Cow genome map
Conread name: | Ss1.1-nep34c_n6.5 |
Conread position: | 1-260 |
Cow position: | chr5:20009329-20009064 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 179 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 1-260 |
Cow position: | chr5:20195064-20194808 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 1-260 |
Cow position: | chr5:20303670-20303405 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 180 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 63, 117 |
Conread position: | 1-261 |
Cow position: | chr5:20285139-20284858 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 212 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 13, 0 |
Conread position: | 3-260 |
Cow position: | chr5:20136870-20136601 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 196 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 15-260 |
Cow position: | chr5:20233582-20233334 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 187 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 17, 59 |
Conread position: | 18-260 |
Cow position: | chr5:19990462-19990217 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 167 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 94, 0 |
Conread position: | 22-273 |
Cow position: | chr5:20216931-20216673 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 178 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 66, 0 |
Conread position: | 25-260 |
Cow position: | chr5:20026575-20026337 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 163 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 108-260 |
Cow position: | chr5:19903165-19903013 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 115 |
Alignm E-value: | 9e-27 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 108-260 |
Cow position: | chr5:19974487-19974335 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 113 |
Alignm E-value: | 8e-25 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 108-261 |
Cow position: | chr5:20264362-20264209 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 121 |
Alignm E-value: | 5e-32 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 109-258 |
Cow position: | chr5:20062700-20062551 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 113 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 109-258 |
Cow position: | chr5:20323040-20322891 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 109 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 109-265 |
Cow position: | chr5:20080120-20079964 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 116 |
Alignm E-value: | 8e-26 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 109-270 |
Cow position: | chr5:20123780-20123618 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 126 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 153, 0 |
Conread position: | 218-460 |
Cow position: | chr5:19902522-19902280 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 160 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 35, 26 |
Conread position: | 238-472 |
Cow position: | chr5:20079394-20079160 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 159 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 152, 144 |
Conread position: | 254-472 |
Cow position: | chr5:19889019-19888807 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 153 |
Alignm E-value: | 6e-23 |
Alignm gaps (pig, cow): | 63, 69 |
Conread position: | 254-472 |
Cow position: | chr5:20025781-20025563 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 145 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 127, 135 |
Conread position: | 254-472 |
Cow position: | chr5:20060092-20059874 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 153 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 136, 128 |
Conread position: | 254-472 |
Cow position: | chr5:20211232-20211014 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 155 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 125, 135 |
Conread position: | 254-473 |
Cow position: | chr5:20193743-20193524 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 254-475 |
Cow position: | chr5:20301779-20301558 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 152 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 134, 118 |
Conread position: | 254-479 |
Cow position: | chr5:20101335-20101110 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 151 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 136, 128 |
Conread position: | 254-479 |
Cow position: | chr5:20122385-20122160 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 157 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 63, 79 |
Conread position: | 254-483 |
Cow position: | chr5:20135335-20135106 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 161 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 125, 134 |
Conread position: | 530-628 |
Cow position: | chr5:20192787-20192689 (view UCSC Genome Browser custom track) |
Alignm length: | 99 |
Alignm identity: | 82 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 599-792 |
Cow position: | chr5:20058431-20058240 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 152 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 31, 16 |
Conread position: | 605-792 |
Cow position: | chr5:20077620-20077437 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 150 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 8, 0 |
Conread position: | 608-792 |
Cow position: | chr5:20192543-20192355 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 169 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 0 |
Conread position: | 614-792 |
Cow position: | chr5:20333274-20333095 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 125 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 628-792 |
Cow position: | chr5:19988384-19988220 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 138 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 628-792 |
Cow position: | chr5:20007174-20007010 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 139 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 628-792 |
Cow position: | chr5:20024144-20023980 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 121 |
Alignm E-value: | 9e-27 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 628-792 |
Cow position: | chr5:20119804-20119640 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 132 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 628-792 |
Cow position: | chr5:20208185-20208021 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 131 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 628-792 |
Cow position: | chr5:20229345-20229181 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 129 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 628-792 |
Cow position: | chr5:20282299-20282135 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 136 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 628-792 |
Cow position: | chr5:20299439-20299275 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 135 |
Alignm E-value: | 4.00001e-40 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 628-792 |
Cow position: | chr5:20316185-20316021 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 136 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 628-805 |
Cow position: | chr5:20260137-20259960 (view UCSC Genome Browser custom track) |
Alignm length: | 178 |
Alignm identity: | 135 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 628-808 |
Cow position: | chr5:20097217-20097036 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 140 |
Alignm E-value: | 8e-36 |
Alignm gaps (pig, cow): | 165, 0 |
Conread position: | 628-811 |
Cow position: | chr5:19882983-19882802 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 133 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 166, 0 |
Conread position: | 636-792 |
Cow position: | chr5:19900040-19899884 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 118 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 638-802 |
Cow position: | chr5:20375997-20375834 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 124 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 156, 0 |
Conread position: | 668-792 |
Cow position: | chr5:20133075-20132951 (view UCSC Genome Browser custom track) |
Alignm length: | 125 |
Alignm identity: | 102 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 791-918 |
Cow position: | chr5:20192225-20192098 (view UCSC Genome Browser custom track) |
Alignm length: | 128 |
Alignm identity: | 119 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 916-1140 |
Cow position: | chr5:20191547-20191323 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 916-1140 |
Cow position: | chr5:20281293-20281069 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 171 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 19, 25 |
Conread position: | 925-1140 |
Cow position: | chr5:20314751-20314535 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 164 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 929-1140 |
Cow position: | chr5:19570239-19570028 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 155 |
Alignm E-value: | 9e-37 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 929-1140 |
Cow position: | chr5:20023266-20023055 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 171 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 929-1140 |
Cow position: | chr5:20074385-20074174 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 161 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 929-1140 |
Cow position: | chr5:20093844-20093633 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 163 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 929-1140 |
Cow position: | chr5:20116532-20116321 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 161 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 929-1140 |
Cow position: | chr5:20259093-20258882 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 161 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 940-1140 |
Cow position: | chr5:19881449-19881249 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 164 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 945-1140 |
Cow position: | chr5:19818655-19818850 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 155 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 945-1140 |
Cow position: | chr5:19897651-19897456 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 159 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 945-1151 |
Cow position: | chr5:20298336-20298131 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 161 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 197, 0 |
Conread position: | 946-1133 |
Cow position: | chr5:19830925-19830738 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 145 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 946-1140 |
Cow position: | chr5:19849110-19848916 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 144 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 946-1140 |
Cow position: | chr5:19986820-19986626 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 155 |
Alignm E-value: | 7.00649e-45 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 946-1140 |
Cow position: | chr5:20005618-20005424 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 158 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 946-1140 |
Cow position: | chr5:20057280-20057086 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 149 |
Alignm E-value: | 4e-39 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 946-1140 |
Cow position: | chr5:20131436-20131242 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 165 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 946-1148 |
Cow position: | chr5:20374661-20374458 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 159 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 196, 0 |
Conread position: | 946-1149 |
Cow position: | chr5:20227342-20227139 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 159 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 946-1167 |
Cow position: | chr5:20330303-20330080 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 169 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 79, 73 |
Conread position: | 949-1122 |
Cow position: | chr5:19679046-19679214 (view UCSC Genome Browser custom track) |
Alignm length: | 175 |
Alignm identity: | 127 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 92, 115 |
Conread position: | 949-1133 |
Cow position: | chr5:19755747-19755563 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 147 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 949-1133 |
Cow position: | chr5:19772130-19772314 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 150 |
Alignm E-value: | 7.00649e-45 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 949-1133 |
Cow position: | chr5:19784691-19784507 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 146 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 949-1133 |
Cow position: | chr5:19864114-19863930 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 147 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 949-1157 |
Cow position: | chr5:19690107-19690312 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 156 |
Alignm E-value: | 9e-37 |
Alignm gaps (pig, cow): | 185, 0 |
Conread position: | 982-1140 |
Cow position: | chr5:19746407-19746565 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 120 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1002-1154 |
Cow position: | chr5:24472601-24472752 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 110 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 140, 0 |
Conread position: | 1175-2005 |
Cow position: | chr5:20190458-20189675 (view UCSC Genome Browser custom track) |
Alignm length: | 839 |
Alignm identity: | 669 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 120 |
Show alignments to all cow chromosomes.