Cow genome map

Conread name: Ss1.1-mE6-MI-P-E6-ahl-d-11-1-UM.s1.3

Conread position: 5-218
Cow position: chr25:24573066-24573281 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 148
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 31, 17

Conread position: 12-180
Cow position: chr25:31732313-31732147 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 151, 106

Conread position: 12-214
Cow position: chr25:19832010-19832213 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 6

Conread position: 13-164
Cow position: chr25:23779321-23779166 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 13-175
Cow position: chr25:33311317-33311142 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 88, 0

Conread position: 14-126
Cow position: chr25:34242094-34241983 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 106, 86

Conread position: 14-164
Cow position: chr25:16921787-16921626 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 84, 0

Conread position: 14-169
Cow position: chr25:7403331-7403166 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 14-175
Cow position: chr25:17724214-17724039 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 14-175
Cow position: chr25:23520018-23519856 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 104, 22

Conread position: 14-180
Cow position: chr25:14225372-14225553 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 14-180
Cow position: chr25:26065450-26065598 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 14-187
Cow position: chr25:17474502-17474321 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 85, 8

Conread position: 14-212
Cow position: chr25:433038-432830 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 85, 0

Conread position: 14-212
Cow position: chr25:11956814-11957023 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 91, 0

Conread position: 14-223
Cow position: chr25:33555617-33555834 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 91, 42

Conread position: 15-109
Cow position: chr25:5474219-5474125 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 15-159
Cow position: chr25:26112317-26112457 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 103, 62

Conread position: 15-160
Cow position: chr25:36835418-36835269 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 15-163
Cow position: chr25:13049291-13049134 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 85, 53

Conread position: 15-163
Cow position: chr25:30816900-30817058 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 15-163
Cow position: chr25:35052611-35052453 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 15-164
Cow position: chr25:6258894-6259051 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 15-164
Cow position: chr25:7277314-7277158 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 48

Conread position: 15-164
Cow position: chr25:17725055-17725202 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 22

Conread position: 15-164
Cow position: chr25:18721109-18720960 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 82, 95

Conread position: 15-164
Cow position: chr25:26136812-26136653 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 15-164
Cow position: chr25:26225018-26224869 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 107, 84

Conread position: 15-164
Cow position: chr25:36369830-36369988 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 85, 54

Conread position: 15-164
Cow position: chr25:36375521-36375679 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 85, 54

Conread position: 15-164
Cow position: chr25:40904819-40904660 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 90, 0

Conread position: 15-170
Cow position: chr25:36840408-36840558 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 15-175
Cow position: chr25:11780289-11780445 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 150, 23

Conread position: 15-175
Cow position: chr25:18201915-18201748 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 137
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 84, 22

Conread position: 15-175
Cow position: chr25:18646596-18646761 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 132
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 99, 0

Conread position: 15-175
Cow position: chr25:18760697-18760530 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 82, 104

Conread position: 15-175
Cow position: chr25:21287515-21287354 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 92, 56

Conread position: 15-180
Cow position: chr25:17704755-17704925 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 81, 93

Conread position: 15-180
Cow position: chr25:26061716-26061538 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 15-180
Cow position: chr25:26089802-26089641 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 151, 85

Conread position: 15-180
Cow position: chr25:28945031-28945202 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 15-188
Cow position: chr25:22756620-22756809 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 15-197
Cow position: chr25:18491049-18491239 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 84, 175

Conread position: 15-197
Cow position: chr25:20487427-20487233 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 179

Conread position: 15-205
Cow position: chr25:36873045-36872845 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 81, 176

Conread position: 15-206
Cow position: chr25:20085588-20085789 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 83, 177

Conread position: 15-213
Cow position: chr25:35109258-35109061 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 150, 82

Conread position: 15-218
Cow position: chr25:12305287-12305496 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 88, 156

Conread position: 15-218
Cow position: chr25:20008143-20008356 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 11, 191

Conread position: 15-227
Cow position: chr25:17918985-17919204 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 170
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 85, 145

Conread position: 15-228
Cow position: chr25:13542975-13542748 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 82, 179

Conread position: 16-164
Cow position: chr25:10791802-10791652 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 82, 60

Conread position: 16-168
Cow position: chr25:5791705-5791542 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 16-170
Cow position: chr25:7380827-7380662 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 80, 0

Conread position: 16-174
Cow position: chr25:9615849-9616018 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 0

Conread position: 16-180
Cow position: chr25:11857975-11857800 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 16-180
Cow position: chr25:30462296-30462135 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 151, 76

Conread position: 16-212
Cow position: chr25:2111061-2111253 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 145, 16

Conread position: 16-232
Cow position: chr25:1982970-1982743 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 81, 115

Conread position: 17-163
Cow position: chr25:6718233-6718088 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 102, 21

Conread position: 17-164
Cow position: chr25:7726675-7726832 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 17-164
Cow position: chr25:31514194-31514351 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 81, 0

Conread position: 17-164
Cow position: chr25:33686672-33686515 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 81, 0

Conread position: 17-168
Cow position: chr25:16064905-16065053 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 83, 0

Conread position: 17-174
Cow position: chr25:10585307-10585149 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 144, 0

Conread position: 17-175
Cow position: chr25:33101592-33101431 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 144, 0

Conread position: 17-180
Cow position: chr25:1763100-1763270 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 81, 0

Conread position: 17-180
Cow position: chr25:21893351-21893520 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 96, 0

Conread position: 17-180
Cow position: chr25:22373477-22373300 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 81, 0

Conread position: 17-180
Cow position: chr25:26072544-26072377 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 80, 15

Conread position: 17-182
Cow position: chr25:24862888-24863056 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 148, 0

Conread position: 17-200
Cow position: chr25:18551321-18551128 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 61

Conread position: 18-164
Cow position: chr25:23244988-23244837 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 18-164
Cow position: chr25:33663891-33663742 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 18-180
Cow position: chr25:5846795-5846619 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 18-180
Cow position: chr25:14513129-14513292 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 144, 81

Conread position: 18-188
Cow position: chr25:36081889-36082061 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 78, 90

Conread position: 19-163
Cow position: chr25:7005527-7005681 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 19-164
Cow position: chr25:15447511-15447660 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 19-164
Cow position: chr25:33100590-33100739 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 97, 0

Conread position: 19-164
Cow position: chr25:36155833-36155978 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 67, 52

Conread position: 19-174
Cow position: chr25:31705239-31705407 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 19-175
Cow position: chr25:35802648-35802482 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 79, 151

Conread position: 19-180
Cow position: chr25:9023766-9023931 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 58

Conread position: 19-220
Cow position: chr25:30551827-30551620 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 82

Conread position: 19-231
Cow position: chr25:7311380-7311163 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 10

Conread position: 20-175
Cow position: chr25:26087536-26087699 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 25

Conread position: 20-180
Cow position: chr25:5807961-5808134 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 81, 0

Conread position: 20-180
Cow position: chr25:17119758-17119930 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 107

Conread position: 21-231
Cow position: chr25:28662127-28662344 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 78, 102

Conread position: 22-180
Cow position: chr25:19069806-19069646 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 45

Conread position: 22-180
Cow position: chr25:31657259-31657094 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 23-164
Cow position: chr25:32745357-32745502 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 23-180
Cow position: chr25:22768237-22768404 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 80, 0

Conread position: 27-204
Cow position: chr25:13855497-13855676 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 167

Conread position: 29-226
Cow position: chr25:21547182-21547388 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 69, 104

Conread position: 30-175
Cow position: chr25:11855523-11855366 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 70, 23

Conread position: 34-164
Cow position: chr25:18877565-18877437 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 38-175
Cow position: chr25:9635364-9635500 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 121, 0

Conread position: 46-164
Cow position: chr25:18568175-18568047 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 57-185
Cow position: chr25:33111366-33111232 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 114

Show alignments to all cow chromosomes.