Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aez-g-05-1-UM.s1.3 |
| Conread position: | 1-241 |
| Cow position: | chr7:1440037-1440277 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-243 |
| Cow position: | chr7:1438480-1438722 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-311 |
| Cow position: | chr7:8277237-8277549 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 63 |
| Conread position: | 1-312 |
| Cow position: | chr7:8277827-8278138 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 50, 69 |
| Conread position: | 1-324 |
| Cow position: | chr7:1015170-1015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 1-324 |
| Cow position: | chr7:1439954-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-356 |
| Cow position: | chr7:11600788-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 1-359 |
| Cow position: | chr7:1015086-1015444 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 1-363 |
| Cow position: | chr7:3180432-3180794 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-363 |
| Cow position: | chr7:8325132-8325494 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 1-374 |
| Cow position: | chr7:8325300-8325673 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 85 |
| Conread position: | 1-374 |
| Cow position: | chr7:8325468-8325841 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 1-374 |
| Cow position: | chr7:8325720-8326093 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 1-381 |
| Cow position: | chr7:42878625-42878246 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 365 |
| Conread position: | 1-382 |
| Cow position: | chr7:1439870-1440250 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-382 |
| Cow position: | chr7:8277659-8278040 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 80, 64 |
| Conread position: | 1-382 |
| Cow position: | chr7:8277911-8278292 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 92, 71 |
| Conread position: | 1-407 |
| Cow position: | chr7:1438312-1438719 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 147 |
| Conread position: | 1-433 |
| Cow position: | chr7:1015002-1015435 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 0 |
| Conread position: | 1-434 |
| Cow position: | chr7:1014168-1014602 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 86, 74 |
| Conread position: | 1-434 |
| Cow position: | chr7:11600872-11600438 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 233, 219 |
| Conread position: | 1-445 |
| Cow position: | chr7:3180180-3180626 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 0 |
| Conread position: | 1-445 |
| Cow position: | chr7:3180348-3180792 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 179 |
| Conread position: | 1-445 |
| Cow position: | chr7:11601124-11600680 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 409 |
| Conread position: | 1-448 |
| Cow position: | chr7:1439533-1439982 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 62 |
| Conread position: | 1-448 |
| Cow position: | chr7:3179760-3180209 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 1-448 |
| Cow position: | chr7:3179844-3180293 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 0 |
| Conread position: | 1-467 |
| Cow position: | chr7:1439787-1440252 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 75 |
| Conread position: | 1-467 |
| Cow position: | chr7:3179928-3180395 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 224 |
| Conread position: | 1-467 |
| Cow position: | chr7:18389973-18390440 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 248, 234 |
| Conread position: | 1-478 |
| Cow position: | chr7:1438228-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 301 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 399, 420 |
| Conread position: | 1-480 |
| Cow position: | chr7:1014420-1014894 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 1-480 |
| Cow position: | chr7:3180012-3180492 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 436 |
| Conread position: | 1-480 |
| Cow position: | chr7:3180264-3180744 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 264 |
| Conread position: | 1-498 |
| Cow position: | chr7:18390225-18390724 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 435 |
| Conread position: | 1-609 |
| Cow position: | chr7:1014750-1015366 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 240 |
| Conread position: | 1-610 |
| Cow position: | chr7:42879129-42878512 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 410 |
| Conread position: | 1-615 |
| Cow position: | chr7:42878877-42878255 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 408 |
| Conread position: | 1-617 |
| Cow position: | chr7:42879213-42878589 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 408 |
| Conread position: | 4-390 |
| Cow position: | chr7:1439452-1439838 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 4-478 |
| Cow position: | chr7:1438149-1438622 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 389, 47 |
| Conread position: | 4-480 |
| Cow position: | chr7:1014669-1015146 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 60 |
| Conread position: | 5-382 |
| Cow position: | chr7:8325556-8325933 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 79, 60 |
| Conread position: | 5-445 |
| Cow position: | chr7:11601036-11600594 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 280 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 155, 143 |
| Conread position: | 5-447 |
| Cow position: | chr7:11601204-11600761 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 47, 58 |
| Conread position: | 6-259 |
| Cow position: | chr7:3180689-3180935 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 149, 107 |
| Conread position: | 6-350 |
| Cow position: | chr7:1014257-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 316, 307 |
| Conread position: | 6-382 |
| Cow position: | chr7:8243119-8243494 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 70 |
| Conread position: | 6-400 |
| Cow position: | chr7:18390314-18390709 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 7-168 |
| Cow position: | chr7:1438570-1438731 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-286 |
| Cow position: | chr7:11434502-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 7-312 |
| Cow position: | chr7:8325810-8326115 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 45, 71 |
| Conread position: | 7-374 |
| Cow position: | chr7:8242868-8243235 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 44, 66 |
| Conread position: | 7-374 |
| Cow position: | chr7:8277413-8277780 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 7-374 |
| Cow position: | chr7:8277749-8278116 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 159, 143 |
| Conread position: | 7-374 |
| Cow position: | chr7:8324970-8325337 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 71, 58 |
| Conread position: | 7-382 |
| Cow position: | chr7:11434663-11434295 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 79, 58 |
| Conread position: | 7-382 |
| Cow position: | chr7:18390147-18390522 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 7-480 |
| Cow position: | chr7:18390063-18390537 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 295 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 69, 62 |
| Conread position: | 7-538 |
| Cow position: | chr7:1014840-1015378 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 433 |
| Conread position: | 8-311 |
| Cow position: | chr7:8324887-8325190 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 74, 56 |
| Conread position: | 9-387 |
| Cow position: | chr7:8277499-8277877 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 155, 145 |
| Conread position: | 10-260 |
| Cow position: | chr7:18390570-18390820 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-363 |
| Cow position: | chr7:3180528-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 269 |
| Conread position: | 13-383 |
| Cow position: | chr7:8278091-8278459 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 39, 73 |
| Conread position: | 14-374 |
| Cow position: | chr7:8324726-8325085 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 18-331 |
| Cow position: | chr7:1438413-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 182, 168 |
| Conread position: | 20-600 |
| Cow position: | chr7:42879448-42878858 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 368 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 6, 52 |
| Conread position: | 21-363 |
| Cow position: | chr7:8243385-8243727 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 21-382 |
| Cow position: | chr7:8243553-8243914 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 31, 49 |
| Conread position: | 21-382 |
| Cow position: | chr7:8324816-8325177 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 65, 44 |
| Conread position: | 21-609 |
| Cow position: | chr7:42879361-42878765 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 415 |
| Conread position: | 22-613 |
| Cow position: | chr7:42879276-42878677 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 362 |
| Conread position: | 27-390 |
| Cow position: | chr7:8242804-8243167 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 38 |
| Conread position: | 80-467 |
| Cow position: | chr7:11601213-11600825 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 75, 68 |
| Conread position: | 85-317 |
| Cow position: | chr7:11434508-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 157, 140 |
| Conread position: | 85-369 |
| Cow position: | chr7:8243701-8243985 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 159, 145 |
| Conread position: | 87-445 |
| Cow position: | chr7:1014668-1015028 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 87-445 |
| Cow position: | chr7:1439451-1439813 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 148 |
| Conread position: | 111-391 |
| Cow position: | chr7:1438088-1438366 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 121-467 |
| Cow position: | chr7:3179712-3180059 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 265, 316 |
Show alignments to all cow chromosomes.