Cow genome map

Conread name: Ss1.1-mCP1-MI-P-CP1-nzc-k-01-0-UI.s1.3

Conread position: 337-684
Cow position: chr19:159509-159153 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 165

Conread position: 338-506
Cow position: chr19:5899149-5898984 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 83, 109

Conread position: 338-531
Cow position: chr19:16129721-16129907 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 83, 0

Conread position: 338-546
Cow position: chr19:2271759-2271554 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 80, 104

Conread position: 338-560
Cow position: chr19:774977-775199 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 83, 150

Conread position: 338-639
Cow position: chr19:23865811-23865513 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 208, 65

Conread position: 338-652
Cow position: chr19:33649831-33649519 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 33, 151

Conread position: 338-670
Cow position: chr19:3088964-3088634 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 149

Conread position: 338-671
Cow position: chr19:28795971-28795641 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 231
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 35, 128

Conread position: 338-673
Cow position: chr19:5248432-5248101 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 235
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 26, 159

Conread position: 338-674
Cow position: chr19:20107081-20107433 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 338-674
Cow position: chr19:30560531-30560857 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 239
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 83, 104

Conread position: 338-675
Cow position: chr19:28718877-28719207 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 216
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 87, 126

Conread position: 338-682
Cow position: chr19:7344390-7344731 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 50

Conread position: 338-682
Cow position: chr19:43147030-43147374 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 150

Conread position: 338-683
Cow position: chr19:1586897-1586554 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 146

Conread position: 338-683
Cow position: chr19:15445504-15445164 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 85

Conread position: 338-683
Cow position: chr19:16318253-16317909 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 150

Conread position: 338-683
Cow position: chr19:20610688-20611033 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 150

Conread position: 338-684
Cow position: chr19:40701-41035 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 126

Conread position: 338-684
Cow position: chr19:165766-165427 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 118

Conread position: 338-684
Cow position: chr19:206861-207206 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 115

Conread position: 338-684
Cow position: chr19:257670-258012 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 155

Conread position: 338-684
Cow position: chr19:354820-354494 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 228
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 41, 96

Conread position: 338-684
Cow position: chr19:375340-374993 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 246
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 78, 56

Conread position: 338-684
Cow position: chr19:1584822-1585169 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 141

Conread position: 338-684
Cow position: chr19:3586783-3586440 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 216
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 176, 85

Conread position: 338-684
Cow position: chr19:5731869-5732204 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 83

Conread position: 338-684
Cow position: chr19:7481581-7481235 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 160

Conread position: 338-684
Cow position: chr19:7490457-7490800 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 109

Conread position: 338-684
Cow position: chr19:9705825-9705483 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 46

Conread position: 338-684
Cow position: chr19:12775479-12775825 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 149

Conread position: 338-684
Cow position: chr19:21338487-21338131 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 150

Conread position: 338-684
Cow position: chr19:22511417-22511078 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 109

Conread position: 338-684
Cow position: chr19:28404212-28403868 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 150

Conread position: 338-684
Cow position: chr19:28579334-28578996 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 56

Conread position: 338-684
Cow position: chr19:32138564-32138219 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 239
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 169

Conread position: 338-684
Cow position: chr19:33943927-33944267 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 56

Conread position: 338-684
Cow position: chr19:38559928-38559586 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 83, 123

Conread position: 338-684
Cow position: chr19:38810787-38811110 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 242
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 81, 0

Conread position: 338-684
Cow position: chr19:39183183-39182837 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 160

Conread position: 338-684
Cow position: chr19:39392868-39393212 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 39

Conread position: 338-684
Cow position: chr19:40834905-40834562 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 69

Conread position: 338-684
Cow position: chr19:40850130-40849785 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 65

Conread position: 338-684
Cow position: chr19:40885388-40885044 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 109

Conread position: 338-684
Cow position: chr19:42297770-42297414 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 161

Conread position: 338-684
Cow position: chr19:42581928-42581586 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 81

Conread position: 338-684
Cow position: chr19:44758432-44758095 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 338-684
Cow position: chr19:52149178-52148848 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 105

Conread position: 340-578
Cow position: chr19:19177068-19176834 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 199, 83

Conread position: 341-606
Cow position: chr19:37683300-37683554 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 120

Conread position: 341-668
Cow position: chr19:27035297-27034980 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 230
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 82, 0

Conread position: 341-681
Cow position: chr19:44032830-44033161 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 238
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 169, 13

Conread position: 341-683
Cow position: chr19:436978-436637 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 239
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 52, 63

Conread position: 342-531
Cow position: chr19:17019911-17020098 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 74, 101

Conread position: 342-626
Cow position: chr19:24727316-24727036 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 15

Conread position: 342-684
Cow position: chr19:39666188-39665849 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 11

Conread position: 347-684
Cow position: chr19:28595750-28596069 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 95

Conread position: 350-684
Cow position: chr19:17882336-17882646 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 227
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 309, 62

Conread position: 354-684
Cow position: chr19:3175852-3176172 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 201, 69

Conread position: 355-684
Cow position: chr19:748886-748567 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 92

Conread position: 356-665
Cow position: chr19:2587568-2587884 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 212
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 63, 141

Conread position: 359-492
Cow position: chr19:44396465-44396330 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 64, 0

Conread position: 359-684
Cow position: chr19:5717260-5716916 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 252
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 62, 28

Conread position: 359-684
Cow position: chr19:33905448-33905762 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 62, 127

Conread position: 360-674
Cow position: chr19:32708553-32708864 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 220
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 61, 79

Conread position: 362-684
Cow position: chr19:30757618-30757919 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 148, 55

Conread position: 363-639
Cow position: chr19:28368811-28369061 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 184, 40

Conread position: 363-684
Cow position: chr19:33875797-33876117 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 85

Conread position: 364-614
Cow position: chr19:34657136-34656897 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 365-682
Cow position: chr19:36149030-36149361 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 231
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 56, 137

Conread position: 367-663
Cow position: chr19:21212426-21212135 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 198
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 53, 10

Conread position: 369-684
Cow position: chr19:3142022-3142343 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 234
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 52, 73

Conread position: 370-684
Cow position: chr19:5782127-5781828 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 230
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 51, 95

Conread position: 372-684
Cow position: chr19:33640488-33640775 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 211, 56

Conread position: 375-673
Cow position: chr19:336499-336208 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 218
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 46, 79

Conread position: 377-684
Cow position: chr19:25378331-25378638 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 126

Conread position: 382-674
Cow position: chr19:35382753-35382460 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 91

Conread position: 384-684
Cow position: chr19:36999945-36999663 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 206
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 36, 102

Conread position: 394-683
Cow position: chr19:3402581-3402299 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 155, 18

Conread position: 401-674
Cow position: chr19:39345515-39345250 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 188
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 182, 59

Conread position: 403-668
Cow position: chr19:13133526-13133270 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 178
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 410-684
Cow position: chr19:44461010-44460745 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 148, 5

Conread position: 427-639
Cow position: chr19:19388267-19388473 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 119, 59

Conread position: 452-674
Cow position: chr19:35981248-35981469 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 50, 94

Conread position: 458-683
Cow position: chr19:475021-474797 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 14, 39

Conread position: 466-684
Cow position: chr19:5901057-5901270 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 80, 30

Conread position: 468-683
Cow position: chr19:55165568-55165356 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 78, 5

Conread position: 468-684
Cow position: chr19:40017085-40016878 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 80, 28

Conread position: 472-673
Cow position: chr19:39749720-39749915 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 24

Conread position: 474-683
Cow position: chr19:22390964-22390757 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 72, 22

Conread position: 481-684
Cow position: chr19:890699-890496 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 67, 46

Conread position: 487-684
Cow position: chr19:343908-344105 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 24

Conread position: 487-684
Cow position: chr19:20126527-20126722 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 154
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 23, 37

Conread position: 489-673
Cow position: chr19:44396107-44395922 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 23

Conread position: 489-684
Cow position: chr19:12553729-12553533 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 59, 22

Conread position: 489-684
Cow position: chr19:30517312-30517503 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 68, 22

Conread position: 496-684
Cow position: chr19:266454-266643 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 16

Conread position: 507-684
Cow position: chr19:6554501-6554678 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 14, 117

Conread position: 512-682
Cow position: chr19:55842315-55842482 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 34, 93

Conread position: 535-684
Cow position: chr19:2270747-2270597 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Show alignments to all cow chromosomes.