Cow genome map

Conread name: Ss1.1-mH3-MI-P-H3-aat-g-02-1-UM.s1.3

Conread position: 612-948
Cow position: chr26:4854797-4854443 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 253
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 110, 12

Conread position: 623-940
Cow position: chr26:26950216-26950534 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 220
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 68

Conread position: 627-945
Cow position: chr26:34314918-34314597 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 85, 53

Conread position: 628-944
Cow position: chr26:23141863-23142194 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 224
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 27, 82

Conread position: 630-948
Cow position: chr26:6475222-6475526 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 220
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 98, 25

Conread position: 632-929
Cow position: chr26:23623808-23624119 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 38, 144

Conread position: 632-945
Cow position: chr26:6794382-6794058 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 238
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 52

Conread position: 632-948
Cow position: chr26:33253084-33253415 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 89, 18

Conread position: 632-948
Cow position: chr26:34108978-34108667 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 207
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 86, 128

Conread position: 638-891
Cow position: chr26:27304637-27304376 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 18, 130

Conread position: 639-936
Cow position: chr26:12893205-12893509 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 218
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 86, 14

Conread position: 639-945
Cow position: chr26:19459924-19459593 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 242
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 139

Conread position: 639-945
Cow position: chr26:34060563-34060241 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 222
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 88, 235

Conread position: 639-948
Cow position: chr26:22249264-22249574 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 118, 15

Conread position: 640-824
Cow position: chr26:13018176-13018361 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 89, 122

Conread position: 640-870
Cow position: chr26:16112979-16113206 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 20

Conread position: 641-868
Cow position: chr26:6714073-6714316 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 76, 132

Conread position: 641-902
Cow position: chr26:34106599-34106353 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 643-923
Cow position: chr26:33475923-33475624 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 209
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 71, 252

Conread position: 643-946
Cow position: chr26:14481342-14481642 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 199
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 22, 120

Conread position: 644-860
Cow position: chr26:7224131-7224350 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 170
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 80, 118

Conread position: 644-866
Cow position: chr26:1325964-1325743 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 90, 39

Conread position: 644-885
Cow position: chr26:9099311-9099561 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 190
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 83, 213

Conread position: 644-946
Cow position: chr26:35449278-35448966 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 89, 36

Conread position: 644-948
Cow position: chr26:4807780-4807466 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 233
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 75, 137

Conread position: 644-948
Cow position: chr26:21636829-21637129 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 198
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 91, 116

Conread position: 645-948
Cow position: chr26:798087-798393 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 87, 9

Conread position: 646-912
Cow position: chr26:4421302-4421557 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 157, 37

Conread position: 648-948
Cow position: chr26:31633949-31633633 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 77, 6

Conread position: 651-851
Cow position: chr26:22304177-22304378 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 110

Conread position: 651-948
Cow position: chr26:23096977-23097273 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 75, 119

Conread position: 654-912
Cow position: chr26:2986878-2987132 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 182
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 58, 211

Conread position: 655-922
Cow position: chr26:19111105-19110845 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 178
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 149, 66

Conread position: 655-935
Cow position: chr26:33011469-33011746 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 194
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 59, 109

Conread position: 655-946
Cow position: chr26:15212003-15211711 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 198
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 72, 108

Conread position: 655-947
Cow position: chr26:9604767-9604464 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 213
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 32, 113

Conread position: 655-948
Cow position: chr26:14905605-14905907 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 209
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 78, 111

Conread position: 655-948
Cow position: chr26:21243298-21243006 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 67, 111

Conread position: 656-948
Cow position: chr26:20551340-20551045 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 202
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 71, 101

Conread position: 657-941
Cow position: chr26:21860012-21859736 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 190
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 86, 57

Conread position: 657-944
Cow position: chr26:25526456-25526155 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 219
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 72, 115

Conread position: 657-948
Cow position: chr26:32897670-32897967 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 196
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 67, 220

Conread position: 664-840
Cow position: chr26:7962119-7961952 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 664-939
Cow position: chr26:35704576-35704303 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 181
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 136, 61

Conread position: 664-946
Cow position: chr26:17057877-17057589 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 56, 106

Conread position: 664-948
Cow position: chr26:14950944-14951242 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 206
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 54, 18

Conread position: 664-948
Cow position: chr26:33045269-33044986 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 53, 43

Conread position: 667-948
Cow position: chr26:22348811-22349102 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 213
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 47, 109

Conread position: 678-855
Cow position: chr26:18381497-18381311 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 49, 92

Conread position: 688-948
Cow position: chr26:13828242-13827977 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 45, 144

Conread position: 689-887
Cow position: chr26:5985661-5985845 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 717-948
Cow position: chr26:15200383-15200609 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 122, 28

Conread position: 724-948
Cow position: chr26:30568536-30568753 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 81, 35

Conread position: 725-884
Cow position: chr26:34580928-34580775 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 725-941
Cow position: chr26:4167228-4167445 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 80, 33

Conread position: 725-946
Cow position: chr26:8353095-8352867 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 80, 34

Conread position: 727-946
Cow position: chr26:8643064-8642851 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 190, 6

Conread position: 728-934
Cow position: chr26:35686516-35686316 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 75, 31

Conread position: 728-941
Cow position: chr26:4371763-4371557 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 189, 14

Conread position: 728-948
Cow position: chr26:10965471-10965685 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 77, 31

Conread position: 732-862
Cow position: chr26:7157487-7157616 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 27

Conread position: 732-863
Cow position: chr26:28374324-28374454 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 77, 27

Conread position: 732-897
Cow position: chr26:25074836-25074677 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 73, 27

Conread position: 732-897
Cow position: chr26:32830199-32830042 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 73, 27

Conread position: 732-902
Cow position: chr26:6865143-6864970 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 73, 24

Conread position: 732-902
Cow position: chr26:24453791-24453952 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 732-943
Cow position: chr26:829924-829714 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 70, 27

Conread position: 732-944
Cow position: chr26:16550107-16549893 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 57, 24

Conread position: 732-944
Cow position: chr26:23671535-23671322 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 73, 23

Conread position: 732-947
Cow position: chr26:11538651-11538442 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 73, 27

Conread position: 732-947
Cow position: chr26:26294077-26294291 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 73, 27

Conread position: 732-948
Cow position: chr26:7314989-7315198 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 37, 27

Conread position: 732-948
Cow position: chr26:9104162-9104375 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 27

Conread position: 732-948
Cow position: chr26:19774180-19774397 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 77, 27

Conread position: 732-948
Cow position: chr26:32601469-32601258 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 24

Conread position: 732-948
Cow position: chr26:32834460-32834669 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 73, 27

Conread position: 733-865
Cow position: chr26:32655490-32655622 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 27

Conread position: 733-866
Cow position: chr26:11672415-11672283 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 72, 26

Conread position: 733-936
Cow position: chr26:3706909-3706711 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 69, 26

Conread position: 733-945
Cow position: chr26:4363417-4363212 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 69, 15

Conread position: 733-945
Cow position: chr26:32836357-32836148 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 69, 26

Conread position: 733-946
Cow position: chr26:10764330-10764127 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 72, 26

Conread position: 733-948
Cow position: chr26:12237911-12238118 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 26

Conread position: 734-944
Cow position: chr26:10974247-10974024 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 126, 25

Conread position: 734-945
Cow position: chr26:13818541-13818331 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 55, 22

Conread position: 734-945
Cow position: chr26:33857078-33857285 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 28

Conread position: 734-948
Cow position: chr26:22354532-22354318 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 23

Conread position: 738-927
Cow position: chr26:8202966-8202781 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 33, 21

Conread position: 744-941
Cow position: chr26:11134584-11134784 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 14

Conread position: 744-945
Cow position: chr26:32683223-32683026 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 61, 15

Conread position: 748-948
Cow position: chr26:22152333-22152131 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 111

Conread position: 749-933
Cow position: chr26:8699945-8700124 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 10

Conread position: 749-940
Cow position: chr26:32815689-32815880 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 56, 11

Conread position: 749-941
Cow position: chr26:25299701-25299512 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 10

Conread position: 749-941
Cow position: chr26:32670394-32670580 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 56, 10

Conread position: 760-936
Cow position: chr26:22602945-22603119 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 45, 103

Conread position: 760-941
Cow position: chr26:586787-586964 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 21

Conread position: 765-902
Cow position: chr26:21992190-21992057 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 105

Conread position: 809-946
Cow position: chr26:31779525-31779389 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 111, 60

Show alignments to all cow chromosomes.