Cow genome map

Conread name: Ss1.1-mCP1-MI-P-CP1-nzc-k-01-0-UI.s1.3

Conread position: 335-684
Cow position: chr25:16448388-16448061 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 242
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 88, 0

Conread position: 337-684
Cow position: chr25:10635230-10634881 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 150

Conread position: 337-684
Cow position: chr25:17656696-17657030 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 143

Conread position: 338-488
Cow position: chr25:15617069-15617221 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 83, 0

Conread position: 338-490
Cow position: chr25:14559195-14559040 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 338-491
Cow position: chr25:21948848-21948698 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 85, 0

Conread position: 338-506
Cow position: chr25:9394245-9394420 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 82, 155

Conread position: 338-506
Cow position: chr25:18452031-18452198 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 119
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 82, 147

Conread position: 338-533
Cow position: chr25:23999774-23999581 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 82, 148

Conread position: 338-541
Cow position: chr25:21966286-21966490 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 83, 123

Conread position: 338-545
Cow position: chr25:11658443-11658649 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 72, 149

Conread position: 338-545
Cow position: chr25:12940132-12939929 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 83, 104

Conread position: 338-579
Cow position: chr25:30154460-30154223 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 164
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 67, 63

Conread position: 338-611
Cow position: chr25:34673956-34674227 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 208, 77

Conread position: 338-615
Cow position: chr25:13771231-13770952 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 65, 15

Conread position: 338-620
Cow position: chr25:27522316-27522039 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 85, 33

Conread position: 338-621
Cow position: chr25:23774160-23773876 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 79, 149

Conread position: 338-624
Cow position: chr25:18250617-18250321 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 81, 113

Conread position: 338-631
Cow position: chr25:24215214-24214926 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 194
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 93, 44

Conread position: 338-639
Cow position: chr25:12700017-12700311 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 83, 103

Conread position: 338-639
Cow position: chr25:29359071-29359369 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 108

Conread position: 338-656
Cow position: chr25:34505774-34505457 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 121

Conread position: 338-671
Cow position: chr25:13352008-13352342 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 150

Conread position: 338-674
Cow position: chr25:41106485-41106824 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 12

Conread position: 338-675
Cow position: chr25:20099679-20100013 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 241
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 78, 148

Conread position: 338-675
Cow position: chr25:29803737-29803403 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 109

Conread position: 338-682
Cow position: chr25:13784892-13785235 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 159

Conread position: 338-683
Cow position: chr25:35552729-35553074 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 158

Conread position: 338-684
Cow position: chr25:10135747-10136081 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 47

Conread position: 338-684
Cow position: chr25:11042662-11043006 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 104

Conread position: 338-684
Cow position: chr25:11664711-11665057 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 40

Conread position: 338-684
Cow position: chr25:11828670-11828341 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 238
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 318, 88

Conread position: 338-684
Cow position: chr25:13959119-13959455 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 83

Conread position: 338-684
Cow position: chr25:16924089-16923750 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 89

Conread position: 338-684
Cow position: chr25:18191346-18191004 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 109

Conread position: 338-684
Cow position: chr25:18422765-18423105 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 63

Conread position: 338-684
Cow position: chr25:18489060-18489407 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 155

Conread position: 338-684
Cow position: chr25:18887433-18887084 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 160

Conread position: 338-684
Cow position: chr25:19338276-19337937 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 160

Conread position: 338-684
Cow position: chr25:19922857-19923200 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 157

Conread position: 338-684
Cow position: chr25:20773293-20772947 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 158

Conread position: 338-684
Cow position: chr25:24206369-24206032 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 124

Conread position: 338-684
Cow position: chr25:24656394-24656048 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 160

Conread position: 338-684
Cow position: chr25:26281064-26281407 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 104

Conread position: 338-684
Cow position: chr25:26929902-26930254 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 162

Conread position: 338-684
Cow position: chr25:28861917-28862254 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 104

Conread position: 338-684
Cow position: chr25:30809880-30810197 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 231
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 338-684
Cow position: chr25:32448191-32448537 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 57

Conread position: 338-684
Cow position: chr25:33261510-33261844 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 241
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 48, 87

Conread position: 338-684
Cow position: chr25:34495101-34494762 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 240
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 21, 68

Conread position: 338-684
Cow position: chr25:34510704-34510362 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 110

Conread position: 338-684
Cow position: chr25:34667684-34667348 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 161

Conread position: 338-684
Cow position: chr25:35562467-35562129 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 241
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 83, 121

Conread position: 338-684
Cow position: chr25:37647473-37647819 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 53

Conread position: 338-684
Cow position: chr25:38398494-38398838 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 233
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 90, 121

Conread position: 339-682
Cow position: chr25:11930474-11930167 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 237
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 81, 60

Conread position: 340-624
Cow position: chr25:3374716-3374438 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 197, 63

Conread position: 341-621
Cow position: chr25:33837464-33837743 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 155

Conread position: 341-666
Cow position: chr25:34344660-34344335 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 157

Conread position: 342-528
Cow position: chr25:25509016-25509199 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 32

Conread position: 342-615
Cow position: chr25:19409356-19409625 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 106

Conread position: 343-674
Cow position: chr25:15366211-15366522 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 236
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 82, 34

Conread position: 344-682
Cow position: chr25:27020286-27019951 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 144

Conread position: 344-684
Cow position: chr25:26900584-26900921 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 101

Conread position: 359-537
Cow position: chr25:26354664-26354841 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 62, 129

Conread position: 359-610
Cow position: chr25:40138738-40138492 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 123

Conread position: 360-678
Cow position: chr25:18324514-18324210 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 214
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 71, 101

Conread position: 360-683
Cow position: chr25:49264-49580 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 233
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 60, 105

Conread position: 363-577
Cow position: chr25:12173052-12172839 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 80

Conread position: 363-674
Cow position: chr25:23360251-23360564 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 136

Conread position: 363-681
Cow position: chr25:17555398-17555088 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 38

Conread position: 363-683
Cow position: chr25:14537598-14537278 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 135

Conread position: 363-684
Cow position: chr25:19017321-19017006 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 218
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 57, 68

Conread position: 363-684
Cow position: chr25:20631959-20632277 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 83

Conread position: 364-542
Cow position: chr25:18426361-18426537 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 59, 70

Conread position: 364-684
Cow position: chr25:21415896-21415580 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 182, 58

Conread position: 365-684
Cow position: chr25:35627136-35626826 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 45

Conread position: 371-673
Cow position: chr25:18179080-18179380 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 185
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 175, 69

Conread position: 372-684
Cow position: chr25:26455783-26456081 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 51

Conread position: 379-684
Cow position: chr25:12835486-12835182 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 118

Conread position: 382-673
Cow position: chr25:21146364-21146663 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 208
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 103

Conread position: 387-627
Cow position: chr25:37467637-37467875 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 59

Conread position: 394-684
Cow position: chr25:14010964-14011260 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 205
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 28, 58

Conread position: 395-684
Cow position: chr25:17586917-17586634 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 52

Conread position: 396-683
Cow position: chr25:32578562-32578275 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 102

Conread position: 402-674
Cow position: chr25:18268846-18268579 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 17, 66

Conread position: 404-683
Cow position: chr25:41099065-41098800 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 144, 17

Conread position: 419-684
Cow position: chr25:38634485-38634745 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 87, 41

Conread position: 420-684
Cow position: chr25:22150202-22150459 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 128, 25

Conread position: 421-684
Cow position: chr25:19106614-19106871 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 180
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 155, 30

Conread position: 424-684
Cow position: chr25:35568755-35568498 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 149
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 72, 0

Conread position: 427-684
Cow position: chr25:24732651-24732403 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 178
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 97, 57

Conread position: 441-683
Cow position: chr25:35648836-35648596 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 107, 55

Conread position: 443-684
Cow position: chr25:31513144-31513382 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 73, 51

Conread position: 472-684
Cow position: chr25:35756072-35755858 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 16, 40

Conread position: 487-684
Cow position: chr25:32898355-32898549 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 130

Conread position: 490-683
Cow position: chr25:14626255-14626057 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 23, 0

Conread position: 492-684
Cow position: chr25:21948345-21948165 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 19

Conread position: 500-684
Cow position: chr25:9494389-9494211 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 47, 12

Conread position: 516-684
Cow position: chr25:33689007-33688836 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 121

Conread position: 544-683
Cow position: chr25:24449986-24449847 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 547-684
Cow position: chr25:14962686-14962552 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 87, 0

Show alignments to all cow chromosomes.