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Cow genome map

           
Conread name:
           
Ss1.1-mCP1-MI-P-CP1-nzc-k-01-0-UI.s1.3
        

               
Conread position:
               
330-489
               

               
Cow position:
               
chr10:12668748-12668909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 136
               

               
Conread position:
               
330-684
               

               
Cow position:
               
chr10:47916783-47917142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
14, 118
               

               
Conread position:
               
331-684
               

               
Cow position:
               
chr10:29107456-29107114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 28
               

               
Conread position:
               
333-674
               

               
Cow position:
               
chr10:21516686-21516347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 83
               

               
Conread position:
               
334-497
               

               
Cow position:
               
chr10:46193452-46193611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
335-684
               

               
Cow position:
               
chr10:50554270-50553940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
210, 15
               

               
Conread position:
               
338-472
               

               
Cow position:
               
chr10:42633243-42633378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
338-482
               

               
Cow position:
               
chr10:41654630-41654772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
82, 108
               

               
Conread position:
               
338-492
               

               
Cow position:
               
chr10:22347282-22347431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
82, 102
               

               
Conread position:
               
338-492
               

               
Cow position:
               
chr10:60362165-60362314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
83, 123
               

               
Conread position:
               
338-503
               

               
Cow position:
               
chr10:24783823-24783661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
20, 86
               

               
Conread position:
               
338-506
               

               
Cow position:
               
chr10:54127883-54128050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
82, 125
               

               
Conread position:
               
338-522
               

               
Cow position:
               
chr10:6536054-6536240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 145
               

               
Conread position:
               
338-525
               

               
Cow position:
               
chr10:40419444-40419624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
82, 141
               

               
Conread position:
               
338-531
               

               
Cow position:
               
chr10:58095712-58095517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 120
               

               
Conread position:
               
338-541
               

               
Cow position:
               
chr10:51085833-51086035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-545
               

               
Cow position:
               
chr10:21080193-21080403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
48, 154
               

               
Conread position:
               
338-551
               

               
Cow position:
               
chr10:28947794-28948006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
83, 112
               

               
Conread position:
               
338-567
               

               
Cow position:
               
chr10:12546314-12546543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-567
               

               
Cow position:
               
chr10:55095597-55095825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-571
               

               
Cow position:
               
chr10:24123728-24123497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
83, 105
               

               
Conread position:
               
338-571
               

               
Cow position:
               
chr10:37108709-37108952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
18, 157
               

               
Conread position:
               
338-575
               

               
Cow position:
               
chr10:53980604-53980363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 145
               

               
Conread position:
               
338-577
               

               
Cow position:
               
chr10:39440491-39440726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
207, 85
               

               
Conread position:
               
338-584
               

               
Cow position:
               
chr10:58599853-58600095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
83, 145
               

               
Conread position:
               
338-607
               

               
Cow position:
               
chr10:31540695-31540958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
172, 86
               

               
Conread position:
               
338-614
               

               
Cow position:
               
chr10:35023993-35024269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
83, 147
               

               
Conread position:
               
338-615
               

               
Cow position:
               
chr10:20368808-20368550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
170, 78
               

               
Conread position:
               
338-622
               

               
Cow position:
               
chr10:24975502-24975222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
338-627
               

               
Cow position:
               
chr10:48745484-48745196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
64, 88
               

               
Conread position:
               
338-636
               

               
Cow position:
               
chr10:57479334-57479046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
211, 91
               

               
Conread position:
               
338-639
               

               
Cow position:
               
chr10:19493625-19493333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-663
               

               
Cow position:
               
chr10:12102055-12101740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 104
               

               
Conread position:
               
338-666
               

               
Cow position:
               
chr10:7279768-7279444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 83
               

               
Conread position:
               
338-666
               

               
Cow position:
               
chr10:42335293-42334980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
82, 103
               

               
Conread position:
               
338-666
               

               
Cow position:
               
chr10:64220133-64219825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
5, 91
               

               
Conread position:
               
338-667
               

               
Cow position:
               
chr10:4996998-4996681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
338-667
               

               
Cow position:
               
chr10:37772222-37772548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 116
               

               
Conread position:
               
338-668
               

               
Cow position:
               
chr10:4560234-4559921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
82, 50
               

               
Conread position:
               
338-668
               

               
Cow position:
               
chr10:14854952-14855271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
338-668
               

               
Cow position:
               
chr10:38723604-38723932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 132
               

               
Conread position:
               
338-669
               

               
Cow position:
               
chr10:22619078-22618754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 108
               

               
Conread position:
               
338-670
               

               
Cow position:
               
chr10:8324802-8324472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 157
               

               
Conread position:
               
338-670
               

               
Cow position:
               
chr10:28529068-28528740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
338-671
               

               
Cow position:
               
chr10:24294949-24294636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 50
               

               
Conread position:
               
338-671
               

               
Cow position:
               
chr10:57987373-57987040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-672
               

               
Cow position:
               
chr10:14845599-14845926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
210, 83
               

               
Conread position:
               
338-674
               

               
Cow position:
               
chr10:39776668-39776341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 59
               

               
Conread position:
               
338-674
               

               
Cow position:
               
chr10:46240214-46240549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 162
               

               
Conread position:
               
338-680
               

               
Cow position:
               
chr10:32827080-32827414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
78, 102
               

               
Conread position:
               
338-680
               

               
Cow position:
               
chr10:39849912-39849555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 187
               

               
Conread position:
               
338-682
               

               
Cow position:
               
chr10:37127455-37127104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:6287076-6287417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:13851473-13851818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:17958411-17958755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:22343799-22344150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:23848292-23848637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:25651083-25650747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 13
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:31855809-31856154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:32364270-32364614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 121
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:39814065-39813720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:40348327-40347986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:46762538-46762873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:48375117-48374772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 149
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:51950767-51950425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:53172991-53172646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:54929641-54929298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr10:57555009-57554664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:1379830-1380175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:1663631-1663293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 132
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:2118697-2118351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:4500293-4500611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:4584847-4584510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:7896152-7895809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:8292460-8292802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 83
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:10584462-10584802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 93
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:14333515-14333169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:15488874-15489212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:15621054-15620710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 151
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:15831739-15831400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:16552948-16552602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
87, 44
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:19543096-19542764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
82, 69
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:19842016-19842342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 66
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:20268365-20268020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 163
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:21450866-21450527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 16
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:21489277-21489618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 97
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:25340483-25340825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 155
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:25564223-25563884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 109
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:26293159-26292814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:29629930-29629597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 66
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:29844341-29844005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 66
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:30719022-30719365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:32086016-32086362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 118
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:32280176-32280522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:32318788-32319112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:32703092-32703438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:33425218-33424866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 114
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:35825014-35824668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:38343040-38342689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 152
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:38842493-38842839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:39038726-39038376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 85
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:39210090-39210432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:40642270-40642608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 158
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:41140681-41140351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
83, 13
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:41159751-41160089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:41569438-41569777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:41879266-41879612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 148
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:47908952-47909291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 102
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:48169861-48170198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 56
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:50018029-50017690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 109
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:50313962-50314308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 148
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:52827282-52826955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 31
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:59465917-59465572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 210
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:62406439-62406098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 36
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:63625392-63625737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 109
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr10:68097286-68096943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 149
               

               
Conread position:
               
341-571
               

               
Cow position:
               
chr10:923443-923216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 144
               

               
Conread position:
               
341-627
               

               
Cow position:
               
chr10:38850589-38850872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 83
               

               
Conread position:
               
341-661
               

               
Cow position:
               
chr10:38543578-38543270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
206, 103
               

               
Conread position:
               
341-671
               

               
Cow position:
               
chr10:18022390-18022696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr10:19142278-19141937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 118
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr10:40149817-40149487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 80
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr10:42115588-42115915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 147
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr10:48652598-48652939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
80, 47
               

               
Conread position:
               
344-602
               

               
Cow position:
               
chr10:42390749-42390504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
172, 79
               

               
Conread position:
               
344-673
               

               
Cow position:
               
chr10:19608009-19607693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
5, 58
               

               
Conread position:
               
345-587
               

               
Cow position:
               
chr10:41635718-41635961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
80, 141
               

               
Conread position:
               
346-602
               

               
Cow position:
               
chr10:39444019-39443763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
40, 118
               

               
Conread position:
               
347-684
               

               
Cow position:
               
chr10:31526069-31526393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
50, 66
               

               
Conread position:
               
347-684
               

               
Cow position:
               
chr10:33868849-33868511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 152
               

               
Conread position:
               
350-684
               

               
Cow position:
               
chr10:53319917-53319605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 36
               

               
Conread position:
               
354-672
               

               
Cow position:
               
chr10:2243307-2243617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 70
               

               
Conread position:
               
355-684
               

               
Cow position:
               
chr10:44706363-44706035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 104
               

               
Conread position:
               
358-673
               

               
Cow position:
               
chr10:44103486-44103803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 95
               

               
Conread position:
               
359-566
               

               
Cow position:
               
chr10:22907857-22907653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 78
               

               
Conread position:
               
359-684
               

               
Cow position:
               
chr10:24298143-24297832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 64
               

               
Conread position:
               
359-684
               

               
Cow position:
               
chr10:42743948-42744272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 102
               

               
Conread position:
               
360-682
               

               
Cow position:
               
chr10:44260488-44260159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 86
               

               
Conread position:
               
360-684
               

               
Cow position:
               
chr10:18040339-18040669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
363-544
               

               
Cow position:
               
chr10:23409752-23409932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 135
               

               
Conread position:
               
363-545
               

               
Cow position:
               
chr10:11109315-11109134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
58, 123
               

               
Conread position:
               
363-568
               

               
Cow position:
               
chr10:37074544-37074348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
363-571
               

               
Cow position:
               
chr10:61133495-61133704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
57, 135
               

               
Conread position:
               
363-674
               

               
Cow position:
               
chr10:34667669-34667365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
121, 41
               

               
Conread position:
               
363-675
               

               
Cow position:
               
chr10:21738373-21738063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 8
               

               
Conread position:
               
363-683
               

               
Cow position:
               
chr10:3287764-3287448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
58, 84
               

               
Conread position:
               
363-684
               

               
Cow position:
               
chr10:16928518-16928830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 47
               

               
Conread position:
               
363-684
               

               
Cow position:
               
chr10:19513586-19513904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 79
               

               
Conread position:
               
363-684
               

               
Cow position:
               
chr10:22103846-22104155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
363-684
               

               
Cow position:
               
chr10:28031574-28031261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 125
               

               
Conread position:
               
363-684
               

               
Cow position:
               
chr10:41386631-41386318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 128
               

               
Conread position:
               
363-684
               

               
Cow position:
               
chr10:53318434-53318114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
58, 91
               

               
Conread position:
               
364-491
               

               
Cow position:
               
chr10:8458290-8458419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
364-577
               

               
Cow position:
               
chr10:36513751-36513958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
57, 120
               

               
Conread position:
               
364-601
               

               
Cow position:
               
chr10:36467504-36467267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
56, 125
               

               
Conread position:
               
364-668
               

               
Cow position:
               
chr10:6255095-6254803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
364-674
               

               
Cow position:
               
chr10:21897291-21896989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 48
               

               
Conread position:
               
364-681
               

               
Cow position:
               
chr10:17137219-17137521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 129
               

               
Conread position:
               
364-684
               

               
Cow position:
               
chr10:24309838-24309524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
56, 124
               

               
Conread position:
               
365-684
               

               
Cow position:
               
chr10:278996-278678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 123
               

               
Conread position:
               
365-684
               

               
Cow position:
               
chr10:51557753-51558072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 133
               

               
Conread position:
               
365-684
               

               
Cow position:
               
chr10:51781084-51780766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 58
               

               
Conread position:
               
366-577
               

               
Cow position:
               
chr10:44424279-44424064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 35
               

               
Conread position:
               
366-676
               

               
Cow position:
               
chr10:20936503-20936201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
146, 57
               

               
Conread position:
               
368-488
               

               
Cow position:
               
chr10:55010064-55010186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
369-684
               

               
Cow position:
               
chr10:47156077-47156391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 126
               

               
Conread position:
               
370-684
               

               
Cow position:
               
chr10:14865214-14865527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
370-684
               

               
Cow position:
               
chr10:30688346-30688672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
370-684
               

               
Cow position:
               
chr10:32008437-32008750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 127
               

               
Conread position:
               
371-684
               

               
Cow position:
               
chr10:20538671-20538988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 36
               

               
Conread position:
               
372-683
               

               
Cow position:
               
chr10:5868204-5867889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
376-684
               

               
Cow position:
               
chr10:65732743-65733039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
45, 67
               

               
Conread position:
               
377-684
               

               
Cow position:
               
chr10:21426931-21426627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
387-684
               

               
Cow position:
               
chr10:25004306-25004586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
161, 36
               

               
Conread position:
               
389-684
               

               
Cow position:
               
chr10:30683111-30682816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
394-684
               

               
Cow position:
               
chr10:27787003-27787285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 89
               

               
Conread position:
               
399-683
               

               
Cow position:
               
chr10:8681011-8681295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
401-663
               

               
Cow position:
               
chr10:60704637-60704380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
147, 57
               

               
Conread position:
               
404-684
               

               
Cow position:
               
chr10:25255164-25255440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
411-596
               

               
Cow position:
               
chr10:32369945-32369765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
134, 35
               

               
Conread position:
               
412-545
               

               
Cow position:
               
chr10:22581866-22581736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
412-684
               

               
Cow position:
               
chr10:24756582-24756848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
412-684
               

               
Cow position:
               
chr10:26670078-26670343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 69
               

               
Conread position:
               
413-675
               

               
Cow position:
               
chr10:40821581-40821320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
90, 83
               

               
Conread position:
               
417-662
               

               
Cow position:
               
chr10:24966045-24966288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
128, 79
               

               
Conread position:
               
419-683
               

               
Cow position:
               
chr10:37532384-37532120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
53, 100
               

               
Conread position:
               
420-684
               

               
Cow position:
               
chr10:46173780-46173523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
126, 76
               

               
Conread position:
               
426-670
               

               
Cow position:
               
chr10:25889383-25889626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
430-673
               

               
Cow position:
               
chr10:42642953-42643205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
7, 55
               

               
Conread position:
               
434-684
               

               
Cow position:
               
chr10:41149315-41149068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
114, 55
               

               
Conread position:
               
446-683
               

               
Cow position:
               
chr10:32580674-32580909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
453-683
               

               
Cow position:
               
chr10:14806380-14806608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
454-668
               

               
Cow position:
               
chr10:49430092-49430303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
94, 8
               

               
Conread position:
               
454-684
               

               
Cow position:
               
chr10:27123103-27122880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
94, 42
               

               
Conread position:
               
468-684
               

               
Cow position:
               
chr10:68276926-68276711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
470-684
               

               
Cow position:
               
chr10:19296937-19296726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
470-684
               

               
Cow position:
               
chr10:50198495-50198705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
77, 15
               

               
Conread position:
               
477-684
               

               
Cow position:
               
chr10:55099455-55099252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
486-684
               

               
Cow position:
               
chr10:8458703-8458901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
486-684
               

               
Cow position:
               
chr10:25073418-25073220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
487-684
               

               
Cow position:
               
chr10:12669127-12669325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 102
               

               
Conread position:
               
497-671
               

               
Cow position:
               
chr10:36445170-36444996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
497-673
               

               
Cow position:
               
chr10:55010302-55010474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
505-681
               

               
Cow position:
               
chr10:41772952-41772781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 66
               

               
Conread position:
               
505-684
               

               
Cow position:
               
chr10:34665268-34665088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
515-684
               

               
Cow position:
               
chr10:21415707-21415537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
516-683
               

               
Cow position:
               
chr10:54988365-54988533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
517-682
               

               
Cow position:
               
chr10:15531365-15531199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
517-684
               

               
Cow position:
               
chr10:32830147-32830317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
519-683
               

               
Cow position:
               
chr10:25633331-25633166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
519-684
               

               
Cow position:
               
chr10:37428958-37429123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 55
               
Show alignments to all cow chromosomes.