Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aez-g-05-1-UM.s1.3 |
| Conread position: | 1-198 |
| Cow position: | chr23:24560322-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-227 |
| Cow position: | chr23:25660467-25660693 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-254 |
| Cow position: | chr23:24522420-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 1-317 |
| Cow position: | chr23:24522504-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 238, 229 |
| Conread position: | 1-324 |
| Cow position: | chr23:25626763-25627087 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 1-346 |
| Cow position: | chr23:24639784-24640128 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 259, 265 |
| Conread position: | 1-351 |
| Cow position: | chr23:25724063-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 1-356 |
| Cow position: | chr23:24535813-24535458 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 240 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 237, 245 |
| Conread position: | 1-359 |
| Cow position: | chr23:24654097-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 237, 220 |
| Conread position: | 1-362 |
| Cow position: | chr23:24626372-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 223 |
| Conread position: | 1-362 |
| Cow position: | chr23:24639700-24640061 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 1-363 |
| Cow position: | chr23:24535981-24535619 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 265 |
| Conread position: | 1-364 |
| Cow position: | chr23:24560490-24560127 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-374 |
| Cow position: | chr23:25660215-25660588 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 148 |
| Conread position: | 1-374 |
| Cow position: | chr23:25660299-25660672 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 91, 65 |
| Conread position: | 1-375 |
| Cow position: | chr23:24547014-24546640 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-379 |
| Cow position: | chr23:25698424-25698046 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 101, 116 |
| Conread position: | 1-380 |
| Cow position: | chr23:25626094-25626473 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-452 |
| Cow position: | chr23:25626010-25626462 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 0 |
| Conread position: | 1-467 |
| Cow position: | chr23:25626178-25626642 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 356 |
| Conread position: | 1-480 |
| Cow position: | chr23:24639364-24639844 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 67 |
| Conread position: | 1-503 |
| Cow position: | chr23:24639532-24640036 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 408 |
| Conread position: | 1-510 |
| Cow position: | chr23:24560658-24560147 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 448 |
| Conread position: | 1-510 |
| Cow position: | chr23:24560826-24560315 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 409 |
| Conread position: | 1-556 |
| Cow position: | chr23:24547266-24546704 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 229 |
| Conread position: | 1-617 |
| Cow position: | chr23:24560910-24560286 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 175 |
| Conread position: | 4-380 |
| Cow position: | chr23:24639199-24639575 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 12, 8 |
| Conread position: | 7-428 |
| Cow position: | chr23:25698502-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 7-495 |
| Cow position: | chr23:24639286-24639776 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 141 |
| Conread position: | 11-382 |
| Cow position: | chr23:24522576-24522207 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 11-610 |
| Cow position: | chr23:24560730-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 5 |
| Conread position: | 12-310 |
| Cow position: | chr23:24521986-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 220, 5 |
| Conread position: | 13-353 |
| Cow position: | chr23:25660395-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-362 |
| Cow position: | chr23:24535885-24535536 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-445 |
| Cow position: | chr23:24536050-24535621 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 277 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 245, 250 |
| Conread position: | 17-447 |
| Cow position: | chr23:24547334-24546903 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 213 |
| Conread position: | 20-434 |
| Cow position: | chr23:25626533-25626945 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 49 |
| Conread position: | 21-352 |
| Cow position: | chr23:25698656-25698325 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 21-478 |
| Cow position: | chr23:24522733-24522278 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 161, 121 |
| Conread position: | 22-510 |
| Cow position: | chr23:24522814-24522329 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 27 |
| Conread position: | 24-458 |
| Cow position: | chr23:24626312-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 8 |
| Conread position: | 30-443 |
| Cow position: | chr23:24654042-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 380 |
| Conread position: | 33-408 |
| Cow position: | chr23:25625958-25626334 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 359, 0 |
| Conread position: | 34-408 |
| Cow position: | chr23:25660164-25660539 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 148 |
| Conread position: | 41-433 |
| Cow position: | chr23:25724107-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 349 |
| Conread position: | 61-358 |
| Cow position: | chr23:25698702-25698401 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 8, 93 |
| Conread position: | 84-352 |
| Cow position: | chr23:24521998-24521730 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 228, 17 |
| Conread position: | 86-380 |
| Cow position: | chr23:24639197-24639491 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 92-467 |
| Cow position: | chr23:25660138-25660514 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 140, 126 |
| Conread position: | 94-443 |
| Cow position: | chr23:24536056-24535707 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 300, 316 |
| Conread position: | 99-382 |
| Cow position: | chr23:24626302-24626585 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 188-369 |
| Cow position: | chr23:25698657-25698476 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.