Cow genome map
| Conread name: | Ss1.1-nep34c_d2.5 |
| Conread position: | 1-461 |
| Cow position: | chr26:26236825-26236355 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 113, 104 |
| Conread position: | 1-482 |
| Cow position: | chr26:26187386-26186917 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 154 |
| Conread position: | 1-492 |
| Cow position: | chr26:26176691-26176203 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 76 |
| Conread position: | 2-364 |
| Cow position: | chr26:26220078-26219712 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 138 |
| Conread position: | 2-387 |
| Cow position: | chr26:26213622-26213211 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 332 |
| Conread position: | 2-393 |
| Cow position: | chr26:26204589-26204210 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 154 |
| Conread position: | 2-452 |
| Cow position: | chr26:26163150-26162694 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 109 |
| Conread position: | 2-457 |
| Cow position: | chr26:26236764-26236288 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 109 |
| Conread position: | 2-461 |
| Cow position: | chr26:26193515-26193056 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 156 |
| Conread position: | 2-482 |
| Cow position: | chr26:26193545-26193056 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 66 |
| Conread position: | 3-483 |
| Cow position: | chr26:26163242-26162774 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 69 |
| Conread position: | 3-492 |
| Cow position: | chr26:26213915-26213401 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 72 |
| Conread position: | 3-492 |
| Cow position: | chr26:26247759-26247246 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 298 |
| Conread position: | 6-398 |
| Cow position: | chr26:26163113-26162725 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 102 |
| Conread position: | 6-482 |
| Cow position: | chr26:26220245-26219747 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 6-491 |
| Cow position: | chr26:26236634-26236118 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 229 |
| Conread position: | 6-492 |
| Cow position: | chr26:26204444-26203979 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 132 |
| Conread position: | 33-461 |
| Cow position: | chr26:26220341-26219891 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 86 |
| Conread position: | 33-483 |
| Cow position: | chr26:26163242-26162795 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 80 |
| Conread position: | 33-491 |
| Cow position: | chr26:26193574-26193122 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 75 |
| Conread position: | 38-482 |
| Cow position: | chr26:26193383-26192942 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 39-482 |
| Cow position: | chr26:26213711-26213248 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 51-482 |
| Cow position: | chr26:26187258-26186833 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 89-492 |
| Cow position: | chr26:26247475-26247054 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 46 |
| Conread position: | 96-299 |
| Cow position: | chr26:26176407-26176195 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 107-393 |
| Cow position: | chr26:26204463-26204180 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 106, 6 |
| Conread position: | 128-482 |
| Cow position: | chr26:26204382-26204031 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 131-277 |
| Cow position: | chr26:26204583-26204437 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 133 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 131-482 |
| Cow position: | chr26:26176654-26176297 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 108 |
| Conread position: | 131-482 |
| Cow position: | chr26:26187349-26186980 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 156-387 |
| Cow position: | chr26:26193118-26192884 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 123 |
| Conread position: | 156-387 |
| Cow position: | chr26:26204204-26203973 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 120 |
| Conread position: | 156-492 |
| Cow position: | chr26:26193238-26192890 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 102 |
| Conread position: | 252-449 |
| Cow position: | chr26:26204615-26204418 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-482 |
| Cow position: | chr26:26193539-26193308 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 275-461 |
| Cow position: | chr26:26187388-26187202 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 27, 19 |
Show alignments to all cow chromosomes.