Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aez-g-05-1-UM.s1.3 |
| Conread position: | 1-215 |
| Cow position: | chr28:9290481-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-331 |
| Cow position: | chr28:33210291-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 1-354 |
| Cow position: | chr28:9290315-9290666 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 1-357 |
| Cow position: | chr28:34696227-34696581 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 345, 0 |
| Conread position: | 1-359 |
| Cow position: | chr28:34695891-34696249 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 98, 89 |
| Conread position: | 1-362 |
| Cow position: | chr28:9298631-9298989 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-362 |
| Cow position: | chr28:11333906-11333545 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 1-374 |
| Cow position: | chr28:7810570-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 1-387 |
| Cow position: | chr28:7810252-7810620 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 41 |
| Conread position: | 1-400 |
| Cow position: | chr28:34696143-34696543 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 156, 167 |
| Conread position: | 1-408 |
| Cow position: | chr28:34679497-34679097 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 1-411 |
| Cow position: | chr28:9298797-9299201 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-433 |
| Cow position: | chr28:11333990-11333557 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 0 |
| Conread position: | 1-441 |
| Cow position: | chr28:9299284-9299723 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 349, 286 |
| Conread position: | 1-445 |
| Cow position: | chr28:9253082-9253528 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 0 |
| Conread position: | 1-467 |
| Cow position: | chr28:7757647-7758114 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 410 |
| Conread position: | 1-467 |
| Cow position: | chr28:7757731-7758198 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 411 |
| Conread position: | 1-467 |
| Cow position: | chr28:9289819-9290278 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 308 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 237, 64 |
| Conread position: | 1-467 |
| Cow position: | chr28:9290151-9290612 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 53 |
| Conread position: | 1-486 |
| Cow position: | chr28:7757479-7757965 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 409 |
| Conread position: | 1-488 |
| Cow position: | chr28:7757899-7758387 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 409 |
| Conread position: | 1-496 |
| Cow position: | chr28:11333822-11333332 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 354 |
| Conread position: | 1-609 |
| Cow position: | chr28:7810327-7810934 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 210 |
| Conread position: | 1-614 |
| Cow position: | chr28:7758151-7758756 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 157 |
| Conread position: | 1-622 |
| Cow position: | chr28:9253166-9253785 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 488 |
| Conread position: | 1-748 |
| Cow position: | chr28:7758387-7759114 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 629 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 594 |
| Conread position: | 4-293 |
| Cow position: | chr28:7810657-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-318 |
| Cow position: | chr28:9290401-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 4-390 |
| Cow position: | chr28:9289983-9290367 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 140 |
| Conread position: | 4-444 |
| Cow position: | chr28:11334071-11333629 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 271 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 392, 0 |
| Conread position: | 4-467 |
| Cow position: | chr28:7757398-7757862 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 406 |
| Conread position: | 4-467 |
| Cow position: | chr28:9252670-9253129 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 274, 73 |
| Conread position: | 5-356 |
| Cow position: | chr28:34673422-34673773 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 72 |
| Conread position: | 5-363 |
| Cow position: | chr28:11334154-11333796 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 66, 58 |
| Conread position: | 6-391 |
| Cow position: | chr28:34679574-34679188 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 7-339 |
| Cow position: | chr28:7809817-7810143 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 44, 56 |
| Conread position: | 7-382 |
| Cow position: | chr28:9253004-9253379 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-609 |
| Cow position: | chr28:9252921-9253530 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 21 |
| Conread position: | 13-447 |
| Cow position: | chr28:34696071-34696506 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 150, 155 |
| Conread position: | 16-620 |
| Cow position: | chr28:7757164-7757770 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 380 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 67, 60 |
| Conread position: | 19-382 |
| Cow position: | chr28:33210225-33210589 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 201, 217 |
| Conread position: | 22-359 |
| Cow position: | chr28:9299221-9299558 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-610 |
| Cow position: | chr28:7757335-7757929 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 386 |
| Conread position: | 67-380 |
| Cow position: | chr28:34679597-34679283 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 173, 22 |
| Conread position: | 85-374 |
| Cow position: | chr28:7810252-7810532 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 93-510 |
| Cow position: | chr28:9289743-9290158 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 240, 139 |
| Conread position: | 100-445 |
| Cow position: | chr28:9298561-9298904 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 43, 104 |
| Conread position: | 103-443 |
| Cow position: | chr28:9299218-9299558 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 288, 309 |
| Conread position: | 113-480 |
| Cow position: | chr28:34673362-34673730 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 111, 130 |
| Conread position: | 828-1017 |
| Cow position: | chr28:7759151-7759334 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 985-1230 |
| Cow position: | chr28:7759334-7759591 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 95, 0 |
Show alignments to all cow chromosomes.