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Cow genome map

           
Conread name:
           
Ss1.1-mH3-MI-P-H3-aat-g-02-1-UM.s1.3
        

               
Conread position:
               
589-948
               

               
Cow position:
               
chr9:7409548-7409919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
618-944
               

               
Cow position:
               
chr9:33668545-33668872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
84, 34
               

               
Conread position:
               
627-945
               

               
Cow position:
               
chr9:31346755-31347094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
99, 150
               

               
Conread position:
               
627-945
               

               
Cow position:
               
chr9:35375267-35375566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
628-882
               

               
Cow position:
               
chr9:44584408-44584670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
628-948
               

               
Cow position:
               
chr9:5327069-5327397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 248
               

               
Conread position:
               
629-817
               

               
Cow position:
               
chr9:52649038-52648846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
104, 132
               

               
Conread position:
               
629-832
               

               
Cow position:
               
chr9:48808954-48809164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
27, 81
               

               
Conread position:
               
629-855
               

               
Cow position:
               
chr9:39135810-39135579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
90, 10
               

               
Conread position:
               
629-941
               

               
Cow position:
               
chr9:10650480-10650173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
97, 56
               

               
Conread position:
               
629-948
               

               
Cow position:
               
chr9:8998161-8998498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
98, 67
               

               
Conread position:
               
632-867
               

               
Cow position:
               
chr9:48016801-48017042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
632-945
               

               
Cow position:
               
chr9:8901414-8901085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
632-946
               

               
Cow position:
               
chr9:44822511-44822170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
91, 141
               

               
Conread position:
               
633-948
               

               
Cow position:
               
chr9:13670445-13670774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 142
               

               
Conread position:
               
633-948
               

               
Cow position:
               
chr9:47500390-47500068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 133
               

               
Conread position:
               
635-890
               

               
Cow position:
               
chr9:7806136-7805883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
636-922
               

               
Cow position:
               
chr9:26102543-26102834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 180
               

               
Conread position:
               
636-948
               

               
Cow position:
               
chr9:20579773-20579464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
94, 133
               

               
Conread position:
               
636-948
               

               
Cow position:
               
chr9:30477957-30477639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 223
               

               
Conread position:
               
637-861
               

               
Cow position:
               
chr9:14738068-14738304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
89, 135
               

               
Conread position:
               
638-945
               

               
Cow position:
               
chr9:1867288-1867588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
88, 45
               

               
Conread position:
               
638-948
               

               
Cow position:
               
chr9:20322276-20321964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 137
               

               
Conread position:
               
639-842
               

               
Cow position:
               
chr9:29792384-29792190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
144, 80
               

               
Conread position:
               
639-864
               

               
Cow position:
               
chr9:40303317-40303075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
639-865
               

               
Cow position:
               
chr9:33347665-33347431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 126
               

               
Conread position:
               
639-867
               

               
Cow position:
               
chr9:28156517-28156754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
639-867
               

               
Cow position:
               
chr9:39315686-39315908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
94, 20
               

               
Conread position:
               
639-868
               

               
Cow position:
               
chr9:5757157-5756927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
639-872
               

               
Cow position:
               
chr9:42586730-42586490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
87, 128
               

               
Conread position:
               
639-902
               

               
Cow position:
               
chr9:35832798-35832524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
639-939
               

               
Cow position:
               
chr9:34697484-34697173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 139
               

               
Conread position:
               
639-943
               

               
Cow position:
               
chr9:4629928-4630241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
639-944
               

               
Cow position:
               
chr9:5456353-5456040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
639-945
               

               
Cow position:
               
chr9:32676495-32676818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
73, 41
               

               
Conread position:
               
639-948
               

               
Cow position:
               
chr9:6839808-6840143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
30, 139
               

               
Conread position:
               
639-948
               

               
Cow position:
               
chr9:40215066-40215383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 9
               

               
Conread position:
               
639-948
               

               
Cow position:
               
chr9:54681339-54681646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
640-944
               

               
Cow position:
               
chr9:35028350-35028031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 139
               

               
Conread position:
               
640-944
               

               
Cow position:
               
chr9:44709650-44709962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 30
               

               
Conread position:
               
640-945
               

               
Cow position:
               
chr9:11123661-11123344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 132
               

               
Conread position:
               
640-946
               

               
Cow position:
               
chr9:1370754-1371071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 42
               

               
Conread position:
               
641-897
               

               
Cow position:
               
chr9:5110676-5110946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
71, 136
               

               
Conread position:
               
641-941
               

               
Cow position:
               
chr9:17799456-17799764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
641-948
               

               
Cow position:
               
chr9:20090878-20091183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
642-944
               

               
Cow position:
               
chr9:6852229-6851931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
101, 12
               

               
Conread position:
               
643-855
               

               
Cow position:
               
chr9:16121352-16121572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
83, 125
               

               
Conread position:
               
644-843
               

               
Cow position:
               
chr9:26559773-26559575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
10, 78
               

               
Conread position:
               
644-912
               

               
Cow position:
               
chr9:35547088-35547373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 241
               

               
Conread position:
               
644-924
               

               
Cow position:
               
chr9:9311682-9311973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
87, 130
               

               
Conread position:
               
644-944
               

               
Cow position:
               
chr9:20901295-20900987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
81, 232
               

               
Conread position:
               
644-947
               

               
Cow position:
               
chr9:5433468-5433778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 100
               

               
Conread position:
               
644-948
               

               
Cow position:
               
chr9:11168568-11168871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 48
               

               
Conread position:
               
644-948
               

               
Cow position:
               
chr9:22318184-22318488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
75, 108
               

               
Conread position:
               
644-948
               

               
Cow position:
               
chr9:34283779-34284089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
81, 15
               

               
Conread position:
               
644-948
               

               
Cow position:
               
chr9:52406993-52407308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
87, 41
               

               
Conread position:
               
645-855
               

               
Cow position:
               
chr9:25375909-25375687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
645-863
               

               
Cow position:
               
chr9:52763929-52763703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
645-864
               

               
Cow position:
               
chr9:8992355-8992121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
75, 130
               

               
Conread position:
               
645-866
               

               
Cow position:
               
chr9:63785085-63784854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
73, 125
               

               
Conread position:
               
645-942
               

               
Cow position:
               
chr9:62724366-62724672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
71, 169
               

               
Conread position:
               
645-945
               

               
Cow position:
               
chr9:15215866-15215547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 133
               

               
Conread position:
               
645-948
               

               
Cow position:
               
chr9:55321478-55321779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
161, 63
               

               
Conread position:
               
646-868
               

               
Cow position:
               
chr9:42264046-42264276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
71, 120
               

               
Conread position:
               
646-922
               

               
Cow position:
               
chr9:5209427-5209692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
159, 43
               

               
Conread position:
               
646-938
               

               
Cow position:
               
chr9:34410568-34410264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
83, 126
               

               
Conread position:
               
646-944
               

               
Cow position:
               
chr9:25546482-25546775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 93
               

               
Conread position:
               
646-948
               

               
Cow position:
               
chr9:12280798-12281109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 127
               

               
Conread position:
               
646-948
               

               
Cow position:
               
chr9:41789127-41789425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
91, 34
               

               
Conread position:
               
647-847
               

               
Cow position:
               
chr9:61847290-61847088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 116
               

               
Conread position:
               
648-844
               

               
Cow position:
               
chr9:11271516-11271317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
648-865
               

               
Cow position:
               
chr9:45749259-45749500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
648-948
               

               
Cow position:
               
chr9:26057602-26057300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
77, 37
               

               
Conread position:
               
650-865
               

               
Cow position:
               
chr9:9689352-9689560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
153, 35
               

               
Conread position:
               
650-892
               

               
Cow position:
               
chr9:41785050-41785293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 224
               

               
Conread position:
               
650-940
               

               
Cow position:
               
chr9:50607101-50606815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 111
               

               
Conread position:
               
650-948
               

               
Cow position:
               
chr9:5227331-5227029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 170
               

               
Conread position:
               
651-882
               

               
Cow position:
               
chr9:34484420-34484674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
651-897
               

               
Cow position:
               
chr9:4539010-4538770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
154, 72
               

               
Conread position:
               
651-897
               

               
Cow position:
               
chr9:38289464-38289238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
651-941
               

               
Cow position:
               
chr9:5398984-5399268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
66, 78
               

               
Conread position:
               
651-948
               

               
Cow position:
               
chr9:3387546-3387832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
99, 59
               

               
Conread position:
               
651-948
               

               
Cow position:
               
chr9:28947716-28947994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
286, 55
               

               
Conread position:
               
654-817
               

               
Cow position:
               
chr9:34917344-34917174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 113
               

               
Conread position:
               
654-853
               

               
Cow position:
               
chr9:9316302-9316501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 75
               

               
Conread position:
               
655-860
               

               
Cow position:
               
chr9:27347652-27347850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
66, 97
               

               
Conread position:
               
655-893
               

               
Cow position:
               
chr9:64105737-64105989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
655-923
               

               
Cow position:
               
chr9:4861230-4861499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
655-948
               

               
Cow position:
               
chr9:26403629-26403926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
67, 110
               

               
Conread position:
               
655-948
               

               
Cow position:
               
chr9:51721053-51720761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 66
               

               
Conread position:
               
656-945
               

               
Cow position:
               
chr9:22152247-22151944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
59, 116
               

               
Conread position:
               
656-948
               

               
Cow position:
               
chr9:30402594-30402279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
51, 123
               

               
Conread position:
               
659-864
               

               
Cow position:
               
chr9:32115743-32115543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
6, 76
               

               
Conread position:
               
661-945
               

               
Cow position:
               
chr9:8723635-8723932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
67, 163
               

               
Conread position:
               
664-851
               

               
Cow position:
               
chr9:60355357-60355167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 99
               

               
Conread position:
               
664-865
               

               
Cow position:
               
chr9:41964889-41964676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
63, 32
               

               
Conread position:
               
664-869
               

               
Cow position:
               
chr9:34973857-34973649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
54, 95
               

               
Conread position:
               
664-902
               

               
Cow position:
               
chr9:25400344-25400105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
70, 52
               

               
Conread position:
               
664-945
               

               
Cow position:
               
chr9:22443780-22443489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
65, 107
               

               
Conread position:
               
665-945
               

               
Cow position:
               
chr9:55288045-55287759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
60, 79
               

               
Conread position:
               
665-948
               

               
Cow position:
               
chr9:34468715-34468442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
82, 50
               

               
Conread position:
               
668-914
               

               
Cow position:
               
chr9:55438585-55438321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
59, 105
               

               
Conread position:
               
668-931
               

               
Cow position:
               
chr9:19902939-19903200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
668-948
               

               
Cow position:
               
chr9:29185293-29184991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
57, 110
               

               
Conread position:
               
670-875
               

               
Cow position:
               
chr9:20637224-20637439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
60, 104
               

               
Conread position:
               
670-903
               

               
Cow position:
               
chr9:33838459-33838218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
61, 100
               

               
Conread position:
               
672-865
               

               
Cow position:
               
chr9:58369142-58368938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 100
               

               
Conread position:
               
680-864
               

               
Cow position:
               
chr9:4580533-4580346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
9, 83
               

               
Conread position:
               
687-948
               

               
Cow position:
               
chr9:15806039-15805784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
118, 35
               

               
Conread position:
               
688-941
               

               
Cow position:
               
chr9:41513504-41513757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
688-945
               

               
Cow position:
               
chr9:56011370-56011631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
34, 83
               

               
Conread position:
               
688-946
               

               
Cow position:
               
chr9:43870853-43871118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
690-948
               

               
Cow position:
               
chr9:10010702-10010943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 32
               

               
Conread position:
               
691-941
               

               
Cow position:
               
chr9:44396550-44396794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
696-948
               

               
Cow position:
               
chr9:48107236-48106977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
35, 176
               

               
Conread position:
               
705-941
               

               
Cow position:
               
chr9:24872735-24872966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 55
               

               
Conread position:
               
712-912
               

               
Cow position:
               
chr9:55532719-55532916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
23, 49
               

               
Conread position:
               
719-945
               

               
Cow position:
               
chr9:41394733-41394516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
721-941
               

               
Cow position:
               
chr9:36445536-36445758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
721-945
               

               
Cow position:
               
chr9:5509640-5509860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
85, 38
               

               
Conread position:
               
722-895
               

               
Cow position:
               
chr9:19493548-19493379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
722-945
               

               
Cow position:
               
chr9:59386851-59386637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
723-946
               

               
Cow position:
               
chr9:26310424-26310642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
725-878
               

               
Cow position:
               
chr9:623275-623423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
725-932
               

               
Cow position:
               
chr9:28378888-28379090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
77, 34
               

               
Conread position:
               
725-945
               

               
Cow position:
               
chr9:8534770-8534552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
725-948
               

               
Cow position:
               
chr9:17310641-17310421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
192, 15
               

               
Conread position:
               
728-855
               

               
Cow position:
               
chr9:25628008-25628133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
74, 28
               

               
Conread position:
               
728-865
               

               
Cow position:
               
chr9:28392102-28391966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
728-902
               

               
Cow position:
               
chr9:5164061-5163893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
728-945
               

               
Cow position:
               
chr9:51566571-51566356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
77, 9
               

               
Conread position:
               
728-948
               

               
Cow position:
               
chr9:5763708-5763492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
193, 31
               

               
Conread position:
               
728-948
               

               
Cow position:
               
chr9:19714004-19714216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
728-948
               

               
Cow position:
               
chr9:26477139-26477357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
730-875
               

               
Cow position:
               
chr9:55495061-55494919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
731-945
               

               
Cow position:
               
chr9:49416913-49417125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
75, 28
               

               
Conread position:
               
732-860
               

               
Cow position:
               
chr9:14974992-14974865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
732-864
               

               
Cow position:
               
chr9:5665993-5666125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-866
               

               
Cow position:
               
chr9:47214618-47214485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
732-889
               

               
Cow position:
               
chr9:43342258-43342409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-896
               

               
Cow position:
               
chr9:33541982-33542142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
67, 27
               

               
Conread position:
               
732-896
               

               
Cow position:
               
chr9:41781581-41781740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-897
               

               
Cow position:
               
chr9:1751264-1751424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
732-902
               

               
Cow position:
               
chr9:8288545-8288709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
732-903
               

               
Cow position:
               
chr9:42478555-42478389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 27
               

               
Conread position:
               
732-912
               

               
Cow position:
               
chr9:45171296-45171117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-914
               

               
Cow position:
               
chr9:18828127-18827951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-914
               

               
Cow position:
               
chr9:52754923-52754753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
732-922
               

               
Cow position:
               
chr9:38645417-38645231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
732-934
               

               
Cow position:
               
chr9:54528441-54528635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
732-939
               

               
Cow position:
               
chr9:13744003-13743800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-940
               

               
Cow position:
               
chr9:50075991-50076191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
179, 27
               

               
Conread position:
               
732-941
               

               
Cow position:
               
chr9:9723949-9723753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
732-941
               

               
Cow position:
               
chr9:41282942-41283148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-942
               

               
Cow position:
               
chr9:55084374-55084162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-944
               

               
Cow position:
               
chr9:1729747-1729540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-944
               

               
Cow position:
               
chr9:5245780-5245993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
732-944
               

               
Cow position:
               
chr9:26435130-26434923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-944
               

               
Cow position:
               
chr9:27279236-27279446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
732-944
               

               
Cow position:
               
chr9:30652782-30652567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-944
               

               
Cow position:
               
chr9:32670020-32669810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-944
               

               
Cow position:
               
chr9:37677821-37678021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
184, 27
               

               
Conread position:
               
732-944
               

               
Cow position:
               
chr9:39681266-39681477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
732-945
               

               
Cow position:
               
chr9:3774092-3774299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
184, 27
               

               
Conread position:
               
732-945
               

               
Cow position:
               
chr9:18425839-18426055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 26
               

               
Conread position:
               
732-945
               

               
Cow position:
               
chr9:21888097-21888305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-945
               

               
Cow position:
               
chr9:52839953-52839748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-946
               

               
Cow position:
               
chr9:33114273-33114486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 27
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:1972875-1973083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
185, 27
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:5594430-5594641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:6934146-6933933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:7362955-7363164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
182, 27
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:9815340-9815556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:11319707-11319492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:16300642-16300425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:17518562-17518349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:22696150-22696362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:28354444-28354660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:35105863-35105649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:35167103-35167313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:42446056-42445838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
732-948
               

               
Cow position:
               
chr9:64050634-64050419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
733-863
               

               
Cow position:
               
chr9:32348886-32348756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
733-897
               

               
Cow position:
               
chr9:24652332-24652498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
733-914
               

               
Cow position:
               
chr9:42062027-42062205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
733-922
               

               
Cow position:
               
chr9:23264922-23265105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
733-938
               

               
Cow position:
               
chr9:17411265-17411060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
733-944
               

               
Cow position:
               
chr9:52513521-52513315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
733-948
               

               
Cow position:
               
chr9:12226049-12225842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
733-948
               

               
Cow position:
               
chr9:45756291-45756502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
734-864
               

               
Cow position:
               
chr9:22434000-22433871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
734-944
               

               
Cow position:
               
chr9:9753462-9753256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
735-940
               

               
Cow position:
               
chr9:29684074-29684281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
736-946
               

               
Cow position:
               
chr9:23788370-23788572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
67, 23
               

               
Conread position:
               
741-902
               

               
Cow position:
               
chr9:13761035-13761194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
741-948
               

               
Cow position:
               
chr9:4646389-4646186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
744-897
               

               
Cow position:
               
chr9:3343688-3343835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
744-912
               

               
Cow position:
               
chr9:40776737-40776899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
744-944
               

               
Cow position:
               
chr9:55889753-55889942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
748-948
               

               
Cow position:
               
chr9:1520800-1520596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
7, 123
               

               
Conread position:
               
748-948
               

               
Cow position:
               
chr9:50543488-50543281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 128
               

               
Conread position:
               
749-936
               

               
Cow position:
               
chr9:9552034-9552222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
749-945
               

               
Cow position:
               
chr9:18217155-18216965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
760-919
               

               
Cow position:
               
chr9:23797189-23797344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 110
               

               
Conread position:
               
760-936
               

               
Cow position:
               
chr9:20416553-20416381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
157, 45
               

               
Conread position:
               
760-941
               

               
Cow position:
               
chr9:11304122-11303947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
157, 43
               

               
Conread position:
               
760-945
               

               
Cow position:
               
chr9:9461704-9461517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 73
               

               
Conread position:
               
760-947
               

               
Cow position:
               
chr9:25921776-25921968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
760-948
               

               
Cow position:
               
chr9:11313557-11313370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
42, 98
               

               
Conread position:
               
760-948
               

               
Cow position:
               
chr9:47906329-47906139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
761-932
               

               
Cow position:
               
chr9:50125640-50125472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
44, 107
               

               
Conread position:
               
761-948
               

               
Cow position:
               
chr9:17928711-17928901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
44, 97
               

               
Conread position:
               
774-948
               

               
Cow position:
               
chr9:35849871-35850041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
31, 96
               

               
Conread position:
               
775-941
               

               
Cow position:
               
chr9:6089056-6089226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
776-945
               

               
Cow position:
               
chr9:33697000-33697167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 26
               

               
Conread position:
               
777-948
               

               
Cow position:
               
chr9:38343860-38344032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
140, 25
               

               
Conread position:
               
779-945
               

               
Cow position:
               
chr9:6225482-6225315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
779-948
               

               
Cow position:
               
chr9:9416423-9416263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
782-945
               

               
Cow position:
               
chr9:35591986-35592145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
783-948
               

               
Cow position:
               
chr9:1952294-1952127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 87
               

               
Conread position:
               
803-944
               

               
Cow position:
               
chr9:35360107-35359971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
810-948
               

               
Cow position:
               
chr9:10092390-10092251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 52
               

               
Conread position:
               
811-948
               

               
Cow position:
               
chr9:29091797-29091936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
97, 58
               
Show alignments to all cow chromosomes.