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Cow genome map

           
Conread name:
           
Ss1.1-pigcb_1823.5
        

               
Conread position:
               
164-384
               

               
Cow position:
               
chr11:36647069-36647284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
174-680
               

               
Cow position:
               
chr11:27746632-27747131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
177-460
               

               
Cow position:
               
chr11:71455505-71455787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
12, 152
               

               
Conread position:
               
178-414
               

               
Cow position:
               
chr11:70617562-70617801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
178-682
               

               
Cow position:
               
chr11:29916260-29916758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 11
               

               
Conread position:
               
179-318
               

               
Cow position:
               
chr11:28843175-28843316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
179-641
               

               
Cow position:
               
chr11:58103054-58102586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
19, 149
               

               
Conread position:
               
180-330
               

               
Cow position:
               
chr11:17891711-17891862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
180-454
               

               
Cow position:
               
chr11:49105781-49106046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
146, 32
               

               
Conread position:
               
180-665
               

               
Cow position:
               
chr11:47351075-47351531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
181-674
               

               
Cow position:
               
chr11:19247472-19246998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 97
               

               
Conread position:
               
182-368
               

               
Cow position:
               
chr11:6620567-6620380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
182-597
               

               
Cow position:
               
chr11:63482701-63482299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
182-619
               

               
Cow position:
               
chr11:40458845-40459260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 109
               

               
Conread position:
               
182-622
               

               
Cow position:
               
chr11:51756043-51756453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
182-652
               

               
Cow position:
               
chr11:31525587-31526063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
182-682
               

               
Cow position:
               
chr11:58990233-58990722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
7, 102
               

               
Conread position:
               
183-579
               

               
Cow position:
               
chr11:77128395-77128774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
231, 10
               

               
Conread position:
               
184-350
               

               
Cow position:
               
chr11:9234353-9234517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
5, 100
               

               
Conread position:
               
184-614
               

               
Cow position:
               
chr11:24601696-24602105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 145
               

               
Conread position:
               
185-330
               

               
Cow position:
               
chr11:30952791-30952645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
185-611
               

               
Cow position:
               
chr11:70836639-70836235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
115, 10
               

               
Conread position:
               
186-468
               

               
Cow position:
               
chr11:17968847-17968579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
238, 83
               

               
Conread position:
               
186-652
               

               
Cow position:
               
chr11:41426642-41427109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
337, 83
               

               
Conread position:
               
187-399
               

               
Cow position:
               
chr11:34412826-34413034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
187-400
               

               
Cow position:
               
chr11:84891022-84890813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
187-451
               

               
Cow position:
               
chr11:25319780-25320042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
214, 138
               

               
Conread position:
               
187-680
               

               
Cow position:
               
chr11:11125392-11125876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
190-452
               

               
Cow position:
               
chr11:62045131-62045383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
190-677
               

               
Cow position:
               
chr11:36194025-36194499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 72
               

               
Conread position:
               
191-557
               

               
Cow position:
               
chr11:36986695-36987041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
191-577
               

               
Cow position:
               
chr11:70838569-70838178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
127, 101
               

               
Conread position:
               
192-299
               

               
Cow position:
               
chr11:59959244-59959137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 20
               

               
Conread position:
               
192-365
               

               
Cow position:
               
chr11:6639246-6639412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
147, 20
               

               
Conread position:
               
192-397
               

               
Cow position:
               
chr11:31437264-31437060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
111, 136
               

               
Conread position:
               
192-399
               

               
Cow position:
               
chr11:39057373-39057564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
192-412
               

               
Cow position:
               
chr11:53719680-53719892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
192-436
               

               
Cow position:
               
chr11:34121491-34121737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 139
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr11:1485626-1485378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
136, 149
               

               
Conread position:
               
192-504
               

               
Cow position:
               
chr11:16910632-16910320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
270, 135
               

               
Conread position:
               
192-543
               

               
Cow position:
               
chr11:50236234-50235899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
192-649
               

               
Cow position:
               
chr11:4323101-4323546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 100
               

               
Conread position:
               
192-652
               

               
Cow position:
               
chr11:3719986-3720438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 160
               

               
Conread position:
               
192-666
               

               
Cow position:
               
chr11:55333643-55334116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 133
               

               
Conread position:
               
192-672
               

               
Cow position:
               
chr11:8495772-8496240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
454, 22
               

               
Conread position:
               
192-681
               

               
Cow position:
               
chr11:21549230-21549690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
437, 89
               

               
Conread position:
               
193-371
               

               
Cow position:
               
chr11:37118220-37118397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
193-400
               

               
Cow position:
               
chr11:71309793-71309591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
193-521
               

               
Cow position:
               
chr11:27939222-27939539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
213, 84
               

               
Conread position:
               
193-566
               

               
Cow position:
               
chr11:30354803-30355159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
217, 19
               

               
Conread position:
               
193-573
               

               
Cow position:
               
chr11:20601975-20602334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
233, 78
               

               
Conread position:
               
193-603
               

               
Cow position:
               
chr11:7924853-7924458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 19
               

               
Conread position:
               
193-676
               

               
Cow position:
               
chr11:49211095-49210612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 146
               

               
Conread position:
               
194-490
               

               
Cow position:
               
chr11:2309610-2309898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
277, 74
               

               
Conread position:
               
194-503
               

               
Cow position:
               
chr11:67747021-67747322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
194-541
               

               
Cow position:
               
chr11:81162694-81162357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
222, 18
               

               
Conread position:
               
194-565
               

               
Cow position:
               
chr11:30934162-30934516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
251, 39
               

               
Conread position:
               
194-565
               

               
Cow position:
               
chr11:42358861-42359219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
227, 97
               

               
Conread position:
               
194-647
               

               
Cow position:
               
chr11:75177625-75178076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
137, 97
               

               
Conread position:
               
194-664
               

               
Cow position:
               
chr11:78381310-78380874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 71
               

               
Conread position:
               
194-666
               

               
Cow position:
               
chr11:2917840-2917395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 15
               

               
Conread position:
               
194-674
               

               
Cow position:
               
chr11:59463899-59463435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
433, 98
               

               
Conread position:
               
194-676
               

               
Cow position:
               
chr11:66897067-66896589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 69
               

               
Conread position:
               
194-676
               

               
Cow position:
               
chr11:70303819-70304278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
349, 16
               

               
Conread position:
               
195-555
               

               
Cow position:
               
chr11:49935005-49934641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
195-570
               

               
Cow position:
               
chr11:36799558-36799203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
195-629
               

               
Cow position:
               
chr11:30879416-30879830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
10, 133
               

               
Conread position:
               
195-669
               

               
Cow position:
               
chr11:52297486-52297025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
195-672
               

               
Cow position:
               
chr11:54856372-54856811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
196-584
               

               
Cow position:
               
chr11:3233818-3234192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
9, 131
               

               
Conread position:
               
197-326
               

               
Cow position:
               
chr11:10545729-10545858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-333
               

               
Cow position:
               
chr11:56751645-56751512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-342
               

               
Cow position:
               
chr11:80520708-80520854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
57, 68
               

               
Conread position:
               
197-352
               

               
Cow position:
               
chr11:40608981-40608829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
197-368
               

               
Cow position:
               
chr11:55117212-55117387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
197-371
               

               
Cow position:
               
chr11:35238568-35238742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-373
               

               
Cow position:
               
chr11:62376697-62376526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-374
               

               
Cow position:
               
chr11:2281547-2281378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
197-398
               

               
Cow position:
               
chr11:7315387-7315192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
197-399
               

               
Cow position:
               
chr11:25336815-25337012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
197-399
               

               
Cow position:
               
chr11:55348002-55348203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
154, 128
               

               
Conread position:
               
197-401
               

               
Cow position:
               
chr11:46473946-46473743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
128, 152
               

               
Conread position:
               
197-412
               

               
Cow position:
               
chr11:35276040-35276248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
197-412
               

               
Cow position:
               
chr11:41577265-41577065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
183, 12
               

               
Conread position:
               
197-412
               

               
Cow position:
               
chr11:57111568-57111359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
137, 15
               

               
Conread position:
               
197-421
               

               
Cow position:
               
chr11:77207788-77208004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
197-437
               

               
Cow position:
               
chr11:62750010-62749784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
147, 16
               

               
Conread position:
               
197-439
               

               
Cow position:
               
chr11:81066842-81066613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
197-447
               

               
Cow position:
               
chr11:43913962-43914197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
197-447
               

               
Cow position:
               
chr11:71846609-71846364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
219, 127
               

               
Conread position:
               
197-447
               

               
Cow position:
               
chr11:75748175-75748416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-453
               

               
Cow position:
               
chr11:59370754-59371002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
215, 103
               

               
Conread position:
               
197-457
               

               
Cow position:
               
chr11:65857597-65857852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
118, 72
               

               
Conread position:
               
197-458
               

               
Cow position:
               
chr11:12555678-12555411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
131, 10
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr11:10875762-10876024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
205, 129
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr11:32431876-32432136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
197-461
               

               
Cow position:
               
chr11:3175119-3175378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
234, 11
               

               
Conread position:
               
197-466
               

               
Cow position:
               
chr11:30110711-30110963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
156, 12
               

               
Conread position:
               
197-467
               

               
Cow position:
               
chr11:85764691-85764937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
197-468
               

               
Cow position:
               
chr11:67951221-67950969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-469
               

               
Cow position:
               
chr11:17112887-17112626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
129, 79
               

               
Conread position:
               
197-471
               

               
Cow position:
               
chr11:41239532-41239263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
204, 15
               

               
Conread position:
               
197-474
               

               
Cow position:
               
chr11:3303576-3303830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
197-474
               

               
Cow position:
               
chr11:53130552-53130822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
222, 15
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chr11:7333982-7333710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 80
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chr11:48697187-48697458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chr11:48932843-48932577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chr11:51044197-51043918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
56, 68
               

               
Conread position:
               
197-479
               

               
Cow position:
               
chr11:37068563-37068303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
197-479
               

               
Cow position:
               
chr11:37347214-37347492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
153, 47
               

               
Conread position:
               
197-479
               

               
Cow position:
               
chr11:38810611-38810335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
150, 128
               

               
Conread position:
               
197-479
               

               
Cow position:
               
chr11:50197705-50197419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
112, 150
               

               
Conread position:
               
197-479
               

               
Cow position:
               
chr11:83196239-83196511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-484
               

               
Cow position:
               
chr11:9837358-9837080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
16, 71
               

               
Conread position:
               
197-494
               

               
Cow position:
               
chr11:44642546-44642256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
237, 72
               

               
Conread position:
               
197-494
               

               
Cow position:
               
chr11:81174630-81174913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-497
               

               
Cow position:
               
chr11:6154152-6154440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
162, 17
               

               
Conread position:
               
197-500
               

               
Cow position:
               
chr11:10076514-10076803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
197-503
               

               
Cow position:
               
chr11:8827519-8827817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
142, 84
               

               
Conread position:
               
197-503
               

               
Cow position:
               
chr11:62490173-62490476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
211, 95
               

               
Conread position:
               
197-507
               

               
Cow position:
               
chr11:18210609-18210307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
182, 132
               

               
Conread position:
               
197-512
               

               
Cow position:
               
chr11:43646678-43646365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
197-512
               

               
Cow position:
               
chr11:50951290-50951604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
135, 148
               

               
Conread position:
               
197-512
               

               
Cow position:
               
chr11:56821516-56821196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
197-521
               

               
Cow position:
               
chr11:24937402-24937721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
220, 15
               

               
Conread position:
               
197-521
               

               
Cow position:
               
chr11:71168838-71168534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
197-530
               

               
Cow position:
               
chr11:32377927-32378252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
226, 80
               

               
Conread position:
               
197-533
               

               
Cow position:
               
chr11:10620586-10620260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
221, 113
               

               
Conread position:
               
197-533
               

               
Cow position:
               
chr11:70273041-70273374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 16
               

               
Conread position:
               
197-544
               

               
Cow position:
               
chr11:51144457-51144793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 77
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chr11:8564235-8563883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
206, 129
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chr11:16226445-16226780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chr11:18526153-18525817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chr11:73774467-73774812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
328, 202
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chr11:84724391-84724734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 25
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chr11:7415106-7414789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chr11:8428234-8428598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
130, 100
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chr11:11232715-11232369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
13, 69
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chr11:31352831-31352465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
203, 12
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chr11:45898316-45897963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 36
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chr11:50778109-50778454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
13, 132
               

               
Conread position:
               
197-553
               

               
Cow position:
               
chr11:3833608-3833276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
197-553
               

               
Cow position:
               
chr11:63469623-63469963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
197-553
               

               
Cow position:
               
chr11:80820259-80819917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
146, 104
               

               
Conread position:
               
197-554
               

               
Cow position:
               
chr11:64638784-64638437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
124, 67
               

               
Conread position:
               
197-559
               

               
Cow position:
               
chr11:41809737-41809399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chr11:11752779-11752422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chr11:12111728-12111364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
155, 99
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chr11:22499611-22499272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
229, 16
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chr11:23232774-23232425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
201, 95
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chr11:56518573-56518217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
118, 130
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chr11:58588083-58588439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 132
               

               
Conread position:
               
197-563
               

               
Cow position:
               
chr11:18572543-18572898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
56, 62
               

               
Conread position:
               
197-563
               

               
Cow position:
               
chr11:23128800-23128442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 95
               

               
Conread position:
               
197-563
               

               
Cow position:
               
chr11:26483459-26483803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-564
               

               
Cow position:
               
chr11:8841001-8840657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
57, 70
               

               
Conread position:
               
197-564
               

               
Cow position:
               
chr11:80761640-80761279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 62
               

               
Conread position:
               
197-565
               

               
Cow position:
               
chr11:1362741-1362368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 131
               

               
Conread position:
               
197-565
               

               
Cow position:
               
chr11:34032456-34032099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 12
               

               
Conread position:
               
197-565
               

               
Cow position:
               
chr11:76114394-76114742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 78
               

               
Conread position:
               
197-566
               

               
Cow position:
               
chr11:47544867-47545237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
215, 128
               

               
Conread position:
               
197-566
               

               
Cow position:
               
chr11:64090347-64089997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
230, 127
               

               
Conread position:
               
197-569
               

               
Cow position:
               
chr11:38638862-38639215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
197-570
               

               
Cow position:
               
chr11:17278922-17278571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-571
               

               
Cow position:
               
chr11:29947187-29946807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 85
               

               
Conread position:
               
197-571
               

               
Cow position:
               
chr11:43897877-43898244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
197-571
               

               
Cow position:
               
chr11:53147800-53147426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
197-571
               

               
Cow position:
               
chr11:65409418-65409051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
224, 129
               

               
Conread position:
               
197-572
               

               
Cow position:
               
chr11:44036455-44036828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
153, 128
               

               
Conread position:
               
197-572
               

               
Cow position:
               
chr11:56654288-56654662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
223, 15
               

               
Conread position:
               
197-574
               

               
Cow position:
               
chr11:18588841-18588477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
197-576
               

               
Cow position:
               
chr11:5032037-5031668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr11:40921-41292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
215, 33
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr11:3393471-3393097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
216, 59
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr11:34830040-34829673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr11:34962802-34963184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
115, 15
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr11:37974665-37975046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
108, 74
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr11:59872666-59873040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr11:69119039-69119407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
358, 128
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr11:23138321-23137939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr11:33341406-33341030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
358, 47
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr11:33754160-33753796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
351, 82
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr11:44575997-44575639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr11:48271934-48272314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 131
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr11:54334074-54334442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
76, 63
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr11:70609527-70609912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
182, 75
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr11:73924819-73924447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
76, 57
               

               
Conread position:
               
197-580
               

               
Cow position:
               
chr11:28643821-28644202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
122, 58
               

               
Conread position:
               
197-585
               

               
Cow position:
               
chr11:45632025-45631645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
217, 131
               

               
Conread position:
               
197-585
               

               
Cow position:
               
chr11:62155370-62155758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 12
               

               
Conread position:
               
197-589
               

               
Cow position:
               
chr11:80530110-80530481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
197-591
               

               
Cow position:
               
chr11:44637021-44636631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 70
               

               
Conread position:
               
197-605
               

               
Cow position:
               
chr11:41812172-41811776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
197-606
               

               
Cow position:
               
chr11:33413973-33414375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 111
               

               
Conread position:
               
197-609
               

               
Cow position:
               
chr11:18244202-18243805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
355, 130
               

               
Conread position:
               
197-615
               

               
Cow position:
               
chr11:30475739-30476150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
197-617
               

               
Cow position:
               
chr11:71868864-71868455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 82
               

               
Conread position:
               
197-622
               

               
Cow position:
               
chr11:45646851-45646440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
226, 12
               

               
Conread position:
               
197-623
               

               
Cow position:
               
chr11:68207096-68206692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
197-625
               

               
Cow position:
               
chr11:59902630-59903048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-627
               

               
Cow position:
               
chr11:35363235-35363655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
356, 15
               

               
Conread position:
               
197-627
               

               
Cow position:
               
chr11:61202902-61203324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 155
               

               
Conread position:
               
197-628
               

               
Cow position:
               
chr11:33349962-33349543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 0
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chr11:3780685-3780255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 147
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chr11:4674711-4674284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 129
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chr11:32198680-32199103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
269, 15
               

               
Conread position:
               
197-639
               

               
Cow position:
               
chr11:85723441-85723864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
197-640
               

               
Cow position:
               
chr11:36981307-36981736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 92
               

               
Conread position:
               
197-640
               

               
Cow position:
               
chr11:60302218-60301806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
197-641
               

               
Cow position:
               
chr11:48474448-48474881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 48
               

               
Conread position:
               
197-641
               

               
Cow position:
               
chr11:77705504-77705922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
197-642
               

               
Cow position:
               
chr11:70459314-70459730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
197-646
               

               
Cow position:
               
chr11:17036812-17036355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
129, 15
               

               
Conread position:
               
197-646
               

               
Cow position:
               
chr11:43361061-43360610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
197-646
               

               
Cow position:
               
chr11:55761619-55762033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-648
               

               
Cow position:
               
chr11:6580553-6581013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
252, 146
               

               
Conread position:
               
197-648
               

               
Cow position:
               
chr11:18484420-18484022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
197-648
               

               
Cow position:
               
chr11:32595206-32595638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
197-648
               

               
Cow position:
               
chr11:49148789-49149225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
270, 15
               

               
Conread position:
               
197-651
               

               
Cow position:
               
chr11:30191909-30192360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 128
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:4732078-4732527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:6234139-6233695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:17831488-17831023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 126
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:36309670-36309212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
253, 72
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:45277416-45276965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:58155827-58156297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
12, 95
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:67600507-67600961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 143
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:67931755-67931308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 51
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:68910108-68909671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 64
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:80788171-80787704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 98
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:81137961-81138395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:83043621-83043184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:83357132-83357579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 39
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr11:83397644-83398090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 57
               

               
Conread position:
               
197-653
               

               
Cow position:
               
chr11:42292096-42291656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
197-654
               

               
Cow position:
               
chr11:1380434-1380864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
451, 68
               

               
Conread position:
               
197-654
               

               
Cow position:
               
chr11:30708243-30708690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 15
               

               
Conread position:
               
197-655
               

               
Cow position:
               
chr11:30720837-30721288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 72
               

               
Conread position:
               
197-656
               

               
Cow position:
               
chr11:30764219-30764680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 387
               

               
Conread position:
               
197-657
               

               
Cow position:
               
chr11:21894414-21893961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
368, 94
               

               
Conread position:
               
197-659
               

               
Cow position:
               
chr11:19487736-19487288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
454, 86
               

               
Conread position:
               
197-659
               

               
Cow position:
               
chr11:43524362-43524800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
197-662
               

               
Cow position:
               
chr11:50153078-50152620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 15
               

               
Conread position:
               
197-663
               

               
Cow position:
               
chr11:17860414-17859959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
375, 72
               

               
Conread position:
               
197-663
               

               
Cow position:
               
chr11:64029516-64029073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
197-664
               

               
Cow position:
               
chr11:8988490-8988030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 86
               

               
Conread position:
               
197-664
               

               
Cow position:
               
chr11:70484122-70483656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 128
               

               
Conread position:
               
197-665
               

               
Cow position:
               
chr11:4436072-4436527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
320, 95
               

               
Conread position:
               
197-665
               

               
Cow position:
               
chr11:44234098-44234570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
223, 15
               

               
Conread position:
               
197-665
               

               
Cow position:
               
chr11:74316446-74316902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
197-666
               

               
Cow position:
               
chr11:18698614-18699067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 131
               

               
Conread position:
               
197-666
               

               
Cow position:
               
chr11:44031739-44032203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 125
               

               
Conread position:
               
197-666
               

               
Cow position:
               
chr11:63065393-63065850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
337, 193
               

               
Conread position:
               
197-668
               

               
Cow position:
               
chr11:23251863-23251400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 17
               

               
Conread position:
               
197-668
               

               
Cow position:
               
chr11:53778352-53778820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
461, 101
               

               
Conread position:
               
197-668
               

               
Cow position:
               
chr11:61454795-61454304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 187
               

               
Conread position:
               
197-670
               

               
Cow position:
               
chr11:77751026-77750559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
368, 12
               

               
Conread position:
               
197-673
               

               
Cow position:
               
chr11:46329239-46329703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
266, 61
               

               
Conread position:
               
197-673
               

               
Cow position:
               
chr11:63518754-63519200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
197-673
               

               
Cow position:
               
chr11:67345905-67345457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 106
               

               
Conread position:
               
197-674
               

               
Cow position:
               
chr11:46748129-46747657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 133
               

               
Conread position:
               
197-675
               

               
Cow position:
               
chr11:2788119-2788602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 76
               

               
Conread position:
               
197-675
               

               
Cow position:
               
chr11:5418524-5418053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
265, 15
               

               
Conread position:
               
197-675
               

               
Cow position:
               
chr11:30165250-30165717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
197-675
               

               
Cow position:
               
chr11:42016899-42016431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
453, 217
               

               
Conread position:
               
197-675
               

               
Cow position:
               
chr11:50111931-50112399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
75, 56
               

               
Conread position:
               
197-676
               

               
Cow position:
               
chr11:6400332-6399859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 16
               

               
Conread position:
               
197-676
               

               
Cow position:
               
chr11:15285878-15285415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
129, 153
               

               
Conread position:
               
197-676
               

               
Cow position:
               
chr11:55744213-55744677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
453, 106
               

               
Conread position:
               
197-677
               

               
Cow position:
               
chr11:52381131-52380666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
187, 75
               

               
Conread position:
               
197-678
               

               
Cow position:
               
chr11:13190959-13191444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
197-678
               

               
Cow position:
               
chr11:14649573-14649105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 56
               

               
Conread position:
               
197-678
               

               
Cow position:
               
chr11:40467384-40466914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 203
               

               
Conread position:
               
197-678
               

               
Cow position:
               
chr11:76369782-76369322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
197-679
               

               
Cow position:
               
chr11:26535515-26535994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
197-679
               

               
Cow position:
               
chr11:36182428-36182900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
173, 94
               

               
Conread position:
               
197-680
               

               
Cow position:
               
chr11:31413190-31413668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 88
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chr11:171957-171508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
227, 94
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chr11:7248137-7247679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
454, 79
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chr11:15503840-15504326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 204
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chr11:34616008-34616468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 76
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chr11:42836223-42835743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 103
               

               
Conread position:
               
197-682
               

               
Cow position:
               
chr11:18509269-18508815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 47
               

               
Conread position:
               
197-682
               

               
Cow position:
               
chr11:43430707-43430227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
224, 65
               

               
Conread position:
               
197-682
               

               
Cow position:
               
chr11:65826992-65826539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
456, 56
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chr11:1625475-1625007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
222, 91
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chr11:66733575-66734044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 121
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chr11:84385904-84385424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 15
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr11:15695078-15694591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
253, 100
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr11:44818836-44819298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
238, 204
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr11:80923596-80923109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
198-330
               

               
Cow position:
               
chr11:49056916-49057046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
198-346
               

               
Cow position:
               
chr11:81337232-81337083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
198-426
               

               
Cow position:
               
chr11:62019858-62019633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
157, 148
               

               
Conread position:
               
198-427
               

               
Cow position:
               
chr11:74929521-74929747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
198-460
               

               
Cow position:
               
chr11:31900789-31901041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
198-460
               

               
Cow position:
               
chr11:47586605-47586355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
198-460
               

               
Cow position:
               
chr11:63516563-63516822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
12, 127
               

               
Conread position:
               
198-460
               

               
Cow position:
               
chr11:81614891-81614645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
198-560
               

               
Cow position:
               
chr11:73512679-73512349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
181, 51
               

               
Conread position:
               
198-577
               

               
Cow position:
               
chr11:952009-952378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
198-615
               

               
Cow position:
               
chr11:67804493-67804891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 10
               

               
Conread position:
               
198-642
               

               
Cow position:
               
chr11:439918-439479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
54, 83
               

               
Conread position:
               
198-648
               

               
Cow position:
               
chr11:21844392-21843960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 11
               

               
Conread position:
               
198-652
               

               
Cow position:
               
chr11:41986303-41985865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
198-657
               

               
Cow position:
               
chr11:866039-866469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 131
               

               
Conread position:
               
198-679
               

               
Cow position:
               
chr11:13499755-13500221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 66
               

               
Conread position:
               
199-351
               

               
Cow position:
               
chr11:15608551-15608403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
199-373
               

               
Cow position:
               
chr11:35881653-35881820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 54
               

               
Conread position:
               
199-409
               

               
Cow position:
               
chr11:7298642-7298444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
199-428
               

               
Cow position:
               
chr11:27462643-27462429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
199-452
               

               
Cow position:
               
chr11:4384367-4384606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
199-464
               

               
Cow position:
               
chr11:68570930-68570670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
129, 57
               

               
Conread position:
               
199-473
               

               
Cow position:
               
chr11:38193893-38194165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
220, 129
               

               
Conread position:
               
199-502
               

               
Cow position:
               
chr11:8339663-8339369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
199-509
               

               
Cow position:
               
chr11:30912250-30911958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
199-521
               

               
Cow position:
               
chr11:39115235-39115549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
221, 93
               

               
Conread position:
               
199-524
               

               
Cow position:
               
chr11:18371698-18371378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
127, 15
               

               
Conread position:
               
199-534
               

               
Cow position:
               
chr11:5197336-5197006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
100, 107
               

               
Conread position:
               
199-560
               

               
Cow position:
               
chr11:41271879-41272232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
12, 130
               

               
Conread position:
               
199-563
               

               
Cow position:
               
chr11:34113015-34113363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
199-578
               

               
Cow position:
               
chr11:62151140-62150783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
214, 82
               

               
Conread position:
               
199-579
               

               
Cow position:
               
chr11:63847593-63847958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
199-640
               

               
Cow position:
               
chr11:62710129-62709713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
215, 93
               

               
Conread position:
               
199-652
               

               
Cow position:
               
chr11:35579995-35580444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 127
               

               
Conread position:
               
199-652
               

               
Cow position:
               
chr11:56728688-56729118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
199-652
               

               
Cow position:
               
chr11:66041015-66041455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 93
               

               
Conread position:
               
199-652
               

               
Cow position:
               
chr11:81143817-81143361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
85, 146
               

               
Conread position:
               
199-655
               

               
Cow position:
               
chr11:10095084-10095529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
199-656
               

               
Cow position:
               
chr11:287592-287141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
5, 44
               

               
Conread position:
               
199-656
               

               
Cow position:
               
chr11:81300871-81300433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
452, 113
               

               
Conread position:
               
199-665
               

               
Cow position:
               
chr11:6594506-6594032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
263, 15
               

               
Conread position:
               
199-666
               

               
Cow position:
               
chr11:79728932-79728475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 130
               

               
Conread position:
               
199-667
               

               
Cow position:
               
chr11:35348016-35347553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
199-668
               

               
Cow position:
               
chr11:51687984-51687537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
199-668
               

               
Cow position:
               
chr11:53773414-53773882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 130
               

               
Conread position:
               
199-677
               

               
Cow position:
               
chr11:9221984-9221514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
372, 83
               

               
Conread position:
               
199-678
               

               
Cow position:
               
chr11:36940859-36940389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 57
               

               
Conread position:
               
200-460
               

               
Cow position:
               
chr11:8105525-8105780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
214, 69
               

               
Conread position:
               
200-473
               

               
Cow position:
               
chr11:32609734-32610006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
61, 134
               

               
Conread position:
               
200-530
               

               
Cow position:
               
chr11:30120919-30120597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
214, 82
               

               
Conread position:
               
200-579
               

               
Cow position:
               
chr11:18086596-18086234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 65
               

               
Conread position:
               
200-640
               

               
Cow position:
               
chr11:45872576-45872139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 81
               

               
Conread position:
               
200-640
               

               
Cow position:
               
chr11:73354311-73353896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
200-641
               

               
Cow position:
               
chr11:13043398-13042976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
200-651
               

               
Cow position:
               
chr11:1849423-1848983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
92, 126
               

               
Conread position:
               
200-652
               

               
Cow position:
               
chr11:17321400-17321850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
314, 125
               

               
Conread position:
               
200-652
               

               
Cow position:
               
chr11:70382953-70382506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 154
               

               
Conread position:
               
200-655
               

               
Cow position:
               
chr11:38235986-38236431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 93
               

               
Conread position:
               
200-667
               

               
Cow position:
               
chr11:17227897-17227453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
200-672
               

               
Cow position:
               
chr11:46746377-46746843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
168, 69
               

               
Conread position:
               
201-419
               

               
Cow position:
               
chr11:48901334-48901125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
201-451
               

               
Cow position:
               
chr11:37100616-37100371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
135, 85
               

               
Conread position:
               
201-574
               

               
Cow position:
               
chr11:68905319-68904969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
201-628
               

               
Cow position:
               
chr11:83066239-83066651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
216, 70
               

               
Conread position:
               
201-667
               

               
Cow position:
               
chr11:26117974-26117541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
6, 73
               

               
Conread position:
               
201-668
               

               
Cow position:
               
chr11:75480283-75479825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 74
               

               
Conread position:
               
201-670
               

               
Cow position:
               
chr11:41549588-41549135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
169, 18
               

               
Conread position:
               
201-680
               

               
Cow position:
               
chr11:25791949-25791480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
201-684
               

               
Cow position:
               
chr11:33310714-33311199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 64
               

               
Conread position:
               
202-411
               

               
Cow position:
               
chr11:19508042-19508242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
202-460
               

               
Cow position:
               
chr11:62965809-62965553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
201, 95
               

               
Conread position:
               
202-468
               

               
Cow position:
               
chr11:62979222-62979493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
202-479
               

               
Cow position:
               
chr11:16251504-16251230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
210, 95
               

               
Conread position:
               
202-579
               

               
Cow position:
               
chr11:1071347-1070977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
202-598
               

               
Cow position:
               
chr11:7589935-7590320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
161, 123
               

               
Conread position:
               
202-600
               

               
Cow position:
               
chr11:6835273-6835666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 150
               

               
Conread position:
               
202-607
               

               
Cow position:
               
chr11:377904-377498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 126
               

               
Conread position:
               
203-503
               

               
Cow position:
               
chr11:42793230-42792935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
203-513
               

               
Cow position:
               
chr11:63157167-63156870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
203-542
               

               
Cow position:
               
chr11:77766853-77766517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
180, 16
               

               
Conread position:
               
203-616
               

               
Cow position:
               
chr11:34120945-34121345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
218, 15
               

               
Conread position:
               
203-622
               

               
Cow position:
               
chr11:87155262-87155674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
203-648
               

               
Cow position:
               
chr11:40818893-40818454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
209, 70
               

               
Conread position:
               
203-652
               

               
Cow position:
               
chr11:48649706-48650169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
76, 143
               

               
Conread position:
               
203-652
               

               
Cow position:
               
chr11:49152699-49153123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 63
               

               
Conread position:
               
203-652
               

               
Cow position:
               
chr11:66188576-66188138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 70
               

               
Conread position:
               
203-654
               

               
Cow position:
               
chr11:40792948-40792508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
125, 78
               

               
Conread position:
               
203-673
               

               
Cow position:
               
chr11:1486121-1485655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
176, 71
               

               
Conread position:
               
204-326
               

               
Cow position:
               
chr11:78480544-78480666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
57, 8
               

               
Conread position:
               
204-436
               

               
Cow position:
               
chr11:63520520-63520745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
211, 8
               

               
Conread position:
               
204-470
               

               
Cow position:
               
chr11:2050326-2050584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
124, 78
               

               
Conread position:
               
204-512
               

               
Cow position:
               
chr11:42003209-42002901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
204-565
               

               
Cow position:
               
chr11:35684751-35684401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
204-680
               

               
Cow position:
               
chr11:48544190-48544646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
160, 16
               

               
Conread position:
               
205-608
               

               
Cow position:
               
chr11:81281692-81282092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
109, 81
               

               
Conread position:
               
205-652
               

               
Cow position:
               
chr11:3726033-3726473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 81
               

               
Conread position:
               
205-652
               

               
Cow position:
               
chr11:35154080-35153637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
214, 120
               

               
Conread position:
               
205-652
               

               
Cow position:
               
chr11:65157660-65157222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
139, 59
               

               
Conread position:
               
205-679
               

               
Cow position:
               
chr11:77759012-77758552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
415, 7
               

               
Conread position:
               
206-545
               

               
Cow position:
               
chr11:5226993-5226651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
160, 120
               

               
Conread position:
               
206-652
               

               
Cow position:
               
chr11:20238421-20238859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
206-652
               

               
Cow position:
               
chr11:33294043-33293596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 203
               

               
Conread position:
               
206-659
               

               
Cow position:
               
chr11:5416649-5417077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
445, 30
               

               
Conread position:
               
207-573
               

               
Cow position:
               
chr11:17495995-17495634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 6
               

               
Conread position:
               
209-652
               

               
Cow position:
               
chr11:42083231-42083636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
209-681
               

               
Cow position:
               
chr11:2083899-2084359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 64
               

               
Conread position:
               
212-399
               

               
Cow position:
               
chr11:25165198-25165378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
212-410
               

               
Cow position:
               
chr11:84924344-84924148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
212-451
               

               
Cow position:
               
chr11:21819690-21819455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
155, 79
               

               
Conread position:
               
212-553
               

               
Cow position:
               
chr11:47899031-47899356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
270, 113
               

               
Conread position:
               
212-574
               

               
Cow position:
               
chr11:36659059-36658715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
7, 67
               

               
Conread position:
               
212-648
               

               
Cow position:
               
chr11:30639194-30638773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 150
               

               
Conread position:
               
212-667
               

               
Cow position:
               
chr11:42885016-42884587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
348, 80
               

               
Conread position:
               
212-674
               

               
Cow position:
               
chr11:77745496-77745042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 61
               

               
Conread position:
               
213-652
               

               
Cow position:
               
chr11:15016801-15017241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
198, 42
               

               
Conread position:
               
213-652
               

               
Cow position:
               
chr11:15632804-15632377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
156, 112
               

               
Conread position:
               
214-399
               

               
Cow position:
               
chr11:41438468-41438284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
214-460
               

               
Cow position:
               
chr11:62808892-62808657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
214-469
               

               
Cow position:
               
chr11:5677477-5677727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
152, 163
               

               
Conread position:
               
214-578
               

               
Cow position:
               
chr11:30924909-30925267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
200, 75
               

               
Conread position:
               
214-581
               

               
Cow position:
               
chr11:36848688-36849033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
194, 59
               

               
Conread position:
               
214-622
               

               
Cow position:
               
chr11:2907769-2907378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
25, 115
               

               
Conread position:
               
214-661
               

               
Cow position:
               
chr11:8525357-8524925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
437, 111
               

               
Conread position:
               
214-679
               

               
Cow position:
               
chr11:17889970-17889523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 59
               

               
Conread position:
               
215-560
               

               
Cow position:
               
chr11:76606443-76606767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
215-615
               

               
Cow position:
               
chr11:82940860-82940480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
201, 46
               

               
Conread position:
               
215-652
               

               
Cow position:
               
chr11:27248249-27248671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
212, 58
               

               
Conread position:
               
215-656
               

               
Cow position:
               
chr11:57725071-57724635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
436, 186
               

               
Conread position:
               
215-664
               

               
Cow position:
               
chr11:28367460-28367906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
242, 11
               

               
Conread position:
               
220-452
               

               
Cow position:
               
chr11:77241136-77241357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
220-672
               

               
Cow position:
               
chr11:27405306-27404868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
196, 104
               

               
Conread position:
               
220-672
               

               
Cow position:
               
chr11:62239512-62239944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
133, 30
               

               
Conread position:
               
222-515
               

               
Cow position:
               
chr11:31226029-31225762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
222-622
               

               
Cow position:
               
chr11:23385480-23385085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
145, 51
               

               
Conread position:
               
222-679
               

               
Cow position:
               
chr11:10687123-10686673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
179, 106
               

               
Conread position:
               
223-464
               

               
Cow position:
               
chr11:35668953-35668712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
201, 117
               

               
Conread position:
               
223-573
               

               
Cow position:
               
chr11:4663273-4662940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
223-574
               

               
Cow position:
               
chr11:71501357-71501025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 32
               

               
Conread position:
               
223-652
               

               
Cow position:
               
chr11:45282702-45283110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 50
               

               
Conread position:
               
223-674
               

               
Cow position:
               
chr11:5961078-5961510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 58
               

               
Conread position:
               
223-674
               

               
Cow position:
               
chr11:62620150-62620580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 56
               

               
Conread position:
               
224-615
               

               
Cow position:
               
chr11:36112184-36112564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
52, 129
               

               
Conread position:
               
224-648
               

               
Cow position:
               
chr11:25620629-25620211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 49
               

               
Conread position:
               
227-400
               

               
Cow position:
               
chr11:6329015-6329186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
227-470
               

               
Cow position:
               
chr11:2514823-2514589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
227-553
               

               
Cow position:
               
chr11:77546188-77546503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
295, 65
               

               
Conread position:
               
227-558
               

               
Cow position:
               
chr11:33348415-33348095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
227-560
               

               
Cow position:
               
chr11:42044221-42043902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
227-580
               

               
Cow position:
               
chr11:2092110-2092442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
189, 43
               

               
Conread position:
               
227-610
               

               
Cow position:
               
chr11:32436098-32436479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
200, 101
               

               
Conread position:
               
227-627
               

               
Cow position:
               
chr11:19755426-19755809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
197, 127
               

               
Conread position:
               
227-676
               

               
Cow position:
               
chr11:51293640-51293202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 63
               

               
Conread position:
               
227-680
               

               
Cow position:
               
chr11:48672471-48672920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 124
               

               
Conread position:
               
227-681
               

               
Cow position:
               
chr11:31417205-31417635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
209, 27
               

               
Conread position:
               
229-501
               

               
Cow position:
               
chr11:18591662-18591398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
229-533
               

               
Cow position:
               
chr11:18341267-18340973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
229-558
               

               
Cow position:
               
chr11:38874630-38874313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
230-675
               

               
Cow position:
               
chr11:5433040-5433473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
180, 43
               

               
Conread position:
               
231-502
               

               
Cow position:
               
chr11:83000758-83000492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
182, 37
               

               
Conread position:
               
231-652
               

               
Cow position:
               
chr11:64044012-64044400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
232-652
               

               
Cow position:
               
chr11:19593593-19594002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 119
               

               
Conread position:
               
233-556
               

               
Cow position:
               
chr11:69810679-69810994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
188, 93
               

               
Conread position:
               
234-563
               

               
Cow position:
               
chr11:61246681-61246352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
269, 31
               

               
Conread position:
               
234-640
               

               
Cow position:
               
chr11:56675694-56676096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
72, 42
               

               
Conread position:
               
234-646
               

               
Cow position:
               
chr11:81406381-81405990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
235-581
               

               
Cow position:
               
chr11:23586413-23586754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
179, 12
               

               
Conread position:
               
235-679
               

               
Cow position:
               
chr11:39462395-39462831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 106
               

               
Conread position:
               
235-684
               

               
Cow position:
               
chr11:14470144-14470573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
236-574
               

               
Cow position:
               
chr11:2925512-2925192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
236-638
               

               
Cow position:
               
chr11:34145138-34144750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
336, 89
               

               
Conread position:
               
237-460
               

               
Cow position:
               
chr11:21830573-21830353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
177, 57
               

               
Conread position:
               
237-648
               

               
Cow position:
               
chr11:35723756-35724149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
238-677
               

               
Cow position:
               
chr11:15772942-15772510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 235
               

               
Conread position:
               
239-524
               

               
Cow position:
               
chr11:61859118-61858844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
239-573
               

               
Cow position:
               
chr11:36238563-36238885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
241-649
               

               
Cow position:
               
chr11:79985897-79986313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
175, 57
               

               
Conread position:
               
241-650
               

               
Cow position:
               
chr11:11557952-11558349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
185, 40
               

               
Conread position:
               
242-479
               

               
Cow position:
               
chr11:18372862-18373089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
243-471
               

               
Cow position:
               
chr11:17553561-17553339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
124, 69
               

               
Conread position:
               
244-673
               

               
Cow position:
               
chr11:33287175-33286753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
245-655
               

               
Cow position:
               
chr11:5485795-5486202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
217, 36
               

               
Conread position:
               
246-647
               

               
Cow position:
               
chr11:65607905-65607513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
219, 82
               

               
Conread position:
               
247-652
               

               
Cow position:
               
chr11:36286488-36286887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
295, 46
               

               
Conread position:
               
248-469
               

               
Cow position:
               
chr11:36301290-36301074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
248-579
               

               
Cow position:
               
chr11:61958959-61958631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
159, 80
               

               
Conread position:
               
249-469
               

               
Cow position:
               
chr11:36672259-36672040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
84, 156
               

               
Conread position:
               
250-677
               

               
Cow position:
               
chr11:71493068-71492656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
133, 142
               

               
Conread position:
               
251-652
               

               
Cow position:
               
chr11:9463622-9464020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 170
               

               
Conread position:
               
251-680
               

               
Cow position:
               
chr11:2874178-2874612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
8, 153
               

               
Conread position:
               
256-578
               

               
Cow position:
               
chr11:27932064-27932393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
157, 98
               

               
Conread position:
               
261-629
               

               
Cow position:
               
chr11:63202436-63202087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
234, 44
               

               
Conread position:
               
261-680
               

               
Cow position:
               
chr11:5075419-5075014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
176, 27
               

               
Conread position:
               
262-459
               

               
Cow position:
               
chr11:33364146-33364336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
262-538
               

               
Cow position:
               
chr11:49231678-49231946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
262-659
               

               
Cow position:
               
chr11:41215548-41215924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
394, 30
               

               
Conread position:
               
262-671
               

               
Cow position:
               
chr11:68912947-68913346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 32
               

               
Conread position:
               
265-627
               

               
Cow position:
               
chr11:3702755-3703110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
137, 47
               

               
Conread position:
               
265-648
               

               
Cow position:
               
chr11:32421679-32421306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
98, 63
               

               
Conread position:
               
265-648
               

               
Cow position:
               
chr11:72375881-72375487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
155, 60
               

               
Conread position:
               
265-652
               

               
Cow position:
               
chr11:37804746-37804369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
265-652
               

               
Cow position:
               
chr11:47639223-47638841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
274, 38
               

               
Conread position:
               
265-656
               

               
Cow position:
               
chr11:70601016-70600640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
160, 71
               

               
Conread position:
               
265-672
               

               
Cow position:
               
chr11:38334322-38334721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 123
               

               
Conread position:
               
265-672
               

               
Cow position:
               
chr11:65058807-65058409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
87, 63
               

               
Conread position:
               
265-678
               

               
Cow position:
               
chr11:24438420-24438011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 63
               

               
Conread position:
               
265-679
               

               
Cow position:
               
chr11:64077695-64077292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
195, 33
               

               
Conread position:
               
266-671
               

               
Cow position:
               
chr11:13592542-13592940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
266-673
               

               
Cow position:
               
chr11:19592189-19591793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 138
               

               
Conread position:
               
267-652
               

               
Cow position:
               
chr11:20684770-20684387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
158, 136
               

               
Conread position:
               
268-506
               

               
Cow position:
               
chr11:48042233-48041992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
5, 155
               

               
Conread position:
               
268-667
               

               
Cow position:
               
chr11:84925408-84925020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
256, 11
               

               
Conread position:
               
268-679
               

               
Cow position:
               
chr11:27913080-27913497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 61
               

               
Conread position:
               
268-680
               

               
Cow position:
               
chr11:6245120-6245532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
269-683
               

               
Cow position:
               
chr11:23272193-23271792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 59
               

               
Conread position:
               
270-650
               

               
Cow position:
               
chr11:68841014-68841390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
28, 32
               

               
Conread position:
               
270-683
               

               
Cow position:
               
chr11:66572691-66572279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
149, 18
               

               
Conread position:
               
271-656
               

               
Cow position:
               
chr11:48383340-48383717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
276, 32
               

               
Conread position:
               
271-679
               

               
Cow position:
               
chr11:34646402-34646803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 69
               

               
Conread position:
               
272-679
               

               
Cow position:
               
chr11:3920494-3920092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
112, 129
               

               
Conread position:
               
273-579
               

               
Cow position:
               
chr11:83925855-83926156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 148
               

               
Conread position:
               
273-652
               

               
Cow position:
               
chr11:7458474-7458097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
170, 130
               

               
Conread position:
               
277-504
               

               
Cow position:
               
chr11:2811912-2811691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
136, 51
               

               
Conread position:
               
277-573
               

               
Cow position:
               
chr11:2932969-2933254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 52
               

               
Conread position:
               
277-579
               

               
Cow position:
               
chr11:30954815-30955114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
277-649
               

               
Cow position:
               
chr11:36058621-36058978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
280-578
               

               
Cow position:
               
chr11:70086144-70086445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
56, 235
               

               
Conread position:
               
280-580
               

               
Cow position:
               
chr11:83687608-83687319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
280-629
               

               
Cow position:
               
chr11:38670502-38670850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
149, 46
               

               
Conread position:
               
281-652
               

               
Cow position:
               
chr11:26144278-26143916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
283-672
               

               
Cow position:
               
chr11:7873970-7874344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 45
               

               
Conread position:
               
285-578
               

               
Cow position:
               
chr11:63909833-63909556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
285-662
               

               
Cow position:
               
chr11:30830791-30830430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
133, 43
               

               
Conread position:
               
285-676
               

               
Cow position:
               
chr11:80756961-80756587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
287-662
               

               
Cow position:
               
chr11:8545186-8544824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
188, 41
               

               
Conread position:
               
291-669
               

               
Cow position:
               
chr11:45619180-45619552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
294-577
               

               
Cow position:
               
chr11:40479021-40478741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
29, 110
               

               
Conread position:
               
294-652
               

               
Cow position:
               
chr11:70950716-70951050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
294-652
               

               
Cow position:
               
chr11:74380028-74380375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
202, 73
               

               
Conread position:
               
294-656
               

               
Cow position:
               
chr11:59862046-59862398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
263, 61
               

               
Conread position:
               
294-681
               

               
Cow position:
               
chr11:30893850-30893490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
295-684
               

               
Cow position:
               
chr11:42919393-42918996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
107, 60
               

               
Conread position:
               
297-568
               

               
Cow position:
               
chr11:77118545-77118802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 31
               

               
Conread position:
               
297-684
               

               
Cow position:
               
chr11:45742219-45742584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
298-579
               

               
Cow position:
               
chr11:16907205-16906937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
173, 30
               

               
Conread position:
               
298-681
               

               
Cow position:
               
chr11:76889886-76890251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
301-578
               

               
Cow position:
               
chr11:7460776-7460501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
219, 5
               

               
Conread position:
               
302-648
               

               
Cow position:
               
chr11:6202288-6202635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
224, 26
               

               
Conread position:
               
304-683
               

               
Cow position:
               
chr11:63435361-63435733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
305-513
               

               
Cow position:
               
chr11:21428149-21427946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
305-629
               

               
Cow position:
               
chr11:39499203-39499515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
109, 23
               

               
Conread position:
               
305-648
               

               
Cow position:
               
chr11:51729133-51729453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
305-675
               

               
Cow position:
               
chr11:66289404-66289763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
185, 97
               

               
Conread position:
               
306-578
               

               
Cow position:
               
chr11:70278263-70278000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
308-681
               

               
Cow position:
               
chr11:32254371-32254004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
309-664
               

               
Cow position:
               
chr11:84228865-84228528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
312-662
               

               
Cow position:
               
chr11:32055333-32054992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
138, 16
               

               
Conread position:
               
312-662
               

               
Cow position:
               
chr11:68112411-68112066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
113, 16
               

               
Conread position:
               
312-665
               

               
Cow position:
               
chr11:68770212-68770560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
338, 16
               

               
Conread position:
               
315-629
               

               
Cow position:
               
chr11:47755530-47755220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
230, 13
               

               
Conread position:
               
315-655
               

               
Cow position:
               
chr11:48659779-48660116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
14, 272
               

               
Conread position:
               
315-665
               

               
Cow position:
               
chr11:27907642-27907969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
14, 90
               

               
Conread position:
               
316-664
               

               
Cow position:
               
chr11:35981292-35980946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
316-674
               

               
Cow position:
               
chr11:40794498-40794140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
36, 46
               

               
Conread position:
               
322-681
               

               
Cow position:
               
chr11:59024495-59024146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
260, 80
               

               
Conread position:
               
325-641
               

               
Cow position:
               
chr11:43008444-43008134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
251, 77
               

               
Conread position:
               
325-663
               

               
Cow position:
               
chr11:62788990-62789321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
325-669
               

               
Cow position:
               
chr11:75285905-75285557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
327-673
               

               
Cow position:
               
chr11:23407325-23407662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 76
               

               
Conread position:
               
328-629
               

               
Cow position:
               
chr11:35791947-35791660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
235, 75
               

               
Conread position:
               
328-648
               

               
Cow position:
               
chr11:46998852-46999165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
128, 21
               

               
Conread position:
               
328-671
               

               
Cow position:
               
chr11:13864234-13863897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
328-683
               

               
Cow position:
               
chr11:52690657-52690309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 161
               

               
Conread position:
               
329-648
               

               
Cow position:
               
chr11:21422069-21421759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
329-652
               

               
Cow position:
               
chr11:18425372-18425056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 23
               

               
Conread position:
               
329-652
               

               
Cow position:
               
chr11:72442979-72443297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
329-683
               

               
Cow position:
               
chr11:40395304-40395650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
122, 61
               

               
Conread position:
               
330-653
               

               
Cow position:
               
chr11:61525935-61526264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
225, 87
               

               
Conread position:
               
330-666
               

               
Cow position:
               
chr11:76652884-76653218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
330-669
               

               
Cow position:
               
chr11:50472182-50472516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
330-672
               

               
Cow position:
               
chr11:64009586-64009928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
132, 87
               

               
Conread position:
               
330-677
               

               
Cow position:
               
chr11:62742766-62742441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
335-639
               

               
Cow position:
               
chr11:47772520-47772212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
9, 13
               

               
Conread position:
               
335-652
               

               
Cow position:
               
chr11:49873016-49872704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 147
               

               
Conread position:
               
337-673
               

               
Cow position:
               
chr11:13940065-13940390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 68
               

               
Conread position:
               
338-650
               

               
Cow position:
               
chr11:40608722-40608412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
82, 155
               

               
Conread position:
               
346-574
               

               
Cow position:
               
chr11:63920166-63919945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
346-577
               

               
Cow position:
               
chr11:33345326-33345557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-658
               

               
Cow position:
               
chr11:81168149-81167841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
76, 168
               

               
Conread position:
               
346-662
               

               
Cow position:
               
chr11:47311102-47310791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
346-670
               

               
Cow position:
               
chr11:63999207-63998890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
347-586
               

               
Cow position:
               
chr11:36635154-36634921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
82, 46
               

               
Conread position:
               
347-629
               

               
Cow position:
               
chr11:30728288-30728561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
348-673
               

               
Cow position:
               
chr11:42066745-42067069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
74, 34
               

               
Conread position:
               
349-656
               

               
Cow position:
               
chr11:6423517-6423211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
113, 43
               

               
Conread position:
               
356-666
               

               
Cow position:
               
chr11:48085808-48086115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 47
               

               
Conread position:
               
358-645
               

               
Cow position:
               
chr11:6633601-6633902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 5
               

               
Conread position:
               
359-581
               

               
Cow position:
               
chr11:72333488-72333704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
359-620
               

               
Cow position:
               
chr11:19233058-19232799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
359-620
               

               
Cow position:
               
chr11:30808706-30808441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
44, 222
               

               
Conread position:
               
359-652
               

               
Cow position:
               
chr11:3908714-3908431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
359-659
               

               
Cow position:
               
chr11:31874988-31875280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
292, 28
               

               
Conread position:
               
359-666
               

               
Cow position:
               
chr11:29659458-29659759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
197, 43
               

               
Conread position:
               
359-680
               

               
Cow position:
               
chr11:261367-261046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
229, 44
               

               
Conread position:
               
360-652
               

               
Cow position:
               
chr11:32881047-32881328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
360-666
               

               
Cow position:
               
chr11:5217570-5217263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
102, 63
               

               
Conread position:
               
360-672
               

               
Cow position:
               
chr11:73573543-73573850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
360-683
               

               
Cow position:
               
chr11:16314769-16315083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
361-579
               

               
Cow position:
               
chr11:35573591-35573378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
361-648
               

               
Cow position:
               
chr11:80413114-80412830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
361-652
               

               
Cow position:
               
chr11:31024910-31024618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
74, 40
               

               
Conread position:
               
363-576
               

               
Cow position:
               
chr11:71341566-71341354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
363-656
               

               
Cow position:
               
chr11:53510604-53510308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
20, 120
               

               
Conread position:
               
364-652
               

               
Cow position:
               
chr11:58594487-58594203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
364-671
               

               
Cow position:
               
chr11:53816759-53817057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
193, 32
               

               
Conread position:
               
365-640
               

               
Cow position:
               
chr11:81159781-81160052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
365-652
               

               
Cow position:
               
chr11:7385339-7385617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
64, 51
               

               
Conread position:
               
370-681
               

               
Cow position:
               
chr11:63396723-63397031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
370-684
               

               
Cow position:
               
chr11:67912246-67911952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
371-684
               

               
Cow position:
               
chr11:56288455-56288760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
98, 31
               

               
Conread position:
               
372-667
               

               
Cow position:
               
chr11:71935046-71934749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
203, 49
               

               
Conread position:
               
373-652
               

               
Cow position:
               
chr11:35564414-35564693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
376-541
               

               
Cow position:
               
chr11:55203547-55203384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
376-655
               

               
Cow position:
               
chr11:3715148-3715425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
376-675
               

               
Cow position:
               
chr11:21507916-21508218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
124, 26
               

               
Conread position:
               
376-681
               

               
Cow position:
               
chr11:6642721-6643028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
32, 111
               

               
Conread position:
               
376-683
               

               
Cow position:
               
chr11:30370020-30370317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
377-652
               

               
Cow position:
               
chr11:71110805-71111081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
197, 30
               

               
Conread position:
               
378-579
               

               
Cow position:
               
chr11:70825866-70826062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
141, 12
               

               
Conread position:
               
378-625
               

               
Cow position:
               
chr11:36920664-36920417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 8
               

               
Conread position:
               
382-664
               

               
Cow position:
               
chr11:17721886-17721605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 21
               

               
Conread position:
               
383-684
               

               
Cow position:
               
chr11:17676451-17676160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
384-671
               

               
Cow position:
               
chr11:62578722-62579008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
266, 19
               

               
Conread position:
               
387-640
               

               
Cow position:
               
chr11:4637250-4637004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
387-648
               

               
Cow position:
               
chr11:4199196-4199453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
387-678
               

               
Cow position:
               
chr11:72870824-72871107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
63, 15
               

               
Conread position:
               
387-681
               

               
Cow position:
               
chr11:3739876-3740177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
180, 16
               

               
Conread position:
               
389-579
               

               
Cow position:
               
chr11:64351868-64351677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
390-613
               

               
Cow position:
               
chr11:62778373-62778588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
135, 26
               

               
Conread position:
               
390-652
               

               
Cow position:
               
chr11:36914641-36914382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 11
               

               
Conread position:
               
390-652
               

               
Cow position:
               
chr11:62482563-62482825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
28, 193
               

               
Conread position:
               
390-665
               

               
Cow position:
               
chr11:29308501-29308780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 195
               

               
Conread position:
               
390-682
               

               
Cow position:
               
chr11:36977732-36978015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
391-652
               

               
Cow position:
               
chr11:7559925-7560184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
391-656
               

               
Cow position:
               
chr11:83042332-83042053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
391-665
               

               
Cow position:
               
chr11:61675396-61675661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
260, 10
               

               
Conread position:
               
391-677
               

               
Cow position:
               
chr11:20194502-20194219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
392-618
               

               
Cow position:
               
chr11:47837246-47837471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr11:6297152-6296907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
392-652
               

               
Cow position:
               
chr11:1067514-1067256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 184
               

               
Conread position:
               
392-655
               

               
Cow position:
               
chr11:57503410-57503666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
393-647
               

               
Cow position:
               
chr11:1147441-1147188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
393-659
               

               
Cow position:
               
chr11:57608527-57608276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
396-684
               

               
Cow position:
               
chr11:17990308-17990021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 108
               

               
Conread position:
               
401-652
               

               
Cow position:
               
chr11:689725-689476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
19, 106
               

               
Conread position:
               
401-678
               

               
Cow position:
               
chr11:54742146-54741870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
403-683
               

               
Cow position:
               
chr11:80893720-80893992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
405-652
               

               
Cow position:
               
chr11:41438246-41438002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
405-684
               

               
Cow position:
               
chr11:7315207-7314934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
406-621
               

               
Cow position:
               
chr11:14875834-14875616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
56, 8
               

               
Conread position:
               
407-684
               

               
Cow position:
               
chr11:69168527-69168803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
71, 176
               

               
Conread position:
               
408-629
               

               
Cow position:
               
chr11:15287386-15287605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
164, 176
               

               
Conread position:
               
408-679
               

               
Cow position:
               
chr11:8669955-8670226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
408-680
               

               
Cow position:
               
chr11:22102958-22102684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 174
               

               
Conread position:
               
408-683
               

               
Cow position:
               
chr11:68555152-68554878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
216, 0
               

               
Conread position:
               
410-647
               

               
Cow position:
               
chr11:3714769-3715000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
411-677
               

               
Cow position:
               
chr11:81848833-81849103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
219, 170
               

               
Conread position:
               
412-628
               

               
Cow position:
               
chr11:4392407-4392186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 175
               

               
Conread position:
               
412-682
               

               
Cow position:
               
chr11:43914240-43914505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
413-649
               

               
Cow position:
               
chr11:3405240-3405006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 170
               

               
Conread position:
               
413-650
               

               
Cow position:
               
chr11:53649426-53649190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 170
               

               
Conread position:
               
413-652
               

               
Cow position:
               
chr11:66326163-66325924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
12, 170
               

               
Conread position:
               
413-677
               

               
Cow position:
               
chr11:35443991-35444255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 151
               

               
Conread position:
               
415-583
               

               
Cow position:
               
chr11:56575815-56575643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
8, 131
               

               
Conread position:
               
415-629
               

               
Cow position:
               
chr11:36217749-36217540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
10, 134
               

               
Conread position:
               
415-643
               

               
Cow position:
               
chr11:35109587-35109366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
83, 12
               

               
Conread position:
               
415-652
               

               
Cow position:
               
chr11:53888687-53888466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
415-656
               

               
Cow position:
               
chr11:19657271-19657028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 6
               

               
Conread position:
               
416-638
               

               
Cow position:
               
chr11:12077135-12076916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
138, 128
               

               
Conread position:
               
416-638
               

               
Cow position:
               
chr11:44016924-44017153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
416-656
               

               
Cow position:
               
chr11:55636275-55636037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
235, 96
               

               
Conread position:
               
416-664
               

               
Cow position:
               
chr11:2639706-2639450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
136, 250
               

               
Conread position:
               
417-652
               

               
Cow position:
               
chr11:19119031-19118799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
417-667
               

               
Cow position:
               
chr11:56311644-56311402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
417-673
               

               
Cow position:
               
chr11:6857682-6857936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
140, 31
               

               
Conread position:
               
417-675
               

               
Cow position:
               
chr11:29677154-29677413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
49, 149
               

               
Conread position:
               
417-677
               

               
Cow position:
               
chr11:64104100-64103843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
417-680
               

               
Cow position:
               
chr11:35805610-35805866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 42
               

               
Conread position:
               
417-681
               

               
Cow position:
               
chr11:3597069-3597327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
417-683
               

               
Cow position:
               
chr11:4052285-4052031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 47
               

               
Conread position:
               
417-683
               

               
Cow position:
               
chr11:32868954-32869220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
233, 197
               

               
Conread position:
               
418-588
               

               
Cow position:
               
chr11:61137222-61137054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
418-652
               

               
Cow position:
               
chr11:18924698-18924930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
418-664
               

               
Cow position:
               
chr11:2327638-2327884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
182, 167
               

               
Conread position:
               
418-669
               

               
Cow position:
               
chr11:75090266-75090017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
233, 163
               

               
Conread position:
               
418-671
               

               
Cow position:
               
chr11:62230133-62230386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
150, 240
               

               
Conread position:
               
418-672
               

               
Cow position:
               
chr11:29954324-29954575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
230, 80
               

               
Conread position:
               
418-684
               

               
Cow position:
               
chr11:15369339-15369602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 151
               

               
Conread position:
               
419-664
               

               
Cow position:
               
chr11:7500696-7500944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 162
               

               
Conread position:
               
420-615
               

               
Cow position:
               
chr11:53853043-53853236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
420-648
               

               
Cow position:
               
chr11:5294156-5294384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
173, 63
               

               
Conread position:
               
420-650
               

               
Cow position:
               
chr11:29786545-29786312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
420-684
               

               
Cow position:
               
chr11:3219920-3220177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
60, 56
               

               
Conread position:
               
420-684
               

               
Cow position:
               
chr11:62889939-62889672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
231, 161
               

               
Conread position:
               
421-585
               

               
Cow position:
               
chr11:29983761-29983599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
421-604
               

               
Cow position:
               
chr11:45849544-45849361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 162
               

               
Conread position:
               
421-627
               

               
Cow position:
               
chr11:82289538-82289746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
160, 56
               

               
Conread position:
               
421-645
               

               
Cow position:
               
chr11:18543550-18543345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
421-652
               

               
Cow position:
               
chr11:35352083-35351850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
161, 55
               

               
Conread position:
               
421-652
               

               
Cow position:
               
chr11:62811253-62811479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
421-654
               

               
Cow position:
               
chr11:15382547-15382310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
421-655
               

               
Cow position:
               
chr11:34644611-34644842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 46
               

               
Conread position:
               
421-656
               

               
Cow position:
               
chr11:70422636-70422408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
421-668
               

               
Cow position:
               
chr11:32126561-32126815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
41, 142
               

               
Conread position:
               
421-671
               

               
Cow position:
               
chr11:68883674-68883922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
140, 160
               

               
Conread position:
               
421-674
               

               
Cow position:
               
chr11:30172265-30172504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
227, 56
               

               
Conread position:
               
421-679
               

               
Cow position:
               
chr11:5219203-5218954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
218, 10
               

               
Conread position:
               
421-680
               

               
Cow position:
               
chr11:22676071-22676323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
421-683
               

               
Cow position:
               
chr11:71854323-71854061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
218, 93
               

               
Conread position:
               
422-652
               

               
Cow position:
               
chr11:27343227-27343455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
422-652
               

               
Cow position:
               
chr11:28078460-28078672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
422-684
               

               
Cow position:
               
chr11:6267148-6267428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
423-615
               

               
Cow position:
               
chr11:35669994-35669811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
423-623
               

               
Cow position:
               
chr11:34136201-34136395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
423-629
               

               
Cow position:
               
chr11:56499795-56499998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
423-652
               

               
Cow position:
               
chr11:41213000-41213235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
56, 174
               

               
Conread position:
               
423-673
               

               
Cow position:
               
chr11:35562677-35562927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
225, 159
               

               
Conread position:
               
423-677
               

               
Cow position:
               
chr11:35665605-35665357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
424-652
               

               
Cow position:
               
chr11:6006265-6006492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 73
               

               
Conread position:
               
424-656
               

               
Cow position:
               
chr11:21885792-21886017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
424-666
               

               
Cow position:
               
chr11:10956914-10956677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
424-679
               

               
Cow position:
               
chr11:36218251-36218507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
227, 60
               

               
Conread position:
               
425-629
               

               
Cow position:
               
chr11:39554238-39554029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 151
               

               
Conread position:
               
425-684
               

               
Cow position:
               
chr11:5231693-5231435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 93
               

               
Conread position:
               
426-648
               

               
Cow position:
               
chr11:67312741-67312964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
152, 200
               

               
Conread position:
               
427-673
               

               
Cow position:
               
chr11:32354030-32353783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
39, 119
               

               
Conread position:
               
431-578
               

               
Cow position:
               
chr11:68173497-68173645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
431-653
               

               
Cow position:
               
chr11:58173591-58173817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
157, 61
               

               
Conread position:
               
431-663
               

               
Cow position:
               
chr11:28675042-28675272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
224, 75
               

               
Conread position:
               
432-652
               

               
Cow position:
               
chr11:69417370-69417586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
432-665
               

               
Cow position:
               
chr11:3896732-3896502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
432-676
               

               
Cow position:
               
chr11:66939626-66939387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
432-678
               

               
Cow position:
               
chr11:6395722-6395961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
156, 44
               

               
Conread position:
               
433-579
               

               
Cow position:
               
chr11:2344218-2344368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
433-668
               

               
Cow position:
               
chr11:9237879-9237648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
216, 148
               

               
Conread position:
               
433-672
               

               
Cow position:
               
chr11:30895036-30894800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
434-647
               

               
Cow position:
               
chr11:78544252-78544463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
434-652
               

               
Cow position:
               
chr11:33001933-33002150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
113, 149
               

               
Conread position:
               
434-652
               

               
Cow position:
               
chr11:34968645-34968430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
434-652
               

               
Cow position:
               
chr11:35768854-35769070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
434-675
               

               
Cow position:
               
chr11:63975098-63975335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
434-678
               

               
Cow position:
               
chr11:32777648-32777881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
434-678
               

               
Cow position:
               
chr11:35923823-35924069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
217, 141
               

               
Conread position:
               
435-629
               

               
Cow position:
               
chr11:64408946-64409126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
435-656
               

               
Cow position:
               
chr11:36520844-36521067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 127
               

               
Conread position:
               
435-667
               

               
Cow position:
               
chr11:32710484-32710717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
128, 109
               

               
Conread position:
               
437-675
               

               
Cow position:
               
chr11:4221290-4221523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 41
               

               
Conread position:
               
438-678
               

               
Cow position:
               
chr11:78820124-78820357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
440-668
               

               
Cow position:
               
chr11:6352778-6353007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
441-648
               

               
Cow position:
               
chr11:32782908-32782695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
441-653
               

               
Cow position:
               
chr11:2900745-2900529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
441-670
               

               
Cow position:
               
chr11:47784750-47784980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
124, 215
               

               
Conread position:
               
441-675
               

               
Cow position:
               
chr11:4395364-4395130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
106, 53
               

               
Conread position:
               
441-676
               

               
Cow position:
               
chr11:27972449-27972213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
182, 16
               

               
Conread position:
               
441-677
               

               
Cow position:
               
chr11:19739420-19739189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
210, 140
               

               
Conread position:
               
441-678
               

               
Cow position:
               
chr11:48776341-48776100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
62, 142
               

               
Conread position:
               
441-682
               

               
Cow position:
               
chr11:40517140-40516898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
206, 51
               

               
Conread position:
               
442-666
               

               
Cow position:
               
chr11:54428596-54428820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
206, 29
               

               
Conread position:
               
443-652
               

               
Cow position:
               
chr11:73984026-73983807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
443-666
               

               
Cow position:
               
chr11:25783690-25783908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
166, 138
               

               
Conread position:
               
443-673
               

               
Cow position:
               
chr11:4150929-4151147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
443-676
               

               
Cow position:
               
chr11:45350534-45350298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
208, 138
               

               
Conread position:
               
444-652
               

               
Cow position:
               
chr11:3118954-3119158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
444-652
               

               
Cow position:
               
chr11:51846276-51846480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
445-668
               

               
Cow position:
               
chr11:46245885-46245662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
116, 206
               

               
Conread position:
               
445-672
               

               
Cow position:
               
chr11:10562988-10563208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
83, 137
               

               
Conread position:
               
445-679
               

               
Cow position:
               
chr11:42084696-42084463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
445-683
               

               
Cow position:
               
chr11:17517378-17517613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
445-683
               

               
Cow position:
               
chr11:46884353-46884587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
445-684
               

               
Cow position:
               
chr11:18119481-18119718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
222, 136
               

               
Conread position:
               
446-629
               

               
Cow position:
               
chr11:60486438-60486256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
446-673
               

               
Cow position:
               
chr11:55399173-55398948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
14, 107
               

               
Conread position:
               
447-579
               

               
Cow position:
               
chr11:70517612-70517481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
447-652
               

               
Cow position:
               
chr11:74427659-74427862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
447-666
               

               
Cow position:
               
chr11:25968869-25968654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
201, 31
               

               
Conread position:
               
447-678
               

               
Cow position:
               
chr11:6094421-6094194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
107, 137
               

               
Conread position:
               
448-652
               

               
Cow position:
               
chr11:79548954-79548750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
449-652
               

               
Cow position:
               
chr11:35183005-35182804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
449-683
               

               
Cow position:
               
chr11:87172093-87171862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
450-625
               

               
Cow position:
               
chr11:35139892-35140066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
450-648
               

               
Cow position:
               
chr11:68326879-68326683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
450-652
               

               
Cow position:
               
chr11:66099878-66099674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 76
               

               
Conread position:
               
450-659
               

               
Cow position:
               
chr11:27502717-27502513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
450-663
               

               
Cow position:
               
chr11:81041985-81041769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
106, 72
               

               
Conread position:
               
450-666
               

               
Cow position:
               
chr11:37100184-37099975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
450-668
               

               
Cow position:
               
chr11:10876263-10876477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
450-668
               

               
Cow position:
               
chr11:47110238-47110455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
116, 5
               

               
Conread position:
               
450-675
               

               
Cow position:
               
chr11:12555321-12555096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
206, 131
               

               
Conread position:
               
450-679
               

               
Cow position:
               
chr11:21830225-21830001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
450-682
               

               
Cow position:
               
chr11:47314447-47314210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
114, 29
               

               
Conread position:
               
451-652
               

               
Cow position:
               
chr11:77241692-77241885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
451-666
               

               
Cow position:
               
chr11:20234670-20234881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
451-675
               

               
Cow position:
               
chr11:17369515-17369731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
451-676
               

               
Cow position:
               
chr11:36361657-36361434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
451-681
               

               
Cow position:
               
chr11:86895362-86895585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
199, 130
               

               
Conread position:
               
451-683
               

               
Cow position:
               
chr11:42192202-42191959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
451-683
               

               
Cow position:
               
chr11:60516547-60516316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
195, 40
               

               
Conread position:
               
452-678
               

               
Cow position:
               
chr11:47411828-47412047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
452-681
               

               
Cow position:
               
chr11:64781073-64781295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
454-640
               

               
Cow position:
               
chr11:27760506-27760689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
454-652
               

               
Cow position:
               
chr11:60296719-60296921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
118, 37
               

               
Conread position:
               
454-665
               

               
Cow position:
               
chr11:1980279-1980069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
454-670
               

               
Cow position:
               
chr11:15366984-15366775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
193, 119
               

               
Conread position:
               
454-671
               

               
Cow position:
               
chr11:25603936-25604152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
103, 202
               

               
Conread position:
               
454-671
               

               
Cow position:
               
chr11:48232816-48233040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
107, 179
               

               
Conread position:
               
454-673
               

               
Cow position:
               
chr11:68660622-68660410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
454-684
               

               
Cow position:
               
chr11:12079825-12080055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
118, 203
               

               
Conread position:
               
455-652
               

               
Cow position:
               
chr11:77208064-77208270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
127, 62
               

               
Conread position:
               
455-678
               

               
Cow position:
               
chr11:41980215-41979997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
456-649
               

               
Cow position:
               
chr11:9836466-9836275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
456-668
               

               
Cow position:
               
chr11:42497835-42498043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
456-670
               

               
Cow position:
               
chr11:49396535-49396322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
194, 111
               

               
Conread position:
               
457-648
               

               
Cow position:
               
chr11:73940572-73940383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
458-666
               

               
Cow position:
               
chr11:42155217-42155422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
458-670
               

               
Cow position:
               
chr11:36917784-36917564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
116, 73
               

               
Conread position:
               
459-680
               

               
Cow position:
               
chr11:7571618-7571826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
460-670
               

               
Cow position:
               
chr11:41278180-41278385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
461-652
               

               
Cow position:
               
chr11:76896378-76896190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
461-677
               

               
Cow position:
               
chr11:1931957-1932176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 27
               

               
Conread position:
               
461-680
               

               
Cow position:
               
chr11:23220357-23220573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 102
               

               
Conread position:
               
461-682
               

               
Cow position:
               
chr11:4363916-4363703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
190, 29
               

               
Conread position:
               
462-640
               

               
Cow position:
               
chr11:2835855-2836031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
462-648
               

               
Cow position:
               
chr11:63484932-63485111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 116
               

               
Conread position:
               
462-666
               

               
Cow position:
               
chr11:42064228-42064027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 71
               

               
Conread position:
               
462-668
               

               
Cow position:
               
chr11:35544085-35544283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
462-671
               

               
Cow position:
               
chr11:33971807-33971597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
462-673
               

               
Cow position:
               
chr11:5264093-5264298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
462-673
               

               
Cow position:
               
chr11:33368079-33368276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
185, 54
               

               
Conread position:
               
462-673
               

               
Cow position:
               
chr11:79666265-79666058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
462-677
               

               
Cow position:
               
chr11:1076389-1076612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
85, 173
               

               
Conread position:
               
463-641
               

               
Cow position:
               
chr11:21173440-21173265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
463-678
               

               
Cow position:
               
chr11:42065647-42065858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
103, 78
               

               
Conread position:
               
464-644
               

               
Cow position:
               
chr11:60720457-60720279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
464-658
               

               
Cow position:
               
chr11:63499128-63498940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
186, 18
               

               
Conread position:
               
464-663
               

               
Cow position:
               
chr11:30322494-30322300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
464-672
               

               
Cow position:
               
chr11:36136108-36136312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
186, 50
               

               
Conread position:
               
464-672
               

               
Cow position:
               
chr11:67538119-67537914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
464-674
               

               
Cow position:
               
chr11:57767189-57767397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
183, 22
               

               
Conread position:
               
464-681
               

               
Cow position:
               
chr11:76248048-76248257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
464-683
               

               
Cow position:
               
chr11:6320134-6319912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
187, 116
               

               
Conread position:
               
464-683
               

               
Cow position:
               
chr11:23518621-23518404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
99, 119
               

               
Conread position:
               
464-684
               

               
Cow position:
               
chr11:32653287-32653508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
185, 110
               

               
Conread position:
               
465-664
               

               
Cow position:
               
chr11:80008068-80007867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
123, 66
               

               
Conread position:
               
465-666
               

               
Cow position:
               
chr11:81066050-81065853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
465-668
               

               
Cow position:
               
chr11:80370114-80370314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
191, 26
               

               
Conread position:
               
465-671
               

               
Cow position:
               
chr11:19579016-19578820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
465-682
               

               
Cow position:
               
chr11:33373965-33374180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
199, 111
               

               
Conread position:
               
465-682
               

               
Cow position:
               
chr11:36976373-36976590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
185, 34
               

               
Conread position:
               
467-666
               

               
Cow position:
               
chr11:44619956-44620152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
181, 114
               

               
Conread position:
               
467-675
               

               
Cow position:
               
chr11:46314011-46314221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
471-641
               

               
Cow position:
               
chr11:26343107-26343274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
471-652
               

               
Cow position:
               
chr11:74152749-74152566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
472-621
               

               
Cow position:
               
chr11:17807956-17807809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
472-666
               

               
Cow position:
               
chr11:34778437-34778244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
80, 69
               

               
Conread position:
               
473-666
               

               
Cow position:
               
chr11:26442497-26442305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
177, 92
               

               
Conread position:
               
480-675
               

               
Cow position:
               
chr11:13279183-13279376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
171, 16
               

               
Conread position:
               
483-672
               

               
Cow position:
               
chr11:21124593-21124407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
483-673
               

               
Cow position:
               
chr11:68570363-68570175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
173, 79
               

               
Conread position:
               
484-652
               

               
Cow position:
               
chr11:35733065-35732900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
484-652
               

               
Cow position:
               
chr11:49486797-49486972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
484-671
               

               
Cow position:
               
chr11:26057632-26057441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
78, 94
               

               
Conread position:
               
484-671
               

               
Cow position:
               
chr11:81673444-81673631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
126, 92
               

               
Conread position:
               
484-673
               

               
Cow position:
               
chr11:37564892-37565073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
484-678
               

               
Cow position:
               
chr11:63407714-63407903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
484-679
               

               
Cow position:
               
chr11:83028012-83028200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
484-681
               

               
Cow position:
               
chr11:7652048-7651853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
145, 97
               

               
Conread position:
               
484-684
               

               
Cow position:
               
chr11:21590404-21590603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
79, 99
               

               
Conread position:
               
485-679
               

               
Cow position:
               
chr11:32800645-32800840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
163, 82
               

               
Conread position:
               
486-649
               

               
Cow position:
               
chr11:33369171-33369332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
486-673
               

               
Cow position:
               
chr11:63849931-63849747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
486-675
               

               
Cow position:
               
chr11:71303599-71303785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
486-684
               

               
Cow position:
               
chr11:67208273-67208465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
181, 89
               

               
Conread position:
               
487-670
               

               
Cow position:
               
chr11:49192436-49192252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
171, 60
               

               
Conread position:
               
489-648
               

               
Cow position:
               
chr11:43641410-43641567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
489-676
               

               
Cow position:
               
chr11:36300558-36300378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
489-676
               

               
Cow position:
               
chr11:62606440-62606625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
489-677
               

               
Cow position:
               
chr11:44176619-44176800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
491-650
               

               
Cow position:
               
chr11:35434639-35434476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
491-665
               

               
Cow position:
               
chr11:36847193-36847365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
491-666
               

               
Cow position:
               
chr11:41140912-41141082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
491-667
               

               
Cow position:
               
chr11:25614788-25614605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
491-668
               

               
Cow position:
               
chr11:62004445-62004273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
491-683
               

               
Cow position:
               
chr11:17553055-17552863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
72, 50
               

               
Conread position:
               
492-679
               

               
Cow position:
               
chr11:11483338-11483533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
493-668
               

               
Cow position:
               
chr11:15881393-15881221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
60, 51
               

               
Conread position:
               
495-684
               

               
Cow position:
               
chr11:6429728-6429536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
496-667
               

               
Cow position:
               
chr11:44016274-44016444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
154, 91
               

               
Conread position:
               
496-669
               

               
Cow position:
               
chr11:51683246-51683413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
500-668
               

               
Cow position:
               
chr11:63491052-63491220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
157, 81
               

               
Conread position:
               
500-672
               

               
Cow position:
               
chr11:24551425-24551595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
500-680
               

               
Cow position:
               
chr11:33271465-33271637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
500-681
               

               
Cow position:
               
chr11:32817782-32817605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
508-652
               

               
Cow position:
               
chr11:4389944-4390086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
508-655
               

               
Cow position:
               
chr11:26823152-26823298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
508-656
               

               
Cow position:
               
chr11:38657141-38656995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
508-682
               

               
Cow position:
               
chr11:23279115-23278941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 83
               

               
Conread position:
               
508-683
               

               
Cow position:
               
chr11:15745043-15744870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
132, 55
               

               
Conread position:
               
508-683
               

               
Cow position:
               
chr11:80695200-80695026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
147, 74
               

               
Conread position:
               
510-665
               

               
Cow position:
               
chr11:6259042-6258889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
514-648
               

               
Cow position:
               
chr11:8828054-8828189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
519-656
               

               
Cow position:
               
chr11:68592071-68592206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
519-666
               

               
Cow position:
               
chr11:69035212-69035357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
519-678
               

               
Cow position:
               
chr11:64607197-64607039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
53, 38
               
Show alignments to all cow chromosomes.