Cow genome map

Conread name: Ss1.1-nep34c_n6.5

Conread position: 1-260
Cow position: chr5:20009329-20009064 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 18, 0

Conread position: 1-260
Cow position: chr5:20195064-20194808 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-260
Cow position: chr5:20303670-20303405 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 180
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 63, 117

Conread position: 1-261
Cow position: chr5:20285139-20284858 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 212
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 13, 0

Conread position: 3-260
Cow position: chr5:20136870-20136601 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 50, 0

Conread position: 15-260
Cow position: chr5:20233582-20233334 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 17, 59

Conread position: 18-260
Cow position: chr5:19990462-19990217 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 167
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 22-273
Cow position: chr5:20216931-20216673 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 66, 0

Conread position: 25-260
Cow position: chr5:20026575-20026337 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 87, 0

Conread position: 108-260
Cow position: chr5:19903165-19903013 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 108-260
Cow position: chr5:19974487-19974335 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 108-261
Cow position: chr5:20264362-20264209 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 109-258
Cow position: chr5:20062700-20062551 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 109-258
Cow position: chr5:20323040-20322891 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 109-265
Cow position: chr5:20080120-20079964 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 109-270
Cow position: chr5:20123780-20123618 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 153, 0

Conread position: 218-460
Cow position: chr5:19902522-19902280 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 160
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 35, 26

Conread position: 238-472
Cow position: chr5:20079394-20079160 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 159
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 152, 144

Conread position: 254-472
Cow position: chr5:19889019-19888807 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 63, 69

Conread position: 254-472
Cow position: chr5:20025781-20025563 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 127, 135

Conread position: 254-472
Cow position: chr5:20060092-20059874 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 136, 128

Conread position: 254-472
Cow position: chr5:20211232-20211014 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 125, 135

Conread position: 254-473
Cow position: chr5:20193743-20193524 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 254-475
Cow position: chr5:20301779-20301558 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 134, 118

Conread position: 254-479
Cow position: chr5:20101335-20101110 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 151
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 136, 128

Conread position: 254-479
Cow position: chr5:20122385-20122160 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 63, 79

Conread position: 254-483
Cow position: chr5:20135335-20135106 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 125, 134

Conread position: 530-628
Cow position: chr5:20192787-20192689 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 599-792
Cow position: chr5:20058431-20058240 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 31, 16

Conread position: 605-792
Cow position: chr5:20077620-20077437 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 150
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 8, 0

Conread position: 608-792
Cow position: chr5:20192543-20192355 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 614-792
Cow position: chr5:20333274-20333095 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 628-792
Cow position: chr5:19988384-19988220 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 138
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 628-792
Cow position: chr5:20007174-20007010 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 139
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 628-792
Cow position: chr5:20024144-20023980 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 628-792
Cow position: chr5:20119804-20119640 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 628-792
Cow position: chr5:20208185-20208021 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 628-792
Cow position: chr5:20229345-20229181 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 628-792
Cow position: chr5:20282299-20282135 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 136
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 628-792
Cow position: chr5:20299439-20299275 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 135
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 628-792
Cow position: chr5:20316185-20316021 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 136
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 628-805
Cow position: chr5:20260137-20259960 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 628-808
Cow position: chr5:20097217-20097036 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 165, 0

Conread position: 628-811
Cow position: chr5:19882983-19882802 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 166, 0

Conread position: 636-792
Cow position: chr5:19900040-19899884 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 638-802
Cow position: chr5:20375997-20375834 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 156, 0

Conread position: 668-792
Cow position: chr5:20133075-20132951 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 791-918
Cow position: chr5:20192225-20192098 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 119
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 916-1140
Cow position: chr5:20191547-20191323 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 916-1140
Cow position: chr5:20281293-20281069 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 19, 25

Conread position: 925-1140
Cow position: chr5:20314751-20314535 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 5, 0

Conread position: 929-1140
Cow position: chr5:19570239-19570028 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 929-1140
Cow position: chr5:20023266-20023055 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 929-1140
Cow position: chr5:20074385-20074174 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 929-1140
Cow position: chr5:20093844-20093633 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 929-1140
Cow position: chr5:20116532-20116321 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 929-1140
Cow position: chr5:20259093-20258882 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 940-1140
Cow position: chr5:19881449-19881249 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 945-1140
Cow position: chr5:19818655-19818850 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 945-1140
Cow position: chr5:19897651-19897456 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 945-1151
Cow position: chr5:20298336-20298131 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 161
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 197, 0

Conread position: 946-1133
Cow position: chr5:19830925-19830738 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 946-1140
Cow position: chr5:19849110-19848916 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 946-1140
Cow position: chr5:19986820-19986626 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 155
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 946-1140
Cow position: chr5:20005618-20005424 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 158
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 946-1140
Cow position: chr5:20057280-20057086 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 946-1140
Cow position: chr5:20131436-20131242 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 946-1148
Cow position: chr5:20374661-20374458 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 159
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 196, 0

Conread position: 946-1149
Cow position: chr5:20227342-20227139 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 159
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 946-1167
Cow position: chr5:20330303-20330080 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 79, 73

Conread position: 949-1122
Cow position: chr5:19679046-19679214 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 92, 115

Conread position: 949-1133
Cow position: chr5:19755747-19755563 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 147
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 949-1133
Cow position: chr5:19772130-19772314 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 150
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 949-1133
Cow position: chr5:19784691-19784507 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 146
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 949-1133
Cow position: chr5:19864114-19863930 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 147
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 949-1157
Cow position: chr5:19690107-19690312 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 185, 0

Conread position: 982-1140
Cow position: chr5:19746407-19746565 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1002-1154
Cow position: chr5:24472601-24472752 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 140, 0

Conread position: 1175-2005
Cow position: chr5:20190458-20189675 (view UCSC Genome Browser custom track)
Alignm length: 839
Alignm identity: 669
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 120

Show alignments to all cow chromosomes.