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Cow genome map

           
Conread name:
           
Ss1.1-mCP1-MI-P-CP1-nzc-c-06-0-UI.s1.3
        

               
Conread position:
               
237-503
               

               
Cow position:
               
chrX:42479799-42480055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
5, 169
               

               
Conread position:
               
238-514
               

               
Cow position:
               
chrX:31442859-31442600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
248-503
               

               
Cow position:
               
chrX:40680593-40680843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 151
               

               
Conread position:
               
248-505
               

               
Cow position:
               
chrX:34238697-34238956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
24, 162
               

               
Conread position:
               
250-438
               

               
Cow position:
               
chrX:12191744-12191928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
250-499
               

               
Cow position:
               
chrX:4328200-4327958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
231, 20
               

               
Conread position:
               
250-499
               

               
Cow position:
               
chrX:29478706-29478946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
250-500
               

               
Cow position:
               
chrX:35383056-35382817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
250-504
               

               
Cow position:
               
chrX:35275968-35276216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
251, 62
               

               
Conread position:
               
251-505
               

               
Cow position:
               
chrX:10252215-10251972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
65, 77
               

               
Conread position:
               
251-507
               

               
Cow position:
               
chrX:17292936-17293189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
252-508
               

               
Cow position:
               
chrX:42855442-42855696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
252-510
               

               
Cow position:
               
chrX:2935940-2936188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 152
               

               
Conread position:
               
252-510
               

               
Cow position:
               
chrX:38301790-38302050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
24, 151
               

               
Conread position:
               
259-503
               

               
Cow position:
               
chrX:4996576-4996817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
84, 147
               

               
Conread position:
               
262-509
               

               
Cow position:
               
chrX:6544251-6544479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
262-509
               

               
Cow position:
               
chrX:18111371-18111613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 123
               

               
Conread position:
               
262-509
               

               
Cow position:
               
chrX:43008602-43008845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 127
               

               
Conread position:
               
263-399
               

               
Cow position:
               
chrX:42469947-42469810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
263-437
               

               
Cow position:
               
chrX:29553280-29553453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
263-504
               

               
Cow position:
               
chrX:12095779-12095542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
41, 144
               

               
Conread position:
               
263-508
               

               
Cow position:
               
chrX:6407540-6407780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
263-508
               

               
Cow position:
               
chrX:44961746-44961988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
210, 137
               

               
Conread position:
               
263-509
               

               
Cow position:
               
chrX:24170735-24170490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
11, 102
               

               
Conread position:
               
263-509
               

               
Cow position:
               
chrX:44192453-44192207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
7, 141
               

               
Conread position:
               
263-514
               

               
Cow position:
               
chrX:9252167-9251925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
263-523
               

               
Cow position:
               
chrX:27174997-27175248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
264-399
               

               
Cow position:
               
chrX:37574836-37574971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
264-437
               

               
Cow position:
               
chrX:5135527-5135353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
93, 138
               

               
Conread position:
               
264-438
               

               
Cow position:
               
chrX:11085067-11084895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
264-438
               

               
Cow position:
               
chrX:23562628-23562801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
160, 134
               

               
Conread position:
               
264-444
               

               
Cow position:
               
chrX:32978085-32977909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
147, 56
               

               
Conread position:
               
264-456
               

               
Cow position:
               
chrX:4043867-4043675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
160, 33
               

               
Conread position:
               
264-456
               

               
Cow position:
               
chrX:11717787-11717596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
182, 136
               

               
Conread position:
               
264-464
               

               
Cow position:
               
chrX:4515681-4515877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 100
               

               
Conread position:
               
264-468
               

               
Cow position:
               
chrX:18046397-18046597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
182, 56
               

               
Conread position:
               
264-484
               

               
Cow position:
               
chrX:31294577-31294360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
264-487
               

               
Cow position:
               
chrX:12309390-12309173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
264-492
               

               
Cow position:
               
chrX:42836177-42836398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
264-498
               

               
Cow position:
               
chrX:26493000-26493230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 126
               

               
Conread position:
               
264-498
               

               
Cow position:
               
chrX:40269487-40269731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
78, 200
               

               
Conread position:
               
264-499
               

               
Cow position:
               
chrX:8917390-8917619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
264-499
               

               
Cow position:
               
chrX:10516250-10516478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
264-499
               

               
Cow position:
               
chrX:44339325-44339097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
264-499
               

               
Cow position:
               
chrX:46532499-46532266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
264-500
               

               
Cow position:
               
chrX:27075055-27074826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
264-500
               

               
Cow position:
               
chrX:31626978-31626740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 68
               

               
Conread position:
               
264-500
               

               
Cow position:
               
chrX:39220073-39220313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
264-500
               

               
Cow position:
               
chrX:44397011-44397236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
264-503
               

               
Cow position:
               
chrX:9201544-9201771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
200, 139
               

               
Conread position:
               
264-503
               

               
Cow position:
               
chrX:23335976-23335747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
264-503
               

               
Cow position:
               
chrX:37489716-37489957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
264-504
               

               
Cow position:
               
chrX:25207858-25207632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
264-504
               

               
Cow position:
               
chrX:38549440-38549676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 139
               

               
Conread position:
               
264-505
               

               
Cow position:
               
chrX:12249807-12250045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
46, 114
               

               
Conread position:
               
264-505
               

               
Cow position:
               
chrX:29680265-29680016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
264-506
               

               
Cow position:
               
chrX:1466158-1466394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
197, 139
               

               
Conread position:
               
264-506
               

               
Cow position:
               
chrX:4109185-4109416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
264-506
               

               
Cow position:
               
chrX:30337956-30337723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
264-507
               

               
Cow position:
               
chrX:47345323-47345562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
121, 142
               

               
Conread position:
               
264-508
               

               
Cow position:
               
chrX:27145600-27145832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
264-508
               

               
Cow position:
               
chrX:32208826-32208594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
264-508
               

               
Cow position:
               
chrX:40685332-40685096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
264-509
               

               
Cow position:
               
chrX:9360882-9361116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 106
               

               
Conread position:
               
264-509
               

               
Cow position:
               
chrX:13177483-13177250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
14, 142
               

               
Conread position:
               
264-509
               

               
Cow position:
               
chrX:17231731-17231972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
55, 26
               

               
Conread position:
               
264-509
               

               
Cow position:
               
chrX:22392988-22392754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
264-509
               

               
Cow position:
               
chrX:22482701-22482455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
46, 86
               

               
Conread position:
               
264-509
               

               
Cow position:
               
chrX:24331773-24332011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
264-509
               

               
Cow position:
               
chrX:26979793-26979556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
264-509
               

               
Cow position:
               
chrX:37781113-37780878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
264-511
               

               
Cow position:
               
chrX:45976922-45977161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
244, 133
               

               
Conread position:
               
264-512
               

               
Cow position:
               
chrX:25411903-25412156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
146, 110
               

               
Conread position:
               
264-513
               

               
Cow position:
               
chrX:27446682-27446921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
265-396
               

               
Cow position:
               
chrX:19273710-19273579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
265-400
               

               
Cow position:
               
chrX:46429822-46429687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
265-401
               

               
Cow position:
               
chrX:37986228-37986358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
265-402
               

               
Cow position:
               
chrX:4466964-4467101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
265-402
               

               
Cow position:
               
chrX:35224293-35224431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
265-410
               

               
Cow position:
               
chrX:25328618-25328475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
265-414
               

               
Cow position:
               
chrX:33493776-33493921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
265-422
               

               
Cow position:
               
chrX:41884415-41884260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
265-425
               

               
Cow position:
               
chrX:42160624-42160778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
265-441
               

               
Cow position:
               
chrX:878383-878209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
265-443
               

               
Cow position:
               
chrX:27306451-27306628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
265-449
               

               
Cow position:
               
chrX:45670220-45670399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
265-473
               

               
Cow position:
               
chrX:169548-169343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
265-483
               

               
Cow position:
               
chrX:41068721-41068928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
265-493
               

               
Cow position:
               
chrX:34554720-34554942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
265-496
               

               
Cow position:
               
chrX:31436471-31436690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 23
               

               
Conread position:
               
265-497
               

               
Cow position:
               
chrX:25035385-25035159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
265-500
               

               
Cow position:
               
chrX:19286894-19286676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
149, 46
               

               
Conread position:
               
265-503
               

               
Cow position:
               
chrX:21327908-21328142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 138
               

               
Conread position:
               
265-504
               

               
Cow position:
               
chrX:3579941-3580174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
265-504
               

               
Cow position:
               
chrX:4399123-4399347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
265-504
               

               
Cow position:
               
chrX:13121935-13122173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
265-504
               

               
Cow position:
               
chrX:18964826-18964605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
265-505
               

               
Cow position:
               
chrX:151902-152135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
265-505
               

               
Cow position:
               
chrX:27431922-27431694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 147
               

               
Conread position:
               
265-505
               

               
Cow position:
               
chrX:29601831-29601598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
235, 135
               

               
Conread position:
               
265-505
               

               
Cow position:
               
chrX:31250385-31250620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
202, 140
               

               
Conread position:
               
265-505
               

               
Cow position:
               
chrX:31948938-31948704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
265-506
               

               
Cow position:
               
chrX:39290356-39290586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
204, 133
               

               
Conread position:
               
265-507
               

               
Cow position:
               
chrX:4153034-4152812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
265-507
               

               
Cow position:
               
chrX:5919489-5919719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
101, 142
               

               
Conread position:
               
265-507
               

               
Cow position:
               
chrX:9651027-9650794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
231, 138
               

               
Conread position:
               
265-507
               

               
Cow position:
               
chrX:11326101-11325877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
14, 111
               

               
Conread position:
               
265-507
               

               
Cow position:
               
chrX:17956690-17956921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
265-507
               

               
Cow position:
               
chrX:37072385-37072618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
19, 147
               

               
Conread position:
               
265-508
               

               
Cow position:
               
chrX:1088143-1087915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
265-508
               

               
Cow position:
               
chrX:29229996-29230240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 160
               

               
Conread position:
               
265-508
               

               
Cow position:
               
chrX:33855223-33854993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
22, 97
               

               
Conread position:
               
265-508
               

               
Cow position:
               
chrX:34837066-34836839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
265-508
               

               
Cow position:
               
chrX:38853195-38853444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 71
               

               
Conread position:
               
265-508
               

               
Cow position:
               
chrX:41871064-41871290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
265-508
               

               
Cow position:
               
chrX:44759944-44759706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 114
               

               
Conread position:
               
265-509
               

               
Cow position:
               
chrX:6414044-6414266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
265-509
               

               
Cow position:
               
chrX:24749085-24749321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
265-509
               

               
Cow position:
               
chrX:34376935-34377173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 144
               

               
Conread position:
               
265-509
               

               
Cow position:
               
chrX:34502918-34503160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
166, 9
               

               
Conread position:
               
265-509
               

               
Cow position:
               
chrX:38587846-38587611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
265-509
               

               
Cow position:
               
chrX:40557682-40557424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
265-510
               

               
Cow position:
               
chrX:3806679-3806913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
265-510
               

               
Cow position:
               
chrX:5118505-5118263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
45, 142
               

               
Conread position:
               
265-510
               

               
Cow position:
               
chrX:24365824-24365587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
265-510
               

               
Cow position:
               
chrX:30672399-30672149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
60, 25
               

               
Conread position:
               
265-511
               

               
Cow position:
               
chrX:20339894-20339657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
236, 25
               

               
Conread position:
               
265-523
               

               
Cow position:
               
chrX:34314028-34314271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 32
               

               
Conread position:
               
265-523
               

               
Cow position:
               
chrX:34792314-34792074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
240, 88
               

               
Conread position:
               
266-400
               

               
Cow position:
               
chrX:45383048-45382914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 69
               

               
Conread position:
               
266-402
               

               
Cow position:
               
chrX:20584326-20584462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
266-402
               

               
Cow position:
               
chrX:46070174-46070034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
266-419
               

               
Cow position:
               
chrX:23088853-23089001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
12, 47
               

               
Conread position:
               
266-422
               

               
Cow position:
               
chrX:24424402-24424249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
266-428
               

               
Cow position:
               
chrX:17888421-17888265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
266-428
               

               
Cow position:
               
chrX:18273057-18272901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
266-431
               

               
Cow position:
               
chrX:619004-618845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
148, 88
               

               
Conread position:
               
266-432
               

               
Cow position:
               
chrX:17725973-17726138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
266-436
               

               
Cow position:
               
chrX:38006768-38006606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
266-438
               

               
Cow position:
               
chrX:36068012-36068187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
266-445
               

               
Cow position:
               
chrX:31312027-31312204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
266-473
               

               
Cow position:
               
chrX:14275746-14275550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 138
               

               
Conread position:
               
266-489
               

               
Cow position:
               
chrX:4279120-4278905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
195, 116
               

               
Conread position:
               
266-489
               

               
Cow position:
               
chrX:10831492-10831267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 114
               

               
Conread position:
               
266-491
               

               
Cow position:
               
chrX:36848580-36848341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
266-494
               

               
Cow position:
               
chrX:4645915-4645695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 115
               

               
Conread position:
               
266-498
               

               
Cow position:
               
chrX:8869405-8869181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
8, 133
               

               
Conread position:
               
266-498
               

               
Cow position:
               
chrX:31489518-31489744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
266-499
               

               
Cow position:
               
chrX:41526524-41526310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
266-500
               

               
Cow position:
               
chrX:18694929-18694697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
134, 54
               

               
Conread position:
               
266-500
               

               
Cow position:
               
chrX:38642247-38642467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
266-503
               

               
Cow position:
               
chrX:16984639-16984863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
266-503
               

               
Cow position:
               
chrX:23561855-23562101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
266-503
               

               
Cow position:
               
chrX:34532518-34532739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
266-503
               

               
Cow position:
               
chrX:40532045-40531798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
266-504
               

               
Cow position:
               
chrX:27261188-27261419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
8, 139
               

               
Conread position:
               
266-504
               

               
Cow position:
               
chrX:41027157-41027390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
232, 139
               

               
Conread position:
               
266-504
               

               
Cow position:
               
chrX:43150425-43150660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 127
               

               
Conread position:
               
266-505
               

               
Cow position:
               
chrX:4289440-4289664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
266-506
               

               
Cow position:
               
chrX:42247184-42246949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
235, 134
               

               
Conread position:
               
266-507
               

               
Cow position:
               
chrX:616261-616007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
266-507
               

               
Cow position:
               
chrX:22074792-22075027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
9, 143
               

               
Conread position:
               
266-507
               

               
Cow position:
               
chrX:23514017-23513769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
148, 58
               

               
Conread position:
               
266-507
               

               
Cow position:
               
chrX:29542219-29541996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
266-507
               

               
Cow position:
               
chrX:34411844-34412080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 137
               

               
Conread position:
               
266-508
               

               
Cow position:
               
chrX:23498680-23498430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
6, 41
               

               
Conread position:
               
266-509
               

               
Cow position:
               
chrX:7695748-7695997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 70
               

               
Conread position:
               
266-509
               

               
Cow position:
               
chrX:11656079-11656312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
266-509
               

               
Cow position:
               
chrX:34565284-34565519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
266-509
               

               
Cow position:
               
chrX:43115149-43115383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
266-509
               

               
Cow position:
               
chrX:45699974-45699746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
266-510
               

               
Cow position:
               
chrX:4037175-4036917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 103
               

               
Conread position:
               
266-510
               

               
Cow position:
               
chrX:21672552-21672799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 122
               

               
Conread position:
               
266-865
               

               
Cow position:
               
chrX:35542893-35543474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
267-402
               

               
Cow position:
               
chrX:2523683-2523548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
267-402
               

               
Cow position:
               
chrX:37232407-37232541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
267-405
               

               
Cow position:
               
chrX:12082325-12082187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
267-413
               

               
Cow position:
               
chrX:38066456-38066310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
267-417
               

               
Cow position:
               
chrX:45174849-45174999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
267-474
               

               
Cow position:
               
chrX:13647786-13647585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
267-484
               

               
Cow position:
               
chrX:22822045-22822264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
267-486
               

               
Cow position:
               
chrX:36975951-36976163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
267-492
               

               
Cow position:
               
chrX:34420733-34420953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
267-492
               

               
Cow position:
               
chrX:47061395-47061603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
267-495
               

               
Cow position:
               
chrX:47079626-47079847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
267-499
               

               
Cow position:
               
chrX:27509023-27508800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chrX:19469507-19469285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
229, 130
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chrX:45502144-45502364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
44, 137
               

               
Conread position:
               
267-505
               

               
Cow position:
               
chrX:42492524-42492291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
267-506
               

               
Cow position:
               
chrX:38218713-38218944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
107, 141
               

               
Conread position:
               
267-507
               

               
Cow position:
               
chrX:13913069-13913307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 118
               

               
Conread position:
               
267-507
               

               
Cow position:
               
chrX:20957237-20957469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
267-507
               

               
Cow position:
               
chrX:35985819-35986047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
267-507
               

               
Cow position:
               
chrX:42893922-42894154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
8, 141
               

               
Conread position:
               
267-507
               

               
Cow position:
               
chrX:42927826-42927598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
7, 137
               

               
Conread position:
               
267-509
               

               
Cow position:
               
chrX:6599783-6599540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 136
               

               
Conread position:
               
267-509
               

               
Cow position:
               
chrX:7277910-7278140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
267-509
               

               
Cow position:
               
chrX:37856351-37856595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
43, 121
               

               
Conread position:
               
267-509
               

               
Cow position:
               
chrX:46587821-46588055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
234, 133
               

               
Conread position:
               
267-516
               

               
Cow position:
               
chrX:21986291-21986058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 39
               

               
Conread position:
               
267-523
               

               
Cow position:
               
chrX:33654845-33654595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
268-401
               

               
Cow position:
               
chrX:11938935-11938801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
43, 126
               

               
Conread position:
               
268-419
               

               
Cow position:
               
chrX:41192704-41192853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
268-431
               

               
Cow position:
               
chrX:29501881-29501722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
157, 30
               

               
Conread position:
               
268-488
               

               
Cow position:
               
chrX:46291137-46291354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
89, 130
               

               
Conread position:
               
268-492
               

               
Cow position:
               
chrX:34543784-34544003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
268-503
               

               
Cow position:
               
chrX:24633684-24633914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
66, 146
               

               
Conread position:
               
268-503
               

               
Cow position:
               
chrX:34315519-34315755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 138
               

               
Conread position:
               
268-503
               

               
Cow position:
               
chrX:42381112-42380884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
268-505
               

               
Cow position:
               
chrX:19394553-19394785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
268-505
               

               
Cow position:
               
chrX:27668958-27668732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
268-505
               

               
Cow position:
               
chrX:36392190-36391958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
268-505
               

               
Cow position:
               
chrX:40108519-40108283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 133
               

               
Conread position:
               
268-506
               

               
Cow position:
               
chrX:6559448-6559225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
268-509
               

               
Cow position:
               
chrX:12979835-12979601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 136
               

               
Conread position:
               
268-509
               

               
Cow position:
               
chrX:25036987-25037226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
193, 130
               

               
Conread position:
               
268-509
               

               
Cow position:
               
chrX:26881565-26881328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
268-509
               

               
Cow position:
               
chrX:32821029-32821274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
141, 48
               

               
Conread position:
               
268-509
               

               
Cow position:
               
chrX:40480868-40480614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
89, 6
               

               
Conread position:
               
268-510
               

               
Cow position:
               
chrX:34505049-34504818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
81, 117
               

               
Conread position:
               
268-513
               

               
Cow position:
               
chrX:40035441-40035203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 136
               

               
Conread position:
               
269-417
               

               
Cow position:
               
chrX:4616010-4615865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
25, 114
               

               
Conread position:
               
269-464
               

               
Cow position:
               
chrX:11073190-11072994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
145, 156
               

               
Conread position:
               
269-496
               

               
Cow position:
               
chrX:35273364-35273593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
78, 62
               

               
Conread position:
               
269-503
               

               
Cow position:
               
chrX:5134476-5134702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
83, 19
               

               
Conread position:
               
269-503
               

               
Cow position:
               
chrX:12972682-12972906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
30, 137
               

               
Conread position:
               
269-503
               

               
Cow position:
               
chrX:16836285-16836066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
269-504
               

               
Cow position:
               
chrX:29733591-29733363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
143, 199
               

               
Conread position:
               
269-504
               

               
Cow position:
               
chrX:36283339-36283569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
36, 117
               

               
Conread position:
               
269-504
               

               
Cow position:
               
chrX:37955848-37956074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
269-505
               

               
Cow position:
               
chrX:11633683-11633913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
232, 136
               

               
Conread position:
               
269-506
               

               
Cow position:
               
chrX:36356113-36356335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
270-505
               

               
Cow position:
               
chrX:38560561-38560780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
270-508
               

               
Cow position:
               
chrX:12437268-12437050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
270-510
               

               
Cow position:
               
chrX:32943074-32942845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
272-397
               

               
Cow position:
               
chrX:29585123-29585248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
272-438
               

               
Cow position:
               
chrX:43730219-43730056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
272-456
               

               
Cow position:
               
chrX:33539167-33539357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 151
               

               
Conread position:
               
272-488
               

               
Cow position:
               
chrX:6690256-6690030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
141, 214
               

               
Conread position:
               
272-503
               

               
Cow position:
               
chrX:22115313-22115086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 131
               

               
Conread position:
               
272-503
               

               
Cow position:
               
chrX:22283842-22284067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 70
               

               
Conread position:
               
272-504
               

               
Cow position:
               
chrX:46032723-46032499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
104, 96
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chrX:41941627-41941853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
272-507
               

               
Cow position:
               
chrX:26843265-26843034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
272-507
               

               
Cow position:
               
chrX:40826746-40826517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
229, 8
               

               
Conread position:
               
272-508
               

               
Cow position:
               
chrX:15147189-15146966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
272-509
               

               
Cow position:
               
chrX:22387242-22387009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
152, 48
               

               
Conread position:
               
272-509
               

               
Cow position:
               
chrX:25049278-25049047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
272-509
               

               
Cow position:
               
chrX:38967892-38968129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
272-509
               

               
Cow position:
               
chrX:45110659-45110885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
273-504
               

               
Cow position:
               
chrX:15231655-15231430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
273-505
               

               
Cow position:
               
chrX:14883951-14883727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 134
               

               
Conread position:
               
273-505
               

               
Cow position:
               
chrX:27394021-27393788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
135, 204
               

               
Conread position:
               
273-511
               

               
Cow position:
               
chrX:1122538-1122311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
275-509
               

               
Cow position:
               
chrX:29050257-29050476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
276-471
               

               
Cow position:
               
chrX:41862372-41862556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
276-509
               

               
Cow position:
               
chrX:28940250-28940478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 5
               

               
Conread position:
               
280-500
               

               
Cow position:
               
chrX:17794993-17795204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
280-502
               

               
Cow position:
               
chrX:41270974-41270740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
280-504
               

               
Cow position:
               
chrX:4632846-4632625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
44, 121
               

               
Conread position:
               
280-505
               

               
Cow position:
               
chrX:23266427-23266655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
129, 210
               

               
Conread position:
               
280-508
               

               
Cow position:
               
chrX:29467766-29467549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
281-503
               

               
Cow position:
               
chrX:44054815-44055031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
281-509
               

               
Cow position:
               
chrX:15545895-15546116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
219, 92
               

               
Conread position:
               
282-423
               

               
Cow position:
               
chrX:23091884-23092026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
282-438
               

               
Cow position:
               
chrX:35387910-35387758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
282-488
               

               
Cow position:
               
chrX:28878160-28877953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 118
               

               
Conread position:
               
282-505
               

               
Cow position:
               
chrX:4559753-4559964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
282-506
               

               
Cow position:
               
chrX:32910118-32910328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
282-508
               

               
Cow position:
               
chrX:38094502-38094293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
282-509
               

               
Cow position:
               
chrX:16324000-16323781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
282-509
               

               
Cow position:
               
chrX:47349530-47349769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
282-511
               

               
Cow position:
               
chrX:25815887-25815662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
219, 92
               

               
Conread position:
               
283-510
               

               
Cow position:
               
chrX:35658814-35659029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
284-495
               

               
Cow position:
               
chrX:31479987-31480186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
284-507
               

               
Cow position:
               
chrX:7513503-7513741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
9, 53
               

               
Conread position:
               
285-500
               

               
Cow position:
               
chrX:9635173-9634967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
286-504
               

               
Cow position:
               
chrX:41454936-41454724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
86, 92
               

               
Conread position:
               
287-523
               

               
Cow position:
               
chrX:23497672-23497451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
288-510
               

               
Cow position:
               
chrX:32877355-32877144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
289-431
               

               
Cow position:
               
chrX:40355056-40355194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
290-400
               

               
Cow position:
               
chrX:20340621-20340511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
290-498
               

               
Cow position:
               
chrX:34508566-34508783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
120, 171
               

               
Conread position:
               
290-502
               

               
Cow position:
               
chrX:43012126-43011916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
124, 17
               

               
Conread position:
               
290-504
               

               
Cow position:
               
chrX:35285195-35285404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
211, 115
               

               
Conread position:
               
290-507
               

               
Cow position:
               
chrX:31744983-31744783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
18, 117
               

               
Conread position:
               
292-508
               

               
Cow position:
               
chrX:46079109-46079321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
117, 87
               

               
Conread position:
               
293-448
               

               
Cow position:
               
chrX:28098351-28098506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
140, 109
               

               
Conread position:
               
293-506
               

               
Cow position:
               
chrX:37062560-37062336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
132, 105
               

               
Conread position:
               
293-508
               

               
Cow position:
               
chrX:7351325-7351534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
293-509
               

               
Cow position:
               
chrX:19018806-19018594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
293-509
               

               
Cow position:
               
chrX:27705611-27705822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
208, 97
               

               
Conread position:
               
293-510
               

               
Cow position:
               
chrX:32866900-32867105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
294-402
               

               
Cow position:
               
chrX:21573599-21573706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
294-498
               

               
Cow position:
               
chrX:7911046-7910850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 72
               

               
Conread position:
               
294-505
               

               
Cow position:
               
chrX:20583692-20583890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
294-507
               

               
Cow position:
               
chrX:23359085-23358885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
295-503
               

               
Cow position:
               
chrX:5026283-5026479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
176, 105
               

               
Conread position:
               
295-505
               

               
Cow position:
               
chrX:47855008-47855207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
296-508
               

               
Cow position:
               
chrX:40046547-40046335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
140, 40
               

               
Conread position:
               
296-509
               

               
Cow position:
               
chrX:2314591-2314383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
97, 92
               

               
Conread position:
               
297-454
               

               
Cow position:
               
chrX:29563053-29562902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
297-503
               

               
Cow position:
               
chrX:24425973-24425773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
298-401
               

               
Cow position:
               
chrX:29331965-29331862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
298-402
               

               
Cow position:
               
chrX:4942228-4942124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
298-441
               

               
Cow position:
               
chrX:41939853-41939997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
127, 104
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chrX:41453332-41453527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
298-509
               

               
Cow position:
               
chrX:8326934-8327139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
299-469
               

               
Cow position:
               
chrX:29688144-29687981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
300-508
               

               
Cow position:
               
chrX:20345483-20345685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
200, 12
               

               
Conread position:
               
300-509
               

               
Cow position:
               
chrX:34441422-34441218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
201, 89
               

               
Conread position:
               
301-417
               

               
Cow position:
               
chrX:11578616-11578498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
304-489
               

               
Cow position:
               
chrX:25286685-25286508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
304-489
               

               
Cow position:
               
chrX:30824025-30824199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
304-505
               

               
Cow position:
               
chrX:34991400-34991591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
304-509
               

               
Cow position:
               
chrX:27206833-27207028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
46, 105
               

               
Conread position:
               
307-505
               

               
Cow position:
               
chrX:6480557-6480365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
18, 9
               

               
Conread position:
               
307-509
               

               
Cow position:
               
chrX:41435510-41435308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
310-499
               

               
Cow position:
               
chrX:31983543-31983354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 95
               

               
Conread position:
               
310-504
               

               
Cow position:
               
chrX:27442497-27442309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
310-505
               

               
Cow position:
               
chrX:23471824-23471638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
310-506
               

               
Cow position:
               
chrX:41858840-41858653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 94
               

               
Conread position:
               
310-509
               

               
Cow position:
               
chrX:25282996-25282780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
310-509
               

               
Cow position:
               
chrX:36367893-36367700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
311-500
               

               
Cow position:
               
chrX:4612839-4612649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 78
               

               
Conread position:
               
311-501
               

               
Cow position:
               
chrX:35681610-35681793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
311-502
               

               
Cow position:
               
chrX:35431196-35431014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
311-503
               

               
Cow position:
               
chrX:8642089-8642273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
311-503
               

               
Cow position:
               
chrX:35409795-35409980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 59
               

               
Conread position:
               
311-504
               

               
Cow position:
               
chrX:14951310-14951124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
311-504
               

               
Cow position:
               
chrX:19203303-19203116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
311-504
               

               
Cow position:
               
chrX:29451508-29451316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
74, 62
               

               
Conread position:
               
311-505
               

               
Cow position:
               
chrX:27416136-27416325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
311-505
               

               
Cow position:
               
chrX:40452041-40451838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
106, 78
               

               
Conread position:
               
311-506
               

               
Cow position:
               
chrX:27270418-27270600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
54, 92
               

               
Conread position:
               
311-506
               

               
Cow position:
               
chrX:46068716-46068533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
311-507
               

               
Cow position:
               
chrX:4403360-4403550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
311-507
               

               
Cow position:
               
chrX:34270604-34270793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
311-507
               

               
Cow position:
               
chrX:48822299-48822110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
311-508
               

               
Cow position:
               
chrX:1960382-1960191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
190, 89
               

               
Conread position:
               
311-508
               

               
Cow position:
               
chrX:28067893-28068085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
190, 91
               

               
Conread position:
               
311-508
               

               
Cow position:
               
chrX:34398741-34398550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
311-509
               

               
Cow position:
               
chrX:5097756-5097560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
41, 104
               

               
Conread position:
               
311-509
               

               
Cow position:
               
chrX:8759668-8759858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 44
               

               
Conread position:
               
311-509
               

               
Cow position:
               
chrX:17498365-17498558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
190, 79
               

               
Conread position:
               
311-509
               

               
Cow position:
               
chrX:30962834-30962640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
190, 73
               

               
Conread position:
               
311-510
               

               
Cow position:
               
chrX:11517937-11517744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
311-510
               

               
Cow position:
               
chrX:25930680-25930875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
111, 73
               

               
Conread position:
               
311-521
               

               
Cow position:
               
chrX:16556174-16555978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
312-494
               

               
Cow position:
               
chrX:36922098-36921922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
312-503
               

               
Cow position:
               
chrX:41991090-41990895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
312-505
               

               
Cow position:
               
chrX:6634388-6634575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
312-508
               

               
Cow position:
               
chrX:42875256-42875442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
312-509
               

               
Cow position:
               
chrX:597430-597244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
312-509
               

               
Cow position:
               
chrX:6640471-6640658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
17, 13
               

               
Conread position:
               
313-458
               

               
Cow position:
               
chrX:31252453-31252591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
315-504
               

               
Cow position:
               
chrX:10415206-10415023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
315-505
               

               
Cow position:
               
chrX:6389128-6389309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
315-506
               

               
Cow position:
               
chrX:40336958-40337142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
315-506
               

               
Cow position:
               
chrX:40648941-40649133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
315-508
               

               
Cow position:
               
chrX:11653817-11654000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
315-509
               

               
Cow position:
               
chrX:27667472-27667674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
315-509
               

               
Cow position:
               
chrX:41790382-41790193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
315-510
               

               
Cow position:
               
chrX:43014626-43014425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
316-493
               

               
Cow position:
               
chrX:44995546-44995718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
316-503
               

               
Cow position:
               
chrX:19000174-19000355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
316-504
               

               
Cow position:
               
chrX:47100549-47100365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
316-509
               

               
Cow position:
               
chrX:17524336-17524149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
316-509
               

               
Cow position:
               
chrX:37867301-37867488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
316-510
               

               
Cow position:
               
chrX:36351706-36351892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
316-515
               

               
Cow position:
               
chrX:41166777-41166587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
188, 77
               

               
Conread position:
               
320-510
               

               
Cow position:
               
chrX:11602433-11602252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 26
               

               
Conread position:
               
322-437
               

               
Cow position:
               
chrX:17926750-17926862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
322-508
               

               
Cow position:
               
chrX:27170793-27170967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
40, 83
               

               
Conread position:
               
323-504
               

               
Cow position:
               
chrX:5915243-5915421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
324-494
               

               
Cow position:
               
chrX:42282633-42282796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
324-509
               

               
Cow position:
               
chrX:41363803-41363616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
324-510
               

               
Cow position:
               
chrX:15100039-15100215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
175, 64
               

               
Conread position:
               
325-504
               

               
Cow position:
               
chrX:14925329-14925503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
176, 63
               

               
Conread position:
               
325-504
               

               
Cow position:
               
chrX:44040233-44040406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
325-506
               

               
Cow position:
               
chrX:296448-296623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
325-508
               

               
Cow position:
               
chrX:12807-12976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
325-509
               

               
Cow position:
               
chrX:51844-51668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
325-523
               

               
Cow position:
               
chrX:6267719-6267918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 55
               

               
Conread position:
               
326-502
               

               
Cow position:
               
chrX:26692269-26692438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 141
               

               
Conread position:
               
327-505
               

               
Cow position:
               
chrX:14135737-14135905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
327-506
               

               
Cow position:
               
chrX:23485580-23485761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
328-504
               

               
Cow position:
               
chrX:10278930-10279103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
328-504
               

               
Cow position:
               
chrX:11589307-11589138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
328-505
               

               
Cow position:
               
chrX:5017361-5017186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
84, 43
               

               
Conread position:
               
328-507
               

               
Cow position:
               
chrX:42086887-42087058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
330-499
               

               
Cow position:
               
chrX:48574295-48574130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
330-510
               

               
Cow position:
               
chrX:47063216-47063033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
331-444
               

               
Cow position:
               
chrX:19407672-19407559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
94, 61
               

               
Conread position:
               
331-491
               

               
Cow position:
               
chrX:4366403-4366561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 80
               

               
Conread position:
               
331-499
               

               
Cow position:
               
chrX:26882017-26881855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
331-505
               

               
Cow position:
               
chrX:41215385-41215553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
331-506
               

               
Cow position:
               
chrX:1385234-1385426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
331-506
               

               
Cow position:
               
chrX:4444484-4444659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 70
               

               
Conread position:
               
331-506
               

               
Cow position:
               
chrX:29682048-29681887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
331-507
               

               
Cow position:
               
chrX:27447772-27447949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
331-509
               

               
Cow position:
               
chrX:4750269-4750104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
331-509
               

               
Cow position:
               
chrX:39642559-39642394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
331-509
               

               
Cow position:
               
chrX:40556396-40556228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 75
               

               
Conread position:
               
331-510
               

               
Cow position:
               
chrX:28597075-28596893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
331-510
               

               
Cow position:
               
chrX:37867495-37867670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
170, 69
               

               
Conread position:
               
331-511
               

               
Cow position:
               
chrX:16348508-16348319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 179
               

               
Conread position:
               
332-509
               

               
Cow position:
               
chrX:2206535-2206356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
334-417
               

               
Cow position:
               
chrX:31500561-31500645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
85
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
334-509
               

               
Cow position:
               
chrX:23182917-23182733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
106, 72
               

               
Conread position:
               
335-507
               

               
Cow position:
               
chrX:21910961-21910783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
337-509
               

               
Cow position:
               
chrX:11670756-11670922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
164, 7
               

               
Conread position:
               
339-511
               

               
Cow position:
               
chrX:36961787-36961945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
339-523
               

               
Cow position:
               
chrX:42994660-42994846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
340-489
               

               
Cow position:
               
chrX:11813145-11813288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
340-504
               

               
Cow position:
               
chrX:30789459-30789300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
340-509
               

               
Cow position:
               
chrX:3494973-3494816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
340-509
               

               
Cow position:
               
chrX:45657868-45657701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
341-502
               

               
Cow position:
               
chrX:13785149-13784985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
69, 108
               

               
Conread position:
               
341-504
               

               
Cow position:
               
chrX:11674183-11674341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 43
               

               
Conread position:
               
341-508
               

               
Cow position:
               
chrX:4486951-4486791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
66, 81
               

               
Conread position:
               
342-499
               

               
Cow position:
               
chrX:43059177-43059032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
342-508
               

               
Cow position:
               
chrX:47730556-47730714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
342-509
               

               
Cow position:
               
chrX:42506875-42506712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
342-512
               

               
Cow position:
               
chrX:231944-231789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
343-503
               

               
Cow position:
               
chrX:3542931-3543093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
78, 62
               

               
Conread position:
               
345-508
               

               
Cow position:
               
chrX:17744700-17744854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
346-498
               

               
Cow position:
               
chrX:37717800-37717945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
346-509
               

               
Cow position:
               
chrX:38654363-38654198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
347-506
               

               
Cow position:
               
chrX:31279845-31279696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
347-511
               

               
Cow position:
               
chrX:47979376-47979534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
350-510
               

               
Cow position:
               
chrX:43028314-43028464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
352-507
               

               
Cow position:
               
chrX:37176958-37177099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
361-509
               

               
Cow position:
               
chrX:11717639-11717490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
366-503
               

               
Cow position:
               
chrX:15534114-15533982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
367-509
               

               
Cow position:
               
chrX:48044134-48043989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
389-509
               

               
Cow position:
               
chrX:38080267-38080383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
112, 9
               

               
Conread position:
               
392-509
               

               
Cow position:
               
chrX:33865184-33865063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
421-510
               

               
Cow position:
               
chrX:8925826-8925915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
90
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.