Cow genome map
| Conread name: | Ss1.1-nep17c_h12.5 |
| Conread position: | 1-429 |
| Cow position: | chr23:852067-851639 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 228 |
| Conread position: | 1-455 |
| Cow position: | chr23:876553-876087 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 228 |
| Conread position: | 1-496 |
| Cow position: | chr23:859784-859276 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 228 |
| Conread position: | 1-496 |
| Cow position: | chr23:882445-881967 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 485, 127 |
| Conread position: | 1-496 |
| Cow position: | chr23:889413-888910 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 306 |
| Conread position: | 5-564 |
| Cow position: | chr23:813925-813380 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 225 |
| Conread position: | 7-564 |
| Cow position: | chr23:865217-864664 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 246 |
| Conread position: | 9-275 |
| Cow position: | chr23:801111-800845 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 252, 262 |
| Conread position: | 11-496 |
| Cow position: | chr23:823677-823179 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 391 |
| Conread position: | 11-513 |
| Cow position: | chr23:775798-776279 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 12-546 |
| Cow position: | chr23:851918-851375 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 13-454 |
| Cow position: | chr23:838220-837767 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 250 |
| Conread position: | 14-275 |
| Cow position: | chr23:788997-788745 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 14-429 |
| Cow position: | chr23:838114-837717 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 86 |
| Conread position: | 14-564 |
| Cow position: | chr23:823569-823007 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 86 |
| Conread position: | 14-564 |
| Cow position: | chr23:859666-859104 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 86 |
| Conread position: | 14-564 |
| Cow position: | chr23:876435-875903 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 47 |
| Conread position: | 14-564 |
| Cow position: | chr23:889295-888738 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 86 |
| Conread position: | 18-184 |
| Cow position: | chr23:882071-881905 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-332 |
| Cow position: | chr23:856466-856140 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 91, 150 |
| Conread position: | 18-540 |
| Cow position: | chr23:837975-837459 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 98 |
| Conread position: | 23-511 |
| Cow position: | chr23:781776-782270 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 143, 33 |
| Conread position: | 28-564 |
| Cow position: | chr23:882343-881795 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 5 |
| Conread position: | 30-382 |
| Cow position: | chr23:856496-856150 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 136, 29 |
| Conread position: | 30-444 |
| Cow position: | chr23:781654-782068 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 216, 29 |
| Conread position: | 30-508 |
| Cow position: | chr23:781825-782297 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 307 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 61-382 |
| Cow position: | chr23:789055-788743 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 76-464 |
| Cow position: | chr23:782111-782491 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 79, 33 |
| Conread position: | 91-334 |
| Cow position: | chr23:801089-800846 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 195, 190 |
| Conread position: | 103-455 |
| Cow position: | chr23:856456-856110 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 105-455 |
| Cow position: | chr23:789026-788703 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 119-340 |
| Cow position: | chr23:801076-800854 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 75 |
| Conread position: | 120-564 |
| Cow position: | chr23:856496-856043 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 129-364 |
| Cow position: | chr23:801081-800846 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 138-554 |
| Cow position: | chr23:789053-788646 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 84 |
| Conread position: | 165-384 |
| Cow position: | chr23:801075-800856 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 174-410 |
| Cow position: | chr23:801081-800845 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 187, 182 |
| Conread position: | 179-564 |
| Cow position: | chr23:801123-800736 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 203-511 |
| Cow position: | chr23:852063-851749 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 226-490 |
| Cow position: | chr23:781655-781907 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 251, 41 |
| Conread position: | 227-508 |
| Cow position: | chr23:838144-837857 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 230-504 |
| Cow position: | chr23:838229-837951 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 289-564 |
| Cow position: | chr23:785076-784805 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 54, 60 |
Show alignments to all cow chromosomes.