Cow genome map

Conread name: Ss1.1-mE6-MI-P-E6-ahl-d-11-1-UM.s1.3

Conread position: 1-164
Cow position: chrX:11454213-11454372 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 115, 11

Conread position: 2-188
Cow position: chrX:38549475-38549671 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 94, 16

Conread position: 7-168
Cow position: chrX:10237882-10237711 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 7-241
Cow position: chrX:32605037-32604799 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 175

Conread position: 8-187
Cow position: chrX:30824022-30824209 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 104, 0

Conread position: 10-200
Cow position: chrX:20678108-20677911 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 14-164
Cow position: chrX:36975990-36976150 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 14-175
Cow position: chrX:28836933-28837096 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 57, 34

Conread position: 14-180
Cow position: chrX:161451-161617 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 112, 104

Conread position: 14-180
Cow position: chrX:6559409-6559239 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 14-180
Cow position: chrX:25207816-25207644 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 104, 49

Conread position: 14-180
Cow position: chrX:35268904-35269073 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 84, 18

Conread position: 14-180
Cow position: chrX:35409791-35409969 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 143
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 86, 62

Conread position: 14-206
Cow position: chrX:13923903-13924103 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 91, 176

Conread position: 14-216
Cow position: chrX:27446725-27446935 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 84, 129

Conread position: 14-218
Cow position: chrX:43150470-43150678 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 88, 165

Conread position: 15-103
Cow position: chrX:46433531-46433619 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 15-105
Cow position: chrX:40452044-40451954 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 15-125
Cow position: chrX:20743644-20743755 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 15-126
Cow position: chrX:43730184-43730067 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 15-160
Cow position: chrX:1719155-1719302 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 101, 0

Conread position: 15-163
Cow position: chrX:27459905-27460063 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 15-164
Cow position: chrX:2314579-2314420 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 84, 0

Conread position: 15-164
Cow position: chrX:4109224-4109383 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 83, 0

Conread position: 15-164
Cow position: chrX:4403357-4403516 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 15-164
Cow position: chrX:4632818-4632656 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 135
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 20, 0

Conread position: 15-164
Cow position: chrX:4645873-4645716 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 15-164
Cow position: chrX:10516293-10516452 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 87, 0

Conread position: 15-164
Cow position: chrX:11656121-11656276 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 15-164
Cow position: chrX:16762811-16762966 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 15-164
Cow position: chrX:19203306-19203147 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 15-164
Cow position: chrX:24365781-24365624 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 85, 53

Conread position: 15-164
Cow position: chrX:25815861-25815701 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 87, 79

Conread position: 15-164
Cow position: chrX:27075011-27074853 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 15-164
Cow position: chrX:27415540-27415390 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 97, 136

Conread position: 15-164
Cow position: chrX:28878134-28877968 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 15-164
Cow position: chrX:29601788-29601631 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 15-164
Cow position: chrX:31294532-31294371 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 15-164
Cow position: chrX:31489560-31489719 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 84, 0

Conread position: 15-164
Cow position: chrX:31986534-31986374 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 15-164
Cow position: chrX:32574357-32574514 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 83, 127

Conread position: 15-164
Cow position: chrX:34398744-34398585 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 15-164
Cow position: chrX:36367895-36367736 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 15-164
Cow position: chrX:38321342-38321185 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 15-164
Cow position: chrX:41454914-41454755 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 15-164
Cow position: chrX:41810128-41809977 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 101, 0

Conread position: 15-164
Cow position: chrX:47379081-47378932 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 108, 85

Conread position: 15-168
Cow position: chrX:19018791-19018626 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 15-175
Cow position: chrX:4279078-4278907 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 15-175
Cow position: chrX:9201588-9201755 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 81, 93

Conread position: 15-175
Cow position: chrX:11633722-11633894 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 76, 0

Conread position: 15-175
Cow position: chrX:26205408-26205245 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 83, 0

Conread position: 15-175
Cow position: chrX:29544837-29544674 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 83, 148

Conread position: 15-175
Cow position: chrX:30133278-30133112 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 83, 151

Conread position: 15-175
Cow position: chrX:31436514-31436681 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 15-175
Cow position: chrX:35382996-35382830 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 82, 41

Conread position: 15-175
Cow position: chrX:35392254-35392093 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 20

Conread position: 15-175
Cow position: chrX:36722765-36722601 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 97, 0

Conread position: 15-175
Cow position: chrX:36866213-36866385 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 140
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 83, 66

Conread position: 15-175
Cow position: chrX:37749943-37749780 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 102, 26

Conread position: 15-175
Cow position: chrX:40680654-40680827 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 140
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 85, 0

Conread position: 15-175
Cow position: chrX:42247142-42246969 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 139
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 83, 0

Conread position: 15-175
Cow position: chrX:44123295-44123461 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 98, 129

Conread position: 15-175
Cow position: chrX:46072777-46072618 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 81, 93

Conread position: 15-175
Cow position: chrX:48822302-48822130 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 15-180
Cow position: chrX:30374-30548 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 88, 30

Conread position: 15-180
Cow position: chrX:876802-876630 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 35

Conread position: 15-180
Cow position: chrX:2551131-2551294 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 37, 87

Conread position: 15-180
Cow position: chrX:4091964-4092139 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 83, 0

Conread position: 15-180
Cow position: chrX:7648370-7648195 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 87, 0

Conread position: 15-180
Cow position: chrX:11781293-11781464 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 71, 0

Conread position: 15-180
Cow position: chrX:13121978-13122161 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 15-180
Cow position: chrX:20583706-20583877 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 82, 0

Conread position: 15-180
Cow position: chrX:24170689-24170508 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 83, 56

Conread position: 15-180
Cow position: chrX:25035342-25035164 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 83, 0

Conread position: 15-180
Cow position: chrX:27261231-27261407 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 28, 0

Conread position: 15-180
Cow position: chrX:34420774-34420953 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 83, 0

Conread position: 15-180
Cow position: chrX:34554763-34554941 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 15-180
Cow position: chrX:36283380-36283557 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 77, 0

Conread position: 15-180
Cow position: chrX:41027199-41027377 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 83, 0

Conread position: 15-180
Cow position: chrX:41674144-41674314 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 15-180
Cow position: chrX:41858842-41858667 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 15-180
Cow position: chrX:42331324-42331490 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 82, 0

Conread position: 15-180
Cow position: chrX:42893966-42894139 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 15-180
Cow position: chrX:45875432-45875607 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 15-180
Cow position: chrX:46587862-46588037 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 84, 131

Conread position: 15-186
Cow position: chrX:29050290-29050465 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 81, 16

Conread position: 15-186
Cow position: chrX:33654804-33654620 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 83, 0

Conread position: 15-186
Cow position: chrX:34222756-34222932 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 90, 50

Conread position: 15-186
Cow position: chrX:38094476-38094303 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 82, 16

Conread position: 15-187
Cow position: chrX:3806722-3806901 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 97, 174

Conread position: 15-187
Cow position: chrX:6407584-6407768 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 82, 36

Conread position: 15-187
Cow position: chrX:17966381-17966559 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 15-187
Cow position: chrX:31442789-31442615 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 146, 92

Conread position: 15-187
Cow position: chrX:42836221-42836405 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 144
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 83, 0

Conread position: 15-200
Cow position: chrX:13177436-13177247 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 81, 0

Conread position: 15-200
Cow position: chrX:20584368-20584548 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 81, 93

Conread position: 15-200
Cow position: chrX:24054717-24054897 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 81, 93

Conread position: 15-200
Cow position: chrX:31250428-31250620 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 83, 157

Conread position: 15-206
Cow position: chrX:12290759-12290960 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 83, 177

Conread position: 15-206
Cow position: chrX:24331816-24332018 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 82, 178

Conread position: 15-206
Cow position: chrX:32420252-32420457 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 88, 0

Conread position: 15-206
Cow position: chrX:35285213-35285418 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 83, 0

Conread position: 15-209
Cow position: chrX:17524344-17524136 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 84, 179

Conread position: 15-209
Cow position: chrX:19356509-19356708 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 38

Conread position: 15-210
Cow position: chrX:27270415-27270618 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 56, 146

Conread position: 15-212
Cow position: chrX:27705626-27705835 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 85, 144

Conread position: 15-212
Cow position: chrX:34565326-34565533 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 92, 41

Conread position: 15-212
Cow position: chrX:41878890-41878689 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 83, 22

Conread position: 15-217
Cow position: chrX:16984681-16984886 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 92, 172

Conread position: 15-218
Cow position: chrX:5876147-5876357 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 93, 129

Conread position: 15-218
Cow position: chrX:44995538-44995757 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 15-226
Cow position: chrX:46909855-46910069 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 81, 171

Conread position: 15-227
Cow position: chrX:20339852-20339631 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 171
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 83, 48

Conread position: 15-227
Cow position: chrX:20887601-20887389 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 84, 152

Conread position: 15-227
Cow position: chrX:38964148-38964362 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 150, 84

Conread position: 15-228
Cow position: chrX:7911032-7910804 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 68, 58

Conread position: 15-228
Cow position: chrX:17498362-17498581 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 87, 165

Conread position: 15-230
Cow position: chrX:12095732-12095504 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 83, 179

Conread position: 15-231
Cow position: chrX:39180193-39179968 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 85, 62

Conread position: 15-237
Cow position: chrX:14955729-14955495 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 83, 195

Conread position: 15-242
Cow position: chrX:3579984-3580232 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 88, 243

Conread position: 16-144
Cow position: chrX:24287892-24287755 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 16-157
Cow position: chrX:31252449-31252599 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 81, 55

Conread position: 16-164
Cow position: chrX:12309345-12309187 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 82, 0

Conread position: 16-164
Cow position: chrX:27416134-27416293 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 37

Conread position: 16-164
Cow position: chrX:29478765-29478920 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 82, 35

Conread position: 16-164
Cow position: chrX:34543825-34543984 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 129
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 79, 0

Conread position: 16-164
Cow position: chrX:41941664-41941821 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 82, 132

Conread position: 16-175
Cow position: chrX:8642087-8642257 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 140
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 82, 47

Conread position: 16-175
Cow position: chrX:32877334-32877167 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 89, 0

Conread position: 16-175
Cow position: chrX:37955888-37956057 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 82, 0

Conread position: 16-175
Cow position: chrX:40336952-40337123 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 82, 21

Conread position: 16-180
Cow position: chrX:23335931-23335758 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 89, 21

Conread position: 16-180
Cow position: chrX:35276026-35276203 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 82, 0

Conread position: 16-180
Cow position: chrX:35681608-35681784 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 82, 0

Conread position: 16-180
Cow position: chrX:44054843-44055020 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 83, 0

Conread position: 16-206
Cow position: chrX:20345491-20345694 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 82, 0

Conread position: 16-212
Cow position: chrX:4269024-4268822 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 14, 172

Conread position: 17-159
Cow position: chrX:46793704-46793557 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 81, 0

Conread position: 17-160
Cow position: chrX:37752064-37751917 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 81, 120

Conread position: 17-160
Cow position: chrX:38208503-38208360 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 103, 90

Conread position: 17-164
Cow position: chrX:8731136-8731292 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 81, 21

Conread position: 17-164
Cow position: chrX:14925318-14925471 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 81, 21

Conread position: 17-164
Cow position: chrX:19761796-19761947 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 17-164
Cow position: chrX:28067892-28068049 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 77, 0

Conread position: 17-164
Cow position: chrX:31729484-31729635 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 81, 0

Conread position: 17-168
Cow position: chrX:1960383-1960223 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 81, 118

Conread position: 17-174
Cow position: chrX:46068717-46068552 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 79, 0

Conread position: 17-179
Cow position: chrX:1499707-1499870 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 75, 64

Conread position: 17-180
Cow position: chrX:11326055-11325891 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 148, 64

Conread position: 17-180
Cow position: chrX:19717563-19717728 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 90, 14

Conread position: 17-180
Cow position: chrX:32910146-32910314 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 79, 50

Conread position: 17-180
Cow position: chrX:38218756-38218930 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 17-200
Cow position: chrX:42760294-42760484 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 81, 159

Conread position: 17-210
Cow position: chrX:11762959-11762771 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 79, 91

Conread position: 17-223
Cow position: chrX:4328141-4327922 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 87, 0

Conread position: 17-227
Cow position: chrX:15545924-15546144 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 82, 175

Conread position: 17-227
Cow position: chrX:42449972-42449750 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 81, 216

Conread position: 17-236
Cow position: chrX:17956733-17956955 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 80, 35

Conread position: 18-164
Cow position: chrX:1360132-1360280 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 18-164
Cow position: chrX:34270604-34270759 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 76, 127

Conread position: 18-175
Cow position: chrX:16763882-16763718 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 82, 0

Conread position: 18-175
Cow position: chrX:32747775-32747934 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 78, 90

Conread position: 18-175
Cow position: chrX:34314067-34314233 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 18-180
Cow position: chrX:20168601-20168772 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 81, 0

Conread position: 18-180
Cow position: chrX:21327956-21328131 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 18-180
Cow position: chrX:33466661-33466839 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 18-206
Cow position: chrX:27431875-27431681 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 18-206
Cow position: chrX:27442496-27442296 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 76, 176

Conread position: 18-217
Cow position: chrX:34837021-34836819 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 78, 166

Conread position: 18-218
Cow position: chrX:7178939-7179137 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 61

Conread position: 18-231
Cow position: chrX:35885684-35885467 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 80, 169

Conread position: 19-164
Cow position: chrX:597430-597280 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 81, 45

Conread position: 19-164
Cow position: chrX:33000949-33001096 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 19-168
Cow position: chrX:28850771-28850920 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 79, 18

Conread position: 19-180
Cow position: chrX:23497643-23497480 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 88, 13

Conread position: 19-206
Cow position: chrX:42875256-42875451 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 77, 170

Conread position: 19-227
Cow position: chrX:44225687-44225467 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 79, 193

Conread position: 20-164
Cow position: chrX:41790384-41790229 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 20-175
Cow position: chrX:1101602-1101762 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 129
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 85, 0

Conread position: 20-180
Cow position: chrX:11781496-11781661 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 148

Conread position: 20-180
Cow position: chrX:43008654-43008827 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 20-218
Cow position: chrX:18196062-18196254 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 145, 5

Conread position: 21-164
Cow position: chrX:11653816-11653965 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 21-164
Cow position: chrX:30840592-30840739 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 23-164
Cow position: chrX:41166777-41166631 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 23-180
Cow position: chrX:47100549-47100377 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 24-174
Cow position: chrX:25925593-25925445 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 143, 83

Conread position: 25-234
Cow position: chrX:12800-13014 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 71, 38

Conread position: 26-175
Cow position: chrX:41010949-41011102 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 27-158
Cow position: chrX:40543469-40543336 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 80, 68

Conread position: 27-187
Cow position: chrX:42432456-42432290 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 26

Conread position: 27-234
Cow position: chrX:4169979-4169764 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 28-206
Cow position: chrX:51848-51660 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 75, 164

Conread position: 29-164
Cow position: chrX:27175052-27175198 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 30-180
Cow position: chrX:28106902-28107063 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 31-180
Cow position: chrX:5063301-5063453 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 32-164
Cow position: chrX:20881886-20881763 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 32-180
Cow position: chrX:17525810-17525660 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 76

Conread position: 34-180
Cow position: chrX:26882021-26881862 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 34-251
Cow position: chrX:1938072-1938300 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 5, 159

Conread position: 41-206
Cow position: chrX:4559799-4559977 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 45-187
Cow position: chrX:39094252-39094109 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 60, 36

Show alignments to all cow chromosomes.