Cow genome map
| Conread name: | Ss1.1-mA2-MI-P-A2-aez-g-05-1-UM.s1.3 |
| Conread position: | 1-268 |
| Cow position: | chrX:29045680-29045413 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chrX:12627418-12627727 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 1-363 |
| Cow position: | chrX:25324600-25324238 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-377 |
| Cow position: | chrX:25310205-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-382 |
| Cow position: | chrX:25309701-25310082 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 148 |
| Conread position: | 1-386 |
| Cow position: | chrX:29045029-29044644 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 229 |
| Conread position: | 1-394 |
| Cow position: | chrX:25309869-25310262 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-445 |
| Cow position: | chrX:25324684-25324240 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 436 |
| Conread position: | 1-448 |
| Cow position: | chrX:25309953-25310402 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 0 |
| Conread position: | 1-448 |
| Cow position: | chrX:29045197-29044748 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 229 |
| Conread position: | 1-466 |
| Cow position: | chrX:25325776-25325310 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 144 |
| Conread position: | 1-467 |
| Cow position: | chrX:25309785-25310252 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 448 |
| Conread position: | 1-480 |
| Cow position: | chrX:25310037-25310517 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 223 |
| Conread position: | 1-487 |
| Cow position: | chrX:25325020-25324533 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 409 |
| Conread position: | 1-610 |
| Cow position: | chrX:29045281-29044663 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 439 |
| Conread position: | 1-613 |
| Cow position: | chrX:25324936-25324316 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 66 |
| Conread position: | 1-613 |
| Cow position: | chrX:25325272-25324652 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 216 |
| Conread position: | 1-617 |
| Cow position: | chrX:25325524-25324900 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 409 |
| Conread position: | 5-445 |
| Cow position: | chrX:25310125-25310567 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 219 |
| Conread position: | 7-371 |
| Cow position: | chrX:29045758-29045394 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 65 |
| Conread position: | 14-445 |
| Cow position: | chrX:25325847-25325416 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 219, 198 |
| Conread position: | 16-445 |
| Cow position: | chrX:25325593-25325164 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 368 |
| Conread position: | 21-382 |
| Cow position: | chrX:29045828-29045467 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 37-359 |
| Cow position: | chrX:13826933-13826611 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 108, 112 |
| Conread position: | 61-613 |
| Cow position: | chrX:29045383-29044829 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 348 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 331, 20 |
| Conread position: | 90-600 |
| Cow position: | chrX:25325857-25325337 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 20, 296 |
| Conread position: | 103-478 |
| Cow position: | chrX:29045830-29045454 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 337 |
| Conread position: | 154-613 |
| Cow position: | chrX:25325875-25325408 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 237, 298 |
| Conread position: | 177-482 |
| Cow position: | chrX:29045840-29045534 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 209, 0 |
| Conread position: | 219-478 |
| Cow position: | chrX:25309667-25309927 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 25 |
Show alignments to all cow chromosomes.