Cow genome map

Conread name: Ss1.1-mCP1-MI-P-CP1-nzc-k-01-0-UI.s1.3

Conread position: 332-627
Cow position: chr27:10282225-10282538 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 215
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 89, 221

Conread position: 333-684
Cow position: chr27:8260911-8261254 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 247
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 15, 39

Conread position: 338-453
Cow position: chr27:25785690-25785574 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 338-459
Cow position: chr27:6016689-6016810 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 338-475
Cow position: chr27:24573840-24573701 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 338-477
Cow position: chr27:25786556-25786416 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 89, 0

Conread position: 338-481
Cow position: chr27:25884655-25884507 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 338-488
Cow position: chr27:20980824-20980969 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 338-497
Cow position: chr27:66555-66394 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 338-497
Cow position: chr27:25085801-25085965 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 338-512
Cow position: chr27:30448044-30447871 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 82, 126

Conread position: 338-527
Cow position: chr27:14270776-14270584 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 83, 148

Conread position: 338-538
Cow position: chr27:5985113-5985312 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 83, 150

Conread position: 338-666
Cow position: chr27:3233270-3232945 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 104

Conread position: 338-673
Cow position: chr27:24296993-24296658 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 160

Conread position: 338-674
Cow position: chr27:25801925-25801588 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 148

Conread position: 338-677
Cow position: chr27:5913187-5913526 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 160

Conread position: 338-679
Cow position: chr27:23293815-23294141 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 239
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 82, 20

Conread position: 338-683
Cow position: chr27:22798198-22797857 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 150

Conread position: 338-683
Cow position: chr27:25965714-25965354 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 82, 108

Conread position: 338-684
Cow position: chr27:1535442-1535779 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 151

Conread position: 338-684
Cow position: chr27:3991257-3991608 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 167

Conread position: 338-684
Cow position: chr27:3995640-3995301 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 149

Conread position: 338-684
Cow position: chr27:4981632-4981966 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 20

Conread position: 338-684
Cow position: chr27:8200060-8200401 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 109

Conread position: 338-684
Cow position: chr27:9331995-9332341 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 151

Conread position: 338-684
Cow position: chr27:9990956-9990612 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 251
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 27, 20

Conread position: 338-684
Cow position: chr27:10378185-10378527 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 46

Conread position: 338-684
Cow position: chr27:11433382-11433717 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 106, 72

Conread position: 338-684
Cow position: chr27:12263173-12262845 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 242
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 83, 154

Conread position: 338-684
Cow position: chr27:12749284-12749627 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 16

Conread position: 338-684
Cow position: chr27:15273821-15273479 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 72

Conread position: 338-684
Cow position: chr27:15374087-15374425 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 145, 77

Conread position: 338-684
Cow position: chr27:15635080-15634738 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 104

Conread position: 338-684
Cow position: chr27:19524464-19524118 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 149

Conread position: 338-684
Cow position: chr27:20809663-20810008 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 160

Conread position: 338-684
Cow position: chr27:21284942-21284601 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 251
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 45, 69

Conread position: 338-684
Cow position: chr27:21496644-21496966 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 20

Conread position: 338-684
Cow position: chr27:22743131-22742792 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 109

Conread position: 338-684
Cow position: chr27:26327314-26327656 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 53

Conread position: 338-684
Cow position: chr27:26553185-26552828 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 172

Conread position: 338-684
Cow position: chr27:26599192-26599523 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 20

Conread position: 338-684
Cow position: chr27:27194089-27193757 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 338-684
Cow position: chr27:27288749-27289095 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 150

Conread position: 338-684
Cow position: chr27:27730214-27729879 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 64

Conread position: 338-684
Cow position: chr27:28894260-28894620 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 236
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 86

Conread position: 338-684
Cow position: chr27:28923237-28923601 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 338-684
Cow position: chr27:30034416-30034762 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 149

Conread position: 341-683
Cow position: chr27:797353-797014 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 106

Conread position: 341-684
Cow position: chr27:8591319-8591664 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 236
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 80, 158

Conread position: 341-684
Cow position: chr27:16032136-16031803 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 128

Conread position: 341-684
Cow position: chr27:30571078-30571415 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 157

Conread position: 342-684
Cow position: chr27:1847119-1846784 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 238
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 78, 8

Conread position: 342-684
Cow position: chr27:28294604-28294267 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 81

Conread position: 344-684
Cow position: chr27:22013103-22012764 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 231
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 82, 142

Conread position: 352-633
Cow position: chr27:28012171-28012455 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 73, 34

Conread position: 356-684
Cow position: chr27:15874785-15874454 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 241
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 46, 118

Conread position: 359-674
Cow position: chr27:17567405-17567696 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 188, 57

Conread position: 360-684
Cow position: chr27:13900173-13900491 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 82

Conread position: 363-525
Cow position: chr27:29857513-29857673 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 101

Conread position: 363-566
Cow position: chr27:15332123-15332318 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 184, 56

Conread position: 363-684
Cow position: chr27:166637-166327 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 80

Conread position: 363-684
Cow position: chr27:15034820-15034498 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 136

Conread position: 363-684
Cow position: chr27:23318640-23318327 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 21

Conread position: 364-684
Cow position: chr27:31267514-31267828 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 64

Conread position: 366-599
Cow position: chr27:30536273-30536502 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 182, 57

Conread position: 370-515
Cow position: chr27:7926275-7926128 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 378-566
Cow position: chr27:10324796-10324616 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 43, 18

Conread position: 391-684
Cow position: chr27:27665318-27665600 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 30, 52

Conread position: 397-571
Cow position: chr27:25033775-25033601 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 23, 91

Conread position: 398-611
Cow position: chr27:25358364-25358158 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 172
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 23, 90

Conread position: 401-684
Cow position: chr27:1676220-1675937 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 143, 85

Conread position: 404-612
Cow position: chr27:23905127-23905334 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 16, 83

Conread position: 408-684
Cow position: chr27:27278047-27278309 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 43

Conread position: 412-631
Cow position: chr27:22675395-22675168 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 50, 104

Conread position: 412-639
Cow position: chr27:11488019-11488245 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 8, 78

Conread position: 413-684
Cow position: chr27:25988712-25988968 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 187
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 72, 0

Conread position: 415-545
Cow position: chr27:28251766-28251893 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 415-683
Cow position: chr27:18696668-18696934 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 81

Conread position: 415-684
Cow position: chr27:4332398-4332130 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 34, 82

Conread position: 415-684
Cow position: chr27:13352624-13352891 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 72

Conread position: 419-684
Cow position: chr27:24114479-24114746 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 97, 74

Conread position: 423-684
Cow position: chr27:1905218-1904966 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 178
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 61, 0

Conread position: 423-684
Cow position: chr27:11679657-11679405 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 185
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 123, 61

Conread position: 433-683
Cow position: chr27:1520026-1520274 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 63

Conread position: 441-683
Cow position: chr27:12147290-12147050 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 105, 55

Conread position: 441-684
Cow position: chr27:15858308-15858549 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 106, 45

Conread position: 464-682
Cow position: chr27:22151669-22151878 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 84, 19

Conread position: 465-684
Cow position: chr27:22722737-22722952 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 15, 53

Conread position: 466-683
Cow position: chr27:19690972-19690758 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 83, 24

Conread position: 479-684
Cow position: chr27:1031233-1031436 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 67, 13

Conread position: 493-680
Cow position: chr27:27235756-27235938 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 55, 17

Conread position: 494-672
Cow position: chr27:29952671-29952850 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 496-684
Cow position: chr27:10003418-10003236 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 513-684
Cow position: chr27:20283391-20283218 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 516-684
Cow position: chr27:25797770-25797939 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 516-684
Cow position: chr27:26855488-26855657 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 138
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 31, 121

Conread position: 517-683
Cow position: chr27:17404436-17404269 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 536-684
Cow position: chr27:1082434-1082582 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 82

Show alignments to all cow chromosomes.