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Cow genome map

           
Conread name:
           
Ss1.1-mCP1-MI-P-CP1-nzc-k-01-0-UI.s1.3
        

               
Conread position:
               
303-601
               

               
Cow position:
               
chr5:10841341-10841044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
310-684
               

               
Cow position:
               
chr5:30581391-30581769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 146
               

               
Conread position:
               
333-633
               

               
Cow position:
               
chr5:54462643-54462348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 110
               

               
Conread position:
               
333-684
               

               
Cow position:
               
chr5:18275078-18275422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 91
               

               
Conread position:
               
335-536
               

               
Cow position:
               
chr5:75687531-75687336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
7, 89
               

               
Conread position:
               
335-598
               

               
Cow position:
               
chr5:41525461-41525207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
7, 78
               

               
Conread position:
               
335-671
               

               
Cow position:
               
chr5:72739581-72739247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 151
               

               
Conread position:
               
337-684
               

               
Cow position:
               
chr5:4352720-4353037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
337-684
               

               
Cow position:
               
chr5:5306816-5307162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
337-684
               

               
Cow position:
               
chr5:18399398-18399058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 9
               

               
Conread position:
               
337-684
               

               
Cow position:
               
chr5:27196996-27196649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 150
               

               
Conread position:
               
337-684
               

               
Cow position:
               
chr5:37379192-37379524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
338-478
               

               
Cow position:
               
chr5:280279-280421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
338-488
               

               
Cow position:
               
chr5:56541426-56541274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
338-491
               

               
Cow position:
               
chr5:414782-414622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
338-506
               

               
Cow position:
               
chr5:34525310-34525473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 107
               

               
Conread position:
               
338-507
               

               
Cow position:
               
chr5:23847031-23846862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
83, 50
               

               
Conread position:
               
338-508
               

               
Cow position:
               
chr5:9056748-9056921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
338-509
               

               
Cow position:
               
chr5:13407684-13407855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-514
               

               
Cow position:
               
chr5:41066267-41066442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-522
               

               
Cow position:
               
chr5:27063282-27063098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
81, 148
               

               
Conread position:
               
338-527
               

               
Cow position:
               
chr5:4016999-4016815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
338-530
               

               
Cow position:
               
chr5:47358808-47358996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
338-569
               

               
Cow position:
               
chr5:6528012-6528237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
83, 58
               

               
Conread position:
               
338-571
               

               
Cow position:
               
chr5:40130505-40130272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-571
               

               
Cow position:
               
chr5:48534027-48534261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
338-582
               

               
Cow position:
               
chr5:70617030-70617275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
85, 208
               

               
Conread position:
               
338-607
               

               
Cow position:
               
chr5:10774171-10773903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 13
               

               
Conread position:
               
338-607
               

               
Cow position:
               
chr5:30567361-30567630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-607
               

               
Cow position:
               
chr5:40932300-40932575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
71, 158
               

               
Conread position:
               
338-620
               

               
Cow position:
               
chr5:47202185-47201911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
338-627
               

               
Cow position:
               
chr5:28024798-28025069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
338-627
               

               
Cow position:
               
chr5:35496264-35496552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
81, 116
               

               
Conread position:
               
338-627
               

               
Cow position:
               
chr5:55682708-55682991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
210, 85
               

               
Conread position:
               
338-632
               

               
Cow position:
               
chr5:57001589-57001882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
338-633
               

               
Cow position:
               
chr5:11957389-11957086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
75, 153
               

               
Conread position:
               
338-636
               

               
Cow position:
               
chr5:14657412-14657111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
82, 7
               

               
Conread position:
               
338-639
               

               
Cow position:
               
chr5:12641356-12641054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 113
               

               
Conread position:
               
338-639
               

               
Cow position:
               
chr5:52436093-52436382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 150
               

               
Conread position:
               
338-670
               

               
Cow position:
               
chr5:43989153-43989486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
77, 157
               

               
Conread position:
               
338-671
               

               
Cow position:
               
chr5:73457253-73457586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
83, 59
               

               
Conread position:
               
338-672
               

               
Cow position:
               
chr5:24100736-24101069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 149
               

               
Conread position:
               
338-672
               

               
Cow position:
               
chr5:34219421-34219082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 144
               

               
Conread position:
               
338-672
               

               
Cow position:
               
chr5:50605250-50604919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 113
               

               
Conread position:
               
338-672
               

               
Cow position:
               
chr5:68592865-68593190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
210, 38
               

               
Conread position:
               
338-674
               

               
Cow position:
               
chr5:34191023-34191355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 95
               

               
Conread position:
               
338-675
               

               
Cow position:
               
chr5:69623663-69623988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
338-681
               

               
Cow position:
               
chr5:10514189-10513846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-681
               

               
Cow position:
               
chr5:59452270-59451942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
162, 63
               

               
Conread position:
               
338-682
               

               
Cow position:
               
chr5:46649229-46649571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
54, 153
               

               
Conread position:
               
338-682
               

               
Cow position:
               
chr5:52612276-52611948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
83, 126
               

               
Conread position:
               
338-682
               

               
Cow position:
               
chr5:70532318-70531980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:444609-444950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:3966523-3966866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:6586373-6586031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:11923041-11922696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:23685265-23684942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 78
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:23958239-23957897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:24644773-24644430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 108
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:26077115-26076770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:29031358-29031703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:34698571-34698915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:37423238-37423578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 158
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:42506847-42507189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 148
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:46791936-46792281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:50391019-50390689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
208, 90
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:54928826-54928483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 160
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:59062729-59063072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-683
               

               
Cow position:
               
chr5:59145458-59145804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:1228877-1229216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 125
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:4964283-4963943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 109
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:5105313-5105655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 131
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:5925876-5925530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:6152802-6152460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:7583902-7583577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:10097946-10097621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:10854729-10854385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 130
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:10920932-10921274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 109
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:12730625-12730279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:14544213-14543871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 72
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:18120388-18120042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:18559312-18558972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 113
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:21523727-21523374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 183
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:23668066-23667721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 150
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:25902374-25902038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:25929600-25929257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 149
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:26626118-26625773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:27004965-27005303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:27490038-27490372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 83
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:28015154-28015501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
137, 72
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:32165801-32165473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
275, 76
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:37734438-37734804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
83, 104
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:40348193-40347850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 117
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:40790944-40791281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
83, 64
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:40922594-40922269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 82
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:44710295-44709949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:45181005-45180662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 114
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:45702409-45702752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:46003552-46003210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 158
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:46627172-46626835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 86
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:46666092-46666439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 152
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:46736192-46735849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:47341810-47342146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:48226484-48226143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:49118248-49117911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:49222411-49222065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:49520802-49521149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 93
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:51167213-51166876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:51745318-51745653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 123
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:54787031-54786677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 181
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:58190669-58190324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:58198112-58198441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 108
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:58244733-58244390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 126
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:64779919-64779573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:73486836-73486490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 160
               

               
Conread position:
               
341-483
               

               
Cow position:
               
chr5:23830230-23830082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
341-537
               

               
Cow position:
               
chr5:7756376-7756572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
341-544
               

               
Cow position:
               
chr5:4683709-4683507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
80, 150
               

               
Conread position:
               
341-548
               

               
Cow position:
               
chr5:55993348-55993147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 105
               

               
Conread position:
               
341-571
               

               
Cow position:
               
chr5:32774867-32775095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
80, 106
               

               
Conread position:
               
341-632
               

               
Cow position:
               
chr5:4756087-4755800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 147
               

               
Conread position:
               
341-649
               

               
Cow position:
               
chr5:23232388-23232688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
45, 151
               

               
Conread position:
               
341-666
               

               
Cow position:
               
chr5:41927882-41927553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 249
               

               
Conread position:
               
341-667
               

               
Cow position:
               
chr5:58550088-58550404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 94
               

               
Conread position:
               
341-674
               

               
Cow position:
               
chr5:14783065-14782749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
341-682
               

               
Cow position:
               
chr5:38661422-38661762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr5:1339832-1339491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 146
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr5:11633173-11632833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 74
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr5:18703751-18704092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr5:41979597-41979915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
60, 72
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr5:47080386-47080707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
207, 60
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr5:47828229-47827891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 78
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr5:49131298-49131638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
79, 157
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr5:54695713-54695366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
69, 154
               

               
Conread position:
               
342-684
               

               
Cow position:
               
chr5:3253027-3252706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
205, 33
               

               
Conread position:
               
343-684
               

               
Cow position:
               
chr5:24152731-24153061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
344-567
               

               
Cow position:
               
chr5:49488547-49488767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
344-684
               

               
Cow position:
               
chr5:51946267-51946615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
6, 157
               

               
Conread position:
               
350-684
               

               
Cow position:
               
chr5:54621709-54622058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 156
               

               
Conread position:
               
355-670
               

               
Cow position:
               
chr5:12132705-12133010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
191, 60
               

               
Conread position:
               
358-684
               

               
Cow position:
               
chr5:3502018-3501697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 89
               

               
Conread position:
               
359-638
               

               
Cow position:
               
chr5:21117817-21118094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
62, 128
               

               
Conread position:
               
359-669
               

               
Cow position:
               
chr5:4387336-4387637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
359-669
               

               
Cow position:
               
chr5:18900088-18900394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 88
               

               
Conread position:
               
359-684
               

               
Cow position:
               
chr5:57889306-57888984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 129
               

               
Conread position:
               
360-684
               

               
Cow position:
               
chr5:18884454-18884150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 120
               

               
Conread position:
               
363-598
               

               
Cow position:
               
chr5:2916541-2916774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
58, 101
               

               
Conread position:
               
363-615
               

               
Cow position:
               
chr5:35341420-35341684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 252
               

               
Conread position:
               
363-621
               

               
Cow position:
               
chr5:54858982-54858728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 60
               

               
Conread position:
               
363-662
               

               
Cow position:
               
chr5:73443530-73443824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
363-672
               

               
Cow position:
               
chr5:46670417-46670729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
56, 89
               

               
Conread position:
               
363-684
               

               
Cow position:
               
chr5:7275943-7276264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 135
               

               
Conread position:
               
363-684
               

               
Cow position:
               
chr5:27550350-27550028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 126
               

               
Conread position:
               
363-684
               

               
Cow position:
               
chr5:31708698-31709020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
364-483
               

               
Cow position:
               
chr5:26095471-26095589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
56, 73
               

               
Conread position:
               
364-684
               

               
Cow position:
               
chr5:3788338-3788658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 132
               

               
Conread position:
               
366-651
               

               
Cow position:
               
chr5:24219280-24219562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
179, 57
               

               
Conread position:
               
366-684
               

               
Cow position:
               
chr5:7141981-7141671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
367-672
               

               
Cow position:
               
chr5:26366696-26367002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 132
               

               
Conread position:
               
370-673
               

               
Cow position:
               
chr5:43192338-43192035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
372-668
               

               
Cow position:
               
chr5:26405428-26405129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 62
               

               
Conread position:
               
373-536
               

               
Cow position:
               
chr5:64959324-64959165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 88
               

               
Conread position:
               
373-639
               

               
Cow position:
               
chr5:34298999-34299258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
42, 95
               

               
Conread position:
               
376-683
               

               
Cow position:
               
chr5:34583759-34584066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 122
               

               
Conread position:
               
377-684
               

               
Cow position:
               
chr5:27654877-27655196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
100, 155
               

               
Conread position:
               
377-684
               

               
Cow position:
               
chr5:42043041-42043337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
378-684
               

               
Cow position:
               
chr5:18249185-18249490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
379-683
               

               
Cow position:
               
chr5:28345091-28345395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 108
               

               
Conread position:
               
381-683
               

               
Cow position:
               
chr5:71622172-71621870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 117
               

               
Conread position:
               
384-681
               

               
Cow position:
               
chr5:31121068-31120780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
388-627
               

               
Cow position:
               
chr5:7996819-7996586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
388-675
               

               
Cow position:
               
chr5:76028576-76028296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
137, 41
               

               
Conread position:
               
389-673
               

               
Cow position:
               
chr5:51860781-51860509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
392-545
               

               
Cow position:
               
chr5:28223064-28222911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
398-684
               

               
Cow position:
               
chr5:31099109-31098829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
149, 31
               

               
Conread position:
               
402-684
               

               
Cow position:
               
chr5:59278296-59278576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
402-684
               

               
Cow position:
               
chr5:70401063-70401334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
414-683
               

               
Cow position:
               
chr5:58142072-58141812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
132, 19
               

               
Conread position:
               
415-684
               

               
Cow position:
               
chr5:32364950-32365200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
133, 25
               

               
Conread position:
               
415-684
               

               
Cow position:
               
chr5:48806286-48806019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
143, 81
               

               
Conread position:
               
415-684
               

               
Cow position:
               
chr5:57123686-57123947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 71
               

               
Conread position:
               
417-684
               

               
Cow position:
               
chr5:59084056-59083793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
419-684
               

               
Cow position:
               
chr5:27177814-27178078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
423-684
               

               
Cow position:
               
chr5:35988828-35988575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 16
               

               
Conread position:
               
425-683
               

               
Cow position:
               
chr5:74035708-74035964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 61
               

               
Conread position:
               
428-683
               

               
Cow position:
               
chr5:4879159-4879412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 68
               

               
Conread position:
               
430-663
               

               
Cow position:
               
chr5:58150401-58150177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
436-641
               

               
Cow position:
               
chr5:75437185-75437381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
111, 31
               

               
Conread position:
               
438-683
               

               
Cow position:
               
chr5:30156545-30156788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
108, 58
               

               
Conread position:
               
441-684
               

               
Cow position:
               
chr5:64010660-64010424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
106, 43
               

               
Conread position:
               
446-684
               

               
Cow position:
               
chr5:4602708-4602943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
102, 50
               

               
Conread position:
               
451-684
               

               
Cow position:
               
chr5:40759645-40759407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
6, 63
               

               
Conread position:
               
463-675
               

               
Cow position:
               
chr5:50832101-50832311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
464-684
               

               
Cow position:
               
chr5:63313306-63313084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
465-675
               

               
Cow position:
               
chr5:14343028-14342833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
83, 31
               

               
Conread position:
               
467-684
               

               
Cow position:
               
chr5:28861929-28861723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
15, 22
               

               
Conread position:
               
476-684
               

               
Cow position:
               
chr5:12680370-12680164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
477-684
               

               
Cow position:
               
chr5:413502-413296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
71, 19
               

               
Conread position:
               
479-661
               

               
Cow position:
               
chr5:17025897-17026077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 21
               

               
Conread position:
               
488-684
               

               
Cow position:
               
chr5:41467838-41468030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 24
               

               
Conread position:
               
489-684
               

               
Cow position:
               
chr5:12920635-12920829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
489-684
               

               
Cow position:
               
chr5:23352981-23353176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
489-684
               

               
Cow position:
               
chr5:24297126-24297314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
492-684
               

               
Cow position:
               
chr5:46778760-46778948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
496-683
               

               
Cow position:
               
chr5:444068-443881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
496-684
               

               
Cow position:
               
chr5:29433445-29433264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
505-684
               

               
Cow position:
               
chr5:6189158-6189338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
505-684
               

               
Cow position:
               
chr5:29768338-29768516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
53, 82
               

               
Conread position:
               
505-684
               

               
Cow position:
               
chr5:32756189-32756013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
43, 130
               

               
Conread position:
               
505-684
               

               
Cow position:
               
chr5:62435179-62435359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
506-684
               

               
Cow position:
               
chr5:7810273-7810095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
512-684
               

               
Cow position:
               
chr5:32953585-32953757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
37, 158
               

               
Conread position:
               
513-684
               

               
Cow position:
               
chr5:49756061-49755892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 77
               

               
Conread position:
               
519-682
               

               
Cow position:
               
chr5:9092154-9091993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 116
               

               
Conread position:
               
519-684
               

               
Cow position:
               
chr5:4349735-4349569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
527-684
               

               
Cow position:
               
chr5:4016608-4016451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 91
               

               
Conread position:
               
527-684
               

               
Cow position:
               
chr5:28948466-28948311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
528-684
               

               
Cow position:
               
chr5:9003837-9003680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
542-674
               

               
Cow position:
               
chr5:47359270-47359401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
564-684
               

               
Cow position:
               
chr5:73319957-73320077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.