Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aez-g-05-1-UM.s1.3 |
| Conread position: | 1-301 |
| Cow position: | chr8:48406559-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 218, 243 |
| Conread position: | 1-338 |
| Cow position: | chr8:45201669-45202006 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 319 |
| Conread position: | 1-357 |
| Cow position: | chr8:6958017-6957661 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 322, 234 |
| Conread position: | 1-360 |
| Cow position: | chr8:46817032-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 1-362 |
| Cow position: | chr8:48406643-48406280 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 351, 0 |
| Conread position: | 1-363 |
| Cow position: | chr8:48406979-48406617 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 154, 148 |
| Conread position: | 1-364 |
| Cow position: | chr8:55581389-55581752 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 1-374 |
| Cow position: | chr8:46816528-46816901 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 223 |
| Conread position: | 1-374 |
| Cow position: | chr8:55581221-55581594 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-380 |
| Cow position: | chr8:55581305-55581684 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 164, 169 |
| Conread position: | 1-382 |
| Cow position: | chr8:48407483-48407102 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 169 |
| Conread position: | 1-384 |
| Cow position: | chr8:45201585-45201968 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-434 |
| Cow position: | chr8:55581053-55581487 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 409 |
| Conread position: | 1-445 |
| Cow position: | chr8:48406811-48406367 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 1-445 |
| Cow position: | chr8:55580969-55581413 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 436 |
| Conread position: | 1-445 |
| Cow position: | chr8:55581137-55581583 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 0 |
| Conread position: | 1-446 |
| Cow position: | chr8:48407399-48406954 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 312 |
| Conread position: | 1-448 |
| Cow position: | chr8:46816864-46817313 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 220 |
| Conread position: | 1-480 |
| Cow position: | chr8:45201165-45201645 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 444 |
| Conread position: | 1-480 |
| Cow position: | chr8:45201333-45201813 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 439 |
| Conread position: | 1-480 |
| Cow position: | chr8:48407147-48406667 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 66 |
| Conread position: | 1-487 |
| Cow position: | chr8:46816360-46816847 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 409 |
| Conread position: | 1-495 |
| Cow position: | chr8:45200829-45201325 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 439 |
| Conread position: | 1-497 |
| Cow position: | chr8:45201417-45201915 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 1-499 |
| Cow position: | chr8:48407315-48406815 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 229 |
| Conread position: | 1-570 |
| Cow position: | chr8:46816024-46816602 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 220 |
| Conread position: | 1-610 |
| Cow position: | chr8:46816612-46817229 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 216 |
| Conread position: | 1-613 |
| Cow position: | chr8:46816108-46816728 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 2-497 |
| Cow position: | chr8:55580802-55581299 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 3-467 |
| Cow position: | chr8:46815939-46816407 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 358 |
| Conread position: | 4-467 |
| Cow position: | chr8:45201000-45201464 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 380 |
| Conread position: | 5-445 |
| Cow position: | chr8:48407647-48407205 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 57 |
| Conread position: | 5-617 |
| Cow position: | chr8:45201085-45201705 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 52 |
| Conread position: | 5-617 |
| Cow position: | chr8:46816196-46816816 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 138 |
| Conread position: | 13-390 |
| Cow position: | chr8:46816960-46817336 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 13-467 |
| Cow position: | chr8:48407555-48407100 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 231 |
| Conread position: | 22-374 |
| Cow position: | chr8:48406706-48406354 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-617 |
| Cow position: | chr8:45200937-45201537 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 200 |
| Conread position: | 42-486 |
| Cow position: | chr8:45200786-45201231 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 283 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 196, 175 |
| Conread position: | 211-382 |
| Cow position: | chr8:6958059-6957888 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.