Cow genome map

Conread name: Ss1.1-mA2-MI-P-A2-aez-g-05-1-UM.s1.3

Conread position: 1-221
Cow position: chr25:33305655-33305434 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 167, 0

Conread position: 1-221
Cow position: chr25:36801774-36801990 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 48, 58

Conread position: 1-266
Cow position: chr25:366788-367053 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 180
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 123, 129

Conread position: 1-276
Cow position: chr25:33127949-33128224 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 183
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-278
Cow position: chr25:326986-327263 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 192
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 82, 72

Conread position: 1-312
Cow position: chr25:22235892-22236203 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 195
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 233, 220

Conread position: 1-324
Cow position: chr25:18642192-18641866 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 214
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 123, 244

Conread position: 1-343
Cow position: chr25:34433083-34433443 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 236
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 140, 290

Conread position: 1-349
Cow position: chr25:346511-346858 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 238
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 70, 63

Conread position: 1-352
Cow position: chr25:36801606-36801957 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-353
Cow position: chr25:34433587-34433935 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 221
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 232, 21

Conread position: 1-355
Cow position: chr25:34714181-34714535 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 215
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 153, 157

Conread position: 1-356
Cow position: chr25:33305421-33305073 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 1-359
Cow position: chr25:33127865-33128223 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-359
Cow position: chr25:33145077-33145435 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 235
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 69, 76

Conread position: 1-362
Cow position: chr25:22235976-22236337 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 219
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 218, 235

Conread position: 1-362
Cow position: chr25:33305339-33304982 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 21

Conread position: 1-364
Cow position: chr25:34732545-34732180 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 231
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 79, 66

Conread position: 1-368
Cow position: chr25:34763309-34763673 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 229
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 261, 147

Conread position: 1-379
Cow position: chr25:33157158-33156781 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 219

Conread position: 1-379
Cow position: chr25:33299466-33299846 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 0

Conread position: 1-382
Cow position: chr25:34447505-34447879 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 248
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 364, 201

Conread position: 1-387
Cow position: chr25:33305819-33305436 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 92

Conread position: 1-387
Cow position: chr25:33306156-33305769 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 209

Conread position: 1-391
Cow position: chr25:33305256-33304871 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 147

Conread position: 1-391
Cow position: chr25:36800694-36801084 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-406
Cow position: chr25:33298626-33299032 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 0

Conread position: 1-433
Cow position: chr25:23420446-23420879 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 0

Conread position: 1-433
Cow position: chr25:33298542-33298975 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 0

Conread position: 1-433
Cow position: chr25:33299382-33299815 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 168

Conread position: 1-434
Cow position: chr25:326392-326826 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 277
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 50, 58

Conread position: 1-443
Cow position: chr25:34769809-34769367 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 238

Conread position: 1-444
Cow position: chr25:34762976-34763418 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 277
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 41, 57

Conread position: 1-445
Cow position: chr25:34447169-34447613 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 79

Conread position: 1-446
Cow position: chr25:34447085-34447530 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 283
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 70, 63

Conread position: 1-448
Cow position: chr25:33299214-33299663 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 408

Conread position: 1-452
Cow position: chr25:33298962-33299414 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 436

Conread position: 1-458
Cow position: chr25:34447253-34447712 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 0

Conread position: 1-467
Cow position: chr25:33144912-33145376 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 289
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 238, 126

Conread position: 1-467
Cow position: chr25:33157494-33157027 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 265

Conread position: 1-467
Cow position: chr25:33298710-33299177 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 409

Conread position: 1-467
Cow position: chr25:33298794-33299261 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 196

Conread position: 1-467
Cow position: chr25:33298878-33299345 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 399, 385

Conread position: 1-467
Cow position: chr25:33299046-33299513 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 216

Conread position: 1-467
Cow position: chr25:33299298-33299765 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 409

Conread position: 1-467
Cow position: chr25:36800946-36801401 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 444, 383

Conread position: 1-480
Cow position: chr25:34769725-34769245 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 0

Conread position: 1-480
Cow position: chr25:34769977-34769497 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 383

Conread position: 1-488
Cow position: chr25:33157326-33156838 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 64

Conread position: 1-496
Cow position: chr25:36800778-36801274 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 409

Conread position: 1-508
Cow position: chr25:34770061-34769552 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 383

Conread position: 2-467
Cow position: chr25:36800611-36801077 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 434

Conread position: 3-340
Cow position: chr25:33306397-33306069 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 233
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 77, 62

Conread position: 4-467
Cow position: chr25:36801357-36801821 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 296
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 388, 406

Conread position: 5-268
Cow position: chr25:34433003-34433263 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 174
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 46, 54

Conread position: 5-350
Cow position: chr25:366708-367053 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 220
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 203, 210

Conread position: 5-359
Cow position: chr25:346431-346785 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 223
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 203, 210

Conread position: 5-359
Cow position: chr25:34714101-34714455 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 228
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 169, 175

Conread position: 5-466
Cow position: chr25:36800530-36800992 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 62

Conread position: 5-480
Cow position: chr25:34447005-34447481 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 405

Conread position: 7-409
Cow position: chr25:33299136-33299539 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 0

Conread position: 7-617
Cow position: chr25:34770141-34769521 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 432

Conread position: 13-382
Cow position: chr25:33305971-33305610 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 13-433
Cow position: chr25:33127793-33128214 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 365

Conread position: 13-433
Cow position: chr25:36801534-36801955 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 0

Conread position: 16-362
Cow position: chr25:34732614-34732268 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 225
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 144, 135

Conread position: 16-445
Cow position: chr25:23420377-23420808 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 394

Conread position: 16-496
Cow position: chr25:36801453-36801934 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 57

Conread position: 17-480
Cow position: chr25:34714029-34714493 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 288
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 241, 248

Conread position: 19-433
Cow position: chr25:34446935-34447350 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 260
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 375, 365

Conread position: 20-357
Cow position: chr25:34732106-34731768 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 220
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 32, 48

Conread position: 21-389
Cow position: chr25:34433523-34433888 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 244
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 34, 45

Conread position: 22-312
Cow position: chr25:414774-414490 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 185
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 218, 22

Conread position: 22-467
Cow position: chr25:36800463-36800909 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 282
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 31, 52

Conread position: 29-433
Cow position: chr25:33127725-33128130 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 0

Conread position: 37-362
Cow position: chr25:33306447-33306131 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 216
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 223, 110

Conread position: 42-487
Cow position: chr25:23420319-23420765 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 368

Conread position: 61-433
Cow position: chr25:33305441-33305079 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 13

Conread position: 76-362
Cow position: chr25:18642201-18641912 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 190
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 132, 0

Conread position: 76-374
Cow position: chr25:33157503-33157205 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 201
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 63, 70

Conread position: 85-373
Cow position: chr25:326986-327274 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 49, 61

Conread position: 85-438
Cow position: chr25:366704-367058 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 224
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 138, 148

Conread position: 85-594
Cow position: chr25:34770145-34769628 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 332
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 37, 22

Conread position: 87-374
Cow position: chr25:36801356-36801643 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 191
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 89-433
Cow position: chr25:346431-346776 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 216
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 203, 209

Conread position: 94-452
Cow position: chr25:33298467-33298826 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 236
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 295, 316

Conread position: 100-363
Cow position: chr25:36844626-36844363 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 168
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 45

Conread position: 101-433
Cow position: chr25:326918-327251 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 220
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 31, 25

Conread position: 103-359
Cow position: chr25:33144846-33145099 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 163
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 192, 0

Conread position: 105-362
Cow position: chr25:22235828-22236085 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 44

Conread position: 190-374
Cow position: chr25:34433020-34433204 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.