1-378
Cow position: chr22:14430046-14430423 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 236
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 252, 216

Conread position: 1-380
Cow position: chr22:12431592-12431213 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 253
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 51, 67

Conread position: 1-382
Cow position: chr22:12431676-12431295 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 253
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 51, 63

Conread position: 1-382
Cow position: chr22:12432264-12431883 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 177

Conread position: 1-382
Cow position: chr22:12476241-12475860 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 248
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 1-382
Cow position: chr22:12499018-12499399 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 247
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 1-382
Cow position: chr22:14468039-14468420 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 81, 73

Conread position: 1-390
Cow position: chr22:12399276-12398887 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-433
Cow position: chr22:12399192-12398759 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 410

Conread position: 1-434
Cow position: chr22:12431088-12430654 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 147

Conread position: 1-442
Cow position: chr22:12431004-12430561 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 287
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 76, 56

Conread position: 1-444
Cow position: chr22:12499354-12499799 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 412

Conread position: 1-445
Cow position: chr22:12399696-12399252 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 436

Conread position: 1-445
Cow position: chr22:12458460-12458014 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 319

Conread position: 1-445
Cow position: chr22:12475905-12475459 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 0

Conread position: 1-446
Cow position: chr22:12458208-12457761 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 229

Conread position: 1-448
Cow position: chr22:11640922-11641371 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 67

Conread position: 1-452
Cow position: chr22:11701165-11701617 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 289
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 78, 63

Conread position: 1-467
Cow position: chr22:12399360-12398893 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 243

Conread position: 1-467
Cow position: chr22:12399528-12399061 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 412

Conread position: 1-467
Cow position: chr22:12431508-12431041 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 409

Conread position: 1-467
Cow position: chr22:12475821-12475354 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 409

Conread position: 1-467
Cow position: chr22:12476157-12475690 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 320

Conread position: 1-467
Cow position: chr22:12499102-12499569 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 145

Conread position: 1-467
Cow position: chr22:12499438-12499905 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 63

Conread position: 1-478
Cow position: chr22:12432432-12431954 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 63

Conread position: 1-480
Cow position: chr22:12458376-12457896 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 189

Conread position: 1-488
Cow position: chr22:12385436-12384946 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 267

Conread position: 1-510
Cow position: chr22:12385604-12385091 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 155

Conread position: 1-510
Cow position: chr22:12432096-12431585 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 56

Conread position: 1-538
Cow position: chr22:12399612-12399068 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 399, 439

Conread position: 1-547
Cow position: chr22:12431340-12430787 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 238

Conread position: 1-564
Cow position: chr22:11640754-11641325 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 72

Conread position: 1-610
Cow position: chr22:12476325-12475708 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 383
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 138, 146

Conread position: 1-617
Cow position: chr22:12399858-12399240 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 19

Conread position: 5-363
Cow position: chr22:46654501-46654860 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 229
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 47, 59

Conread position: 5-364
Cow position: chr22:46654333-46654692 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 232
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 67, 61

Conread position: 5-374
Cow position: chr22:11641010-11641379 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 242
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 153, 162

Conread position: 5-380
Cow position: chr22:12499526-12499901 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 212

Conread position: 5-445
Cow position: chr22:12458624-12458183 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 62

Conread position: 5-480
Cow position: chr22:12431756-12431280 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 18

Conread position: 6-312
Cow position: chr22:14429715-14430021 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 205
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 57, 62

Conread position: 6-374
Cow position: chr22:14429883-14430251 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 238
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 45, 51

Conread position: 8-356
Cow position: chr22:14442197-14442548 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 221
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 18, 87

Conread position: 8-617
Cow position: chr22:12458537-12457920 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 305

Conread position: 13-374
Cow position: chr22:14430226-14430587 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 225
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 73, 50

Conread position: 13-374
Cow position: chr22:46654425-46654786 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 218
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 51

Conread position: 13-445
Cow position: chr22:46654257-46654691 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 273
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 64

Conread position: 13-511
Cow position: chr22:46654089-46654591 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 314
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 64

Conread position: 13-564
Cow position: chr22:12432168-12431609 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 45

Conread position: 13-622
Cow position: chr22:12475977-12475360 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 307

Conread position: 15-467
Cow position: chr22:12399928-12399481 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 88

Conread position: 21-446
Cow position: chr22:12385669-12385241 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 419

Conread position: 21-481
Cow position: chr22:12431908-12431447 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 36

Conread position: 25-374
Cow position: chr22:46654017-46654366 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 224
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 33

Conread position: 25-391
Cow position: chr22:14467979-14468345 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 234
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 303, 279

Conread position: 25-510
Cow position: chr22:12499294-12499781 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 311
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 302, 295

Conread position: 27-351
Cow position: chr22:11666621-11666945 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 211
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 207, 216

Conread position: 27-374
Cow position: chr22:11701275-11701622 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 227
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 155, 151

Conread position: 30-394
Cow position: chr22:11701110-11701474 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 239
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 26, 38

Conread position: 30-452
Cow position: chr22:11666456-11666879 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 273
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 26, 38

Conread position: 31-380
Cow position: chr22:12498880-12499229 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 235
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 21, 36

Conread position: 31-382
Cow position: chr22:11640616-11640967 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 225
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 144, 151

Conread position: 31-389
Cow position: chr22:12476379-12476021 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-467
Cow position: chr22:12458640-12458245 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 252
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 83, 78

Conread position: 85-374
Cow position: chr22:14467955-14468244 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 187
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 167, 159

Conread position: 85-382
Cow position: chr22:12385688-12385389 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 154, 135

Conread position: 85-445
Cow position: chr22:12498850-12499212 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 232
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 227, 232

Conread position: 85-467
Cow position: chr22:12476409-12476026 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 239
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 227, 232

Conread position: 91-610
Cow position: chr22:12476486-12475960 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 333
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 295, 8

Conread position: 97-363
Cow position: chr22:46654005-46654271 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 177
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 52

Conread position: 102-374
Cow position: chr22:12432499-12432227 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 176
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 152, 146

Conread position: 108-434
Cow position: chr22:12419024-12418697 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 215
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 286, 276

Conread position: 116-610
Cow position: chr22:12498797-12499299 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 320
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 32, 24

Conread position: 132-374
Cow position: chr22:46653956-46654198 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 161
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 49

Show alignments to all cow chromosomes.