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Cow genome map

           
Conread name:
           
Ss1.1-pigcb_1823.5
        

               
Conread position:
               
152-666
               

               
Cow position:
               
chr28:10606900-10606420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
178-342
               

               
Cow position:
               
chr28:29806461-29806293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
178-583
               

               
Cow position:
               
chr28:4070715-4071106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
178-614
               

               
Cow position:
               
chr28:11687289-11686852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
20, 148
               

               
Conread position:
               
178-659
               

               
Cow position:
               
chr28:3745946-3746408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
180-512
               

               
Cow position:
               
chr28:18354571-18354264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
180-545
               

               
Cow position:
               
chr28:7723649-7723288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
197, 147
               

               
Conread position:
               
180-556
               

               
Cow position:
               
chr28:15044108-15043749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
233, 62
               

               
Conread position:
               
180-574
               

               
Cow position:
               
chr28:11884776-11884388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 15
               

               
Conread position:
               
182-646
               

               
Cow position:
               
chr28:5273676-5273229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
237, 30
               

               
Conread position:
               
182-649
               

               
Cow position:
               
chr28:15601013-15601475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
124, 30
               

               
Conread position:
               
182-656
               

               
Cow position:
               
chr28:23459892-23460352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 196
               

               
Conread position:
               
182-666
               

               
Cow position:
               
chr28:21868201-21868675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 30
               

               
Conread position:
               
182-671
               

               
Cow position:
               
chr28:20124534-20125004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 107
               

               
Conread position:
               
190-622
               

               
Cow position:
               
chr28:22345776-22346199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
191-565
               

               
Cow position:
               
chr28:7549304-7548936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
191-579
               

               
Cow position:
               
chr28:26220019-26220392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
153, 75
               

               
Conread position:
               
191-644
               

               
Cow position:
               
chr28:11733367-11732904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
234, 136
               

               
Conread position:
               
191-653
               

               
Cow position:
               
chr28:3493026-3492582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
191-684
               

               
Cow position:
               
chr28:22371918-22371437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
215, 27
               

               
Conread position:
               
192-371
               

               
Cow position:
               
chr28:32813240-32813063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
140, 47
               

               
Conread position:
               
192-560
               

               
Cow position:
               
chr28:13865604-13865956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 62
               

               
Conread position:
               
192-652
               

               
Cow position:
               
chr28:26719119-26719534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
192-664
               

               
Cow position:
               
chr28:34430668-34430207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
362, 135
               

               
Conread position:
               
193-618
               

               
Cow position:
               
chr28:26103475-26103868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
186, 76
               

               
Conread position:
               
194-426
               

               
Cow position:
               
chr28:34082261-34082031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
225, 116
               

               
Conread position:
               
194-433
               

               
Cow position:
               
chr28:6051493-6051726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
60, 67
               

               
Conread position:
               
194-472
               

               
Cow position:
               
chr28:28076647-28076390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
194-529
               

               
Cow position:
               
chr28:21380638-21380967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
194-533
               

               
Cow position:
               
chr28:18591030-18591360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
194-674
               

               
Cow position:
               
chr28:16204573-16204107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 135
               

               
Conread position:
               
195-478
               

               
Cow position:
               
chr28:25424540-25424259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
206, 15
               

               
Conread position:
               
195-680
               

               
Cow position:
               
chr28:9426580-9426124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
196-649
               

               
Cow position:
               
chr28:12951197-12951617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
197-326
               

               
Cow position:
               
chr28:7372487-7372362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
197-328
               

               
Cow position:
               
chr28:8103625-8103497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
197-330
               

               
Cow position:
               
chr28:7389089-7389220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
197-330
               

               
Cow position:
               
chr28:25334784-25334917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-334
               

               
Cow position:
               
chr28:2340295-2340431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
197-334
               

               
Cow position:
               
chr28:25498740-25498603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-343
               

               
Cow position:
               
chr28:7882565-7882716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
197-352
               

               
Cow position:
               
chr28:10295953-10296111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
64, 72
               

               
Conread position:
               
197-368
               

               
Cow position:
               
chr28:9294777-9294942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 64
               

               
Conread position:
               
197-399
               

               
Cow position:
               
chr28:23621312-23621503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
197-400
               

               
Cow position:
               
chr28:10888427-10888624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
197-400
               

               
Cow position:
               
chr28:17738315-17738114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
197-406
               

               
Cow position:
               
chr28:7328666-7328860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
197-411
               

               
Cow position:
               
chr28:8348889-8348682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
197-411
               

               
Cow position:
               
chr28:11451703-11451493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
197-421
               

               
Cow position:
               
chr28:19295599-19295379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
7, 69
               

               
Conread position:
               
197-431
               

               
Cow position:
               
chr28:17356100-17355873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
197-434
               

               
Cow position:
               
chr28:23775809-23776039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
210, 128
               

               
Conread position:
               
197-444
               

               
Cow position:
               
chr28:2905344-2905576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
197-446
               

               
Cow position:
               
chr28:5658318-5658547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-447
               

               
Cow position:
               
chr28:17029951-17029713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-447
               

               
Cow position:
               
chr28:26784703-26784459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
197-457
               

               
Cow position:
               
chr28:22170954-22170695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
215, 76
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr28:4022146-4022405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr28:4880500-4880247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
238, 76
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr28:5773406-5773653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr28:23480498-23480241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
197-464
               

               
Cow position:
               
chr28:5768958-5769219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
197-465
               

               
Cow position:
               
chr28:19222833-19222580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-465
               

               
Cow position:
               
chr28:24646304-24646561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
213, 128
               

               
Conread position:
               
197-469
               

               
Cow position:
               
chr28:7503602-7503874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
252, 127
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chr28:16253091-16252824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
216, 10
               

               
Conread position:
               
197-479
               

               
Cow position:
               
chr28:17316623-17316901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
197-479
               

               
Cow position:
               
chr28:18790775-18791052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
169, 23
               

               
Conread position:
               
197-504
               

               
Cow position:
               
chr28:10529719-10529429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
197-504
               

               
Cow position:
               
chr28:10534165-10533874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-504
               

               
Cow position:
               
chr28:16686796-16687088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
56, 68
               

               
Conread position:
               
197-504
               

               
Cow position:
               
chr28:22485012-22485314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
205, 27
               

               
Conread position:
               
197-509
               

               
Cow position:
               
chr28:4587864-4588163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
147, 16
               

               
Conread position:
               
197-512
               

               
Cow position:
               
chr28:5826712-5827019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
129, 58
               

               
Conread position:
               
197-515
               

               
Cow position:
               
chr28:25070880-25071191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
130, 111
               

               
Conread position:
               
197-521
               

               
Cow position:
               
chr28:11380279-11379963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
243, 131
               

               
Conread position:
               
197-523
               

               
Cow position:
               
chr28:13267545-13267869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
204, 130
               

               
Conread position:
               
197-530
               

               
Cow position:
               
chr28:27683942-27683612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
206, 129
               

               
Conread position:
               
197-533
               

               
Cow position:
               
chr28:5792466-5792798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 68
               

               
Conread position:
               
197-539
               

               
Cow position:
               
chr28:8416351-8416010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
166, 30
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chr28:9267864-9268209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
206, 130
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chr28:34008183-34007840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
205, 130
               

               
Conread position:
               
197-547
               

               
Cow position:
               
chr28:8963287-8963621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chr28:2862625-2862977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
219, 128
               

               
Conread position:
               
197-553
               

               
Cow position:
               
chr28:4841633-4841280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 129
               

               
Conread position:
               
197-553
               

               
Cow position:
               
chr28:5128963-5128618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
323, 14
               

               
Conread position:
               
197-561
               

               
Cow position:
               
chr28:21598489-21598132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
182, 15
               

               
Conread position:
               
197-565
               

               
Cow position:
               
chr28:26922600-26922246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-568
               

               
Cow position:
               
chr28:13607649-13608023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 61
               

               
Conread position:
               
197-572
               

               
Cow position:
               
chr28:16085088-16085453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
197-574
               

               
Cow position:
               
chr28:3408453-3408086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
127, 15
               

               
Conread position:
               
197-574
               

               
Cow position:
               
chr28:10172650-10172286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
197-574
               

               
Cow position:
               
chr28:25596396-25596759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
213, 70
               

               
Conread position:
               
197-577
               

               
Cow position:
               
chr28:23410560-23410189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
291, 92
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr28:14933726-14934093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr28:16346762-16346398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
223, 15
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr28:19026239-19025870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
202, 58
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr28:25762793-25763156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
139, 58
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr28:6971575-6971210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
231, 15
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr28:16109708-16110073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 92
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr28:19080084-19079709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 72
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr28:31110241-31109865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
357, 23
               

               
Conread position:
               
197-583
               

               
Cow position:
               
chr28:25249119-25249494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
198, 71
               

               
Conread position:
               
197-583
               

               
Cow position:
               
chr28:29199491-29199870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
201, 15
               

               
Conread position:
               
197-583
               

               
Cow position:
               
chr28:29434661-29434286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
111, 84
               

               
Conread position:
               
197-586
               

               
Cow position:
               
chr28:12619326-12619714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
152, 128
               

               
Conread position:
               
197-586
               

               
Cow position:
               
chr28:20313039-20313422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
360, 43
               

               
Conread position:
               
197-594
               

               
Cow position:
               
chr28:5203966-5204346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
222, 12
               

               
Conread position:
               
197-598
               

               
Cow position:
               
chr28:21354988-21355387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 63
               

               
Conread position:
               
197-608
               

               
Cow position:
               
chr28:16386742-16386359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
197-615
               

               
Cow position:
               
chr28:23793537-23793144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
290, 14
               

               
Conread position:
               
197-625
               

               
Cow position:
               
chr28:4914338-4913915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 310
               

               
Conread position:
               
197-625
               

               
Cow position:
               
chr28:6059709-6059284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
122, 173
               

               
Conread position:
               
197-627
               

               
Cow position:
               
chr28:26743386-26743810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 15
               

               
Conread position:
               
197-628
               

               
Cow position:
               
chr28:19222381-19221963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
385, 11
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chr28:10682054-10681641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 43
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chr28:10744973-10745396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 94
               

               
Conread position:
               
197-646
               

               
Cow position:
               
chr28:3144126-3143687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
197-646
               

               
Cow position:
               
chr28:22323029-22323457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
197-647
               

               
Cow position:
               
chr28:7268172-7267750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
216, 43
               

               
Conread position:
               
197-648
               

               
Cow position:
               
chr28:5931117-5931544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 82
               

               
Conread position:
               
197-648
               

               
Cow position:
               
chr28:13474070-13474499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
147, 15
               

               
Conread position:
               
197-648
               

               
Cow position:
               
chr28:22132690-22133108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
113, 84
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr28:8787314-8787743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
147, 21
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr28:11423040-11422615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
220, 33
               

               
Conread position:
               
197-654
               

               
Cow position:
               
chr28:28766146-28765697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 149
               

               
Conread position:
               
197-655
               

               
Cow position:
               
chr28:11527492-11527052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
227, 65
               

               
Conread position:
               
197-656
               

               
Cow position:
               
chr28:21844720-21845159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-656
               

               
Cow position:
               
chr28:27218084-27218533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
197-657
               

               
Cow position:
               
chr28:5684468-5684909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 112
               

               
Conread position:
               
197-659
               

               
Cow position:
               
chr28:3024148-3023705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
223, 80
               

               
Conread position:
               
197-659
               

               
Cow position:
               
chr28:9285614-9285166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 128
               

               
Conread position:
               
197-663
               

               
Cow position:
               
chr28:16211333-16210884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
75, 130
               

               
Conread position:
               
197-664
               

               
Cow position:
               
chr28:10669338-10669803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
265, 97
               

               
Conread position:
               
197-664
               

               
Cow position:
               
chr28:14657464-14657932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 94
               

               
Conread position:
               
197-665
               

               
Cow position:
               
chr28:9636693-9636241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
421, 128
               

               
Conread position:
               
197-666
               

               
Cow position:
               
chr28:23616166-23616624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 132
               

               
Conread position:
               
197-668
               

               
Cow position:
               
chr28:11585444-11584991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 84
               

               
Conread position:
               
197-668
               

               
Cow position:
               
chr28:21104083-21103600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 30
               

               
Conread position:
               
197-668
               

               
Cow position:
               
chr28:23530628-23531083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
197-673
               

               
Cow position:
               
chr28:5817611-5818062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 30
               

               
Conread position:
               
197-676
               

               
Cow position:
               
chr28:7698218-7697751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-676
               

               
Cow position:
               
chr28:34878209-34877745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 76
               

               
Conread position:
               
197-677
               

               
Cow position:
               
chr28:4282728-4282259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
452, 103
               

               
Conread position:
               
197-677
               

               
Cow position:
               
chr28:5236836-5236366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
377, 22
               

               
Conread position:
               
197-677
               

               
Cow position:
               
chr28:30293826-30293358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 100
               

               
Conread position:
               
197-679
               

               
Cow position:
               
chr28:14997828-14998294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
219, 16
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chr28:7144552-7145033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
216, 83
               

               
Conread position:
               
197-682
               

               
Cow position:
               
chr28:24672037-24672500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chr28:15272497-15272033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
453, 80
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr28:2801007-2801465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr28:2819522-2820002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 95
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr28:10616187-10615714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 11
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr28:15263961-15263479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 204
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr28:24368187-24367708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
64, 215
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr28:31223830-31223316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
198-451
               

               
Cow position:
               
chr28:21672564-21672804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
198-500
               

               
Cow position:
               
chr28:12758742-12758443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
221, 11
               

               
Conread position:
               
198-544
               

               
Cow position:
               
chr28:19515627-19515286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
204, 129
               

               
Conread position:
               
198-560
               

               
Cow position:
               
chr28:20963767-20963412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
198-565
               

               
Cow position:
               
chr28:3914475-3914839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
221, 15
               

               
Conread position:
               
198-646
               

               
Cow position:
               
chr28:7512827-7512382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 129
               

               
Conread position:
               
198-666
               

               
Cow position:
               
chr28:17638102-17637638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
290, 79
               

               
Conread position:
               
198-666
               

               
Cow position:
               
chr28:34442999-34442540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 203
               

               
Conread position:
               
198-668
               

               
Cow position:
               
chr28:33036701-33036266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
6, 17
               

               
Conread position:
               
198-672
               

               
Cow position:
               
chr28:34229994-34230456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
451, 105
               

               
Conread position:
               
199-373
               

               
Cow position:
               
chr28:20760158-20759987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
199-408
               

               
Cow position:
               
chr28:3077759-3077957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
199-412
               

               
Cow position:
               
chr28:24996822-24996617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
199-470
               

               
Cow position:
               
chr28:8682085-8681812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
99, 60
               

               
Conread position:
               
199-475
               

               
Cow position:
               
chr28:5904502-5904764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
211, 13
               

               
Conread position:
               
199-504
               

               
Cow position:
               
chr28:31987369-31987675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
126, 49
               

               
Conread position:
               
199-541
               

               
Cow position:
               
chr28:23675910-23676236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr28:11786942-11786612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
272, 13
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr28:13176913-13176573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
199-560
               

               
Cow position:
               
chr28:24343135-24343483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
199-573
               

               
Cow position:
               
chr28:11752379-11752011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
213, 126
               

               
Conread position:
               
199-574
               

               
Cow position:
               
chr28:33051786-33052167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
77, 130
               

               
Conread position:
               
199-579
               

               
Cow position:
               
chr28:3078912-3078549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
199-582
               

               
Cow position:
               
chr28:22321188-22321559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
368, 11
               

               
Conread position:
               
199-622
               

               
Cow position:
               
chr28:2898761-2899172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
375, 77
               

               
Conread position:
               
199-648
               

               
Cow position:
               
chr28:22308424-22308844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
199-659
               

               
Cow position:
               
chr28:26340102-26340545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
199-663
               

               
Cow position:
               
chr28:21502161-21502597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
199-671
               

               
Cow position:
               
chr28:12964343-12964805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
211, 48
               

               
Conread position:
               
200-338
               

               
Cow position:
               
chr28:8372237-8372374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
200-469
               

               
Cow position:
               
chr28:15063572-15063311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
200-469
               

               
Cow position:
               
chr28:25563843-25564111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
210, 128
               

               
Conread position:
               
200-504
               

               
Cow position:
               
chr28:7751534-7751240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
224, 137
               

               
Conread position:
               
200-666
               

               
Cow position:
               
chr28:4308131-4307673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 20
               

               
Conread position:
               
200-666
               

               
Cow position:
               
chr28:11426778-11426330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
200-683
               

               
Cow position:
               
chr28:14151001-14151465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
363, 83
               

               
Conread position:
               
201-456
               

               
Cow position:
               
chr28:7590414-7590168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
7, 12
               

               
Conread position:
               
201-512
               

               
Cow position:
               
chr28:25282974-25283263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
201-608
               

               
Cow position:
               
chr28:26533310-26533706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
199, 0
               

               
Conread position:
               
202-475
               

               
Cow position:
               
chr28:7606996-7607268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
211, 126
               

               
Conread position:
               
202-629
               

               
Cow position:
               
chr28:12430378-12430788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 76
               

               
Conread position:
               
202-650
               

               
Cow position:
               
chr28:25056742-25057158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
151, 12
               

               
Conread position:
               
202-672
               

               
Cow position:
               
chr28:5144754-5144288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 72
               

               
Conread position:
               
203-412
               

               
Cow position:
               
chr28:15007934-15008133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
184, 46
               

               
Conread position:
               
203-472
               

               
Cow position:
               
chr28:26269102-26269360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
172, 9
               

               
Conread position:
               
203-535
               

               
Cow position:
               
chr28:8408509-8408826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
203-560
               

               
Cow position:
               
chr28:23007957-23007613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
203-579
               

               
Cow position:
               
chr28:14649118-14649477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
209, 66
               

               
Conread position:
               
203-586
               

               
Cow position:
               
chr28:5366359-5365980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
160, 9
               

               
Conread position:
               
203-617
               

               
Cow position:
               
chr28:18624992-18625406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 362
               

               
Conread position:
               
203-649
               

               
Cow position:
               
chr28:9099704-9100129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 108
               

               
Conread position:
               
203-655
               

               
Cow position:
               
chr28:12598113-12598543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
16, 127
               

               
Conread position:
               
204-458
               

               
Cow position:
               
chr28:9390594-9390348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
175, 76
               

               
Conread position:
               
204-579
               

               
Cow position:
               
chr28:7684907-7684568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
204-683
               

               
Cow position:
               
chr28:750997-751462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
205-565
               

               
Cow position:
               
chr28:33163696-33163341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
208, 120
               

               
Conread position:
               
206-629
               

               
Cow position:
               
chr28:30303422-30303027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
255, 25
               

               
Conread position:
               
206-653
               

               
Cow position:
               
chr28:25727151-25727573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
212, 6
               

               
Conread position:
               
207-683
               

               
Cow position:
               
chr28:25701087-25700633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
209, 26
               

               
Conread position:
               
212-419
               

               
Cow position:
               
chr28:11827272-11827466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
212-549
               

               
Cow position:
               
chr28:7228607-7228283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
213-494
               

               
Cow position:
               
chr28:18717343-18717079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 70
               

               
Conread position:
               
213-578
               

               
Cow position:
               
chr28:26684892-26685248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
211, 110
               

               
Conread position:
               
214-382
               

               
Cow position:
               
chr28:7980638-7980473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
214-461
               

               
Cow position:
               
chr28:10478563-10478325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
7, 79
               

               
Conread position:
               
214-573
               

               
Cow position:
               
chr28:31248627-31248977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
214-615
               

               
Cow position:
               
chr28:31648854-31649239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
149, 68
               

               
Conread position:
               
214-676
               

               
Cow position:
               
chr28:10053558-10053104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
214-682
               

               
Cow position:
               
chr28:8347515-8347967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
215-505
               

               
Cow position:
               
chr28:2738030-2737744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
207, 110
               

               
Conread position:
               
215-670
               

               
Cow position:
               
chr28:25973311-25973764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
192, 113
               

               
Conread position:
               
220-653
               

               
Cow position:
               
chr28:1837777-1838201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
141, 61
               

               
Conread position:
               
221-503
               

               
Cow position:
               
chr28:3256581-3256858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
221-580
               

               
Cow position:
               
chr28:12946725-12947086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
59, 168
               

               
Conread position:
               
222-675
               

               
Cow position:
               
chr28:11818172-11817717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
295, 70
               

               
Conread position:
               
223-659
               

               
Cow position:
               
chr28:29416927-29416514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
194, 102
               

               
Conread position:
               
224-652
               

               
Cow position:
               
chr28:5437301-5436882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
120, 101
               

               
Conread position:
               
224-665
               

               
Cow position:
               
chr28:4884476-4884036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
160, 101
               

               
Conread position:
               
227-507
               

               
Cow position:
               
chr28:3714595-3714865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
109, 66
               

               
Conread position:
               
228-460
               

               
Cow position:
               
chr28:22739595-22739809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
229-679
               

               
Cow position:
               
chr28:19054812-19055248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
196, 62
               

               
Conread position:
               
230-671
               

               
Cow position:
               
chr28:12400005-12400462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
233-651
               

               
Cow position:
               
chr28:5224512-5224907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
376, 60
               

               
Conread position:
               
234-677
               

               
Cow position:
               
chr28:27313948-27313500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 157
               

               
Conread position:
               
235-630
               

               
Cow position:
               
chr28:4138868-4138485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 56
               

               
Conread position:
               
235-666
               

               
Cow position:
               
chr28:4158753-4159182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 96
               

               
Conread position:
               
235-678
               

               
Cow position:
               
chr28:10844920-10845333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
228, 54
               

               
Conread position:
               
238-570
               

               
Cow position:
               
chr28:7416204-7415883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
228, 35
               

               
Conread position:
               
239-619
               

               
Cow position:
               
chr28:4881440-4881072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
240-652
               

               
Cow position:
               
chr28:4643961-4643566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
240-682
               

               
Cow position:
               
chr28:16416448-16416873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
241-643
               

               
Cow position:
               
chr28:4835038-4834648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
171, 84
               

               
Conread position:
               
242-683
               

               
Cow position:
               
chr28:26982938-26982499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 175
               

               
Conread position:
               
246-460
               

               
Cow position:
               
chr28:118243-118033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
248-460
               

               
Cow position:
               
chr28:19023947-19024162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
248-676
               

               
Cow position:
               
chr28:11866855-11866440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 81
               

               
Conread position:
               
256-579
               

               
Cow position:
               
chr28:2752678-2752358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
74, 49
               

               
Conread position:
               
265-579
               

               
Cow position:
               
chr28:2132091-2131788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
148, 46
               

               
Conread position:
               
265-673
               

               
Cow position:
               
chr28:3406602-3406188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
154, 63
               

               
Conread position:
               
265-677
               

               
Cow position:
               
chr28:11798974-11798547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 63
               

               
Conread position:
               
267-665
               

               
Cow position:
               
chr28:11829109-11828742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
6, 62
               

               
Conread position:
               
268-622
               

               
Cow position:
               
chr28:21363576-21363917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
7, 57
               

               
Conread position:
               
268-648
               

               
Cow position:
               
chr28:20409222-20409591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
5, 58
               

               
Conread position:
               
268-678
               

               
Cow position:
               
chr28:1632823-1632422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
272-479
               

               
Cow position:
               
chr28:28903833-28903627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
144, 30
               

               
Conread position:
               
273-556
               

               
Cow position:
               
chr28:32365681-32365956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 21
               

               
Conread position:
               
277-579
               

               
Cow position:
               
chr28:25806411-25806699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
277-652
               

               
Cow position:
               
chr28:4440143-4440503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
280-679
               

               
Cow position:
               
chr28:8358747-8359133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
368, 21
               

               
Conread position:
               
284-469
               

               
Cow position:
               
chr28:7608133-7607950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 44
               

               
Conread position:
               
291-652
               

               
Cow position:
               
chr28:7009120-7008777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
293-652
               

               
Cow position:
               
chr28:10057736-10057383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
305, 121
               

               
Conread position:
               
294-586
               

               
Cow position:
               
chr28:4355405-4355689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
42, 77
               

               
Conread position:
               
298-653
               

               
Cow position:
               
chr28:2774924-2775255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
298-681
               

               
Cow position:
               
chr28:9812144-9812512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
125, 39
               

               
Conread position:
               
301-659
               

               
Cow position:
               
chr28:19262725-19262373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 25
               

               
Conread position:
               
303-652
               

               
Cow position:
               
chr28:11346619-11346285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
254, 37
               

               
Conread position:
               
304-683
               

               
Cow position:
               
chr28:27161465-27161077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
305-591
               

               
Cow position:
               
chr28:25728066-25728337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
305-615
               

               
Cow position:
               
chr28:1538036-1538335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
260, 70
               

               
Conread position:
               
305-648
               

               
Cow position:
               
chr28:24082135-24082470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
96, 23
               

               
Conread position:
               
305-652
               

               
Cow position:
               
chr28:8140350-8140688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
315-665
               

               
Cow position:
               
chr28:32593772-32593417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
102, 28
               

               
Conread position:
               
324-566
               

               
Cow position:
               
chr28:5166649-5166890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
325-615
               

               
Cow position:
               
chr28:23447939-23447660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
182, 77
               

               
Conread position:
               
325-648
               

               
Cow position:
               
chr28:19564343-19564035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
325-652
               

               
Cow position:
               
chr28:7372237-7371906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
240, 78
               

               
Conread position:
               
325-659
               

               
Cow position:
               
chr28:3011388-3011055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 66
               

               
Conread position:
               
327-629
               

               
Cow position:
               
chr28:18370121-18369832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
95, 87
               

               
Conread position:
               
327-665
               

               
Cow position:
               
chr28:12933844-12933519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
161, 74
               

               
Conread position:
               
328-668
               

               
Cow position:
               
chr28:11762586-11762919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
172, 10
               

               
Conread position:
               
328-673
               

               
Cow position:
               
chr28:3484465-3484812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
92, 129
               

               
Conread position:
               
329-664
               

               
Cow position:
               
chr28:12672572-12672245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
205, 29
               

               
Conread position:
               
329-669
               

               
Cow position:
               
chr28:23296212-23296540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
329-671
               

               
Cow position:
               
chr28:5199711-5200050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
137, 85
               

               
Conread position:
               
331-629
               

               
Cow position:
               
chr28:12363270-12362979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 73
               

               
Conread position:
               
331-629
               

               
Cow position:
               
chr28:26055366-26055659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
72, 247
               

               
Conread position:
               
338-675
               

               
Cow position:
               
chr28:6358512-6358186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
220, 20
               

               
Conread position:
               
341-640
               

               
Cow position:
               
chr28:17071235-17071532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
52, 6
               

               
Conread position:
               
350-622
               

               
Cow position:
               
chr28:11559724-11559459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
359-622
               

               
Cow position:
               
chr28:2523859-2524119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
48, 42
               

               
Conread position:
               
359-641
               

               
Cow position:
               
chr28:4045771-4046037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
359-652
               

               
Cow position:
               
chr28:4181922-4182205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
359-683
               

               
Cow position:
               
chr28:13245478-13245794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
363-578
               

               
Cow position:
               
chr28:13090604-13090391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
369-652
               

               
Cow position:
               
chr28:12662473-12662186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
383-652
               

               
Cow position:
               
chr28:19361680-19361943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
383-666
               

               
Cow position:
               
chr28:7619210-7618942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
383-678
               

               
Cow position:
               
chr28:18847492-18847792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
79, 21
               

               
Conread position:
               
383-684
               

               
Cow position:
               
chr28:6935240-6934940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
25, 20
               

               
Conread position:
               
386-679
               

               
Cow position:
               
chr28:5235826-5236106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
390-574
               

               
Cow position:
               
chr28:17601603-17601423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
390-677
               

               
Cow position:
               
chr28:11059452-11059721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
260, 13
               

               
Conread position:
               
391-683
               

               
Cow position:
               
chr28:13527147-13527436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
392-652
               

               
Cow position:
               
chr28:34843623-34843368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
392-653
               

               
Cow position:
               
chr28:3726262-3726003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
392-664
               

               
Cow position:
               
chr28:11815127-11814863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
114, 23
               

               
Conread position:
               
393-638
               

               
Cow position:
               
chr28:20397418-20397176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
228, 23
               

               
Conread position:
               
401-678
               

               
Cow position:
               
chr28:12088691-12088411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 162
               

               
Conread position:
               
403-656
               

               
Cow position:
               
chr28:6283525-6283282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
85, 5
               

               
Conread position:
               
404-652
               

               
Cow position:
               
chr28:17680584-17680829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
406-668
               

               
Cow position:
               
chr28:13371174-13370920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 10
               

               
Conread position:
               
407-658
               

               
Cow position:
               
chr28:17739787-17740035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
408-652
               

               
Cow position:
               
chr28:8827130-8827368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
128, 55
               

               
Conread position:
               
410-646
               

               
Cow position:
               
chr28:27721670-27721894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
410-663
               

               
Cow position:
               
chr28:2933461-2933210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 18
               

               
Conread position:
               
410-681
               

               
Cow position:
               
chr28:15362545-15362810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
22, 168
               

               
Conread position:
               
412-652
               

               
Cow position:
               
chr28:118578-118818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
122, 177
               

               
Conread position:
               
415-652
               

               
Cow position:
               
chr28:11307547-11307314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 168
               

               
Conread position:
               
415-683
               

               
Cow position:
               
chr28:2077462-2077731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
40, 170
               

               
Conread position:
               
417-573
               

               
Cow position:
               
chr28:23047594-23047748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
417-659
               

               
Cow position:
               
chr28:4185881-4186114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
417-673
               

               
Cow position:
               
chr28:21008691-21008446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
417-675
               

               
Cow position:
               
chr28:5630072-5630325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
417-676
               

               
Cow position:
               
chr28:23262479-23262223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
417-676
               

               
Cow position:
               
chr28:26264801-26265057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
417-684
               

               
Cow position:
               
chr28:33561337-33561598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
36, 132
               

               
Conread position:
               
418-652
               

               
Cow position:
               
chr28:7571951-7571722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
7, 121
               

               
Conread position:
               
420-647
               

               
Cow position:
               
chr28:32357276-32357507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 45
               

               
Conread position:
               
420-667
               

               
Cow position:
               
chr28:5231915-5232157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
210, 127
               

               
Conread position:
               
421-652
               

               
Cow position:
               
chr28:10495320-10495096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
421-652
               

               
Cow position:
               
chr28:10958771-10959003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
54, 10
               

               
Conread position:
               
421-673
               

               
Cow position:
               
chr28:4937264-4937012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
228, 161
               

               
Conread position:
               
421-675
               

               
Cow position:
               
chr28:13133610-13133862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
421-681
               

               
Cow position:
               
chr28:11743841-11743597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
421-684
               

               
Cow position:
               
chr28:26944180-26943913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
82, 130
               

               
Conread position:
               
422-579
               

               
Cow position:
               
chr28:8149653-8149496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
422-652
               

               
Cow position:
               
chr28:11398818-11398590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
422-675
               

               
Cow position:
               
chr28:3200438-3200686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
425-648
               

               
Cow position:
               
chr28:7014435-7014654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
425-677
               

               
Cow position:
               
chr28:11197688-11197444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
425-682
               

               
Cow position:
               
chr28:19128187-19127937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
226, 82
               

               
Conread position:
               
431-648
               

               
Cow position:
               
chr28:8259616-8259832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
126, 151
               

               
Conread position:
               
431-678
               

               
Cow position:
               
chr28:20173824-20174067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 103
               

               
Conread position:
               
431-679
               

               
Cow position:
               
chr28:13048295-13048059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
432-681
               

               
Cow position:
               
chr28:1531996-1532237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
433-628
               

               
Cow position:
               
chr28:8112284-8112090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
433-675
               

               
Cow position:
               
chr28:26810669-26810907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
434-580
               

               
Cow position:
               
chr28:30081733-30081588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
434-648
               

               
Cow position:
               
chr28:5188438-5188229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 143
               

               
Conread position:
               
435-676
               

               
Cow position:
               
chr28:18797312-18797536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
440-671
               

               
Cow position:
               
chr28:8716391-8716157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
440-674
               

               
Cow position:
               
chr28:4163582-4163354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
441-657
               

               
Cow position:
               
chr28:6321815-6322028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
155, 88
               

               
Conread position:
               
441-670
               

               
Cow position:
               
chr28:11411538-11411316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
441-671
               

               
Cow position:
               
chr28:6563900-6563671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 141
               

               
Conread position:
               
441-674
               

               
Cow position:
               
chr28:5673873-5674097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 132
               

               
Conread position:
               
442-629
               

               
Cow position:
               
chr28:18608369-18608184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
442-653
               

               
Cow position:
               
chr28:12973880-12974091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
206, 141
               

               
Conread position:
               
443-648
               

               
Cow position:
               
chr28:19039019-19038818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
445-649
               

               
Cow position:
               
chr28:14242695-14242897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 115
               

               
Conread position:
               
446-676
               

               
Cow position:
               
chr28:13356370-13356138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
446-683
               

               
Cow position:
               
chr28:26826220-26826461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
447-666
               

               
Cow position:
               
chr28:4073973-4074196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
450-579
               

               
Cow position:
               
chr28:2743088-2743218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
450-620
               

               
Cow position:
               
chr28:4022680-4022848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
450-652
               

               
Cow position:
               
chr28:117756-117554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
81, 132
               

               
Conread position:
               
450-652
               

               
Cow position:
               
chr28:25827724-25827524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
450-656
               

               
Cow position:
               
chr28:10480804-10480593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
450-667
               

               
Cow position:
               
chr28:19994939-19994727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
104, 31
               

               
Conread position:
               
451-680
               

               
Cow position:
               
chr28:17656427-17656654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
197, 118
               

               
Conread position:
               
453-678
               

               
Cow position:
               
chr28:5403032-5402812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
198, 10
               

               
Conread position:
               
454-648
               

               
Cow position:
               
chr28:20968569-20968376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
454-676
               

               
Cow position:
               
chr28:26820265-26820046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
196, 9
               

               
Conread position:
               
454-681
               

               
Cow position:
               
chr28:32014795-32015013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
456-652
               

               
Cow position:
               
chr28:17738142-17737946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
30, 128
               

               
Conread position:
               
456-675
               

               
Cow position:
               
chr28:659282-659063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
120, 201
               

               
Conread position:
               
458-672
               

               
Cow position:
               
chr28:11827703-11827915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
186, 24
               

               
Conread position:
               
459-654
               

               
Cow position:
               
chr28:7644756-7644947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 66
               

               
Conread position:
               
459-671
               

               
Cow position:
               
chr28:2825435-2825645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
191, 106
               

               
Conread position:
               
460-651
               

               
Cow position:
               
chr28:8898061-8898257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
97, 84
               

               
Conread position:
               
460-673
               

               
Cow position:
               
chr28:22085525-22085320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
461-672
               

               
Cow position:
               
chr28:7885047-7885257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 130
               

               
Conread position:
               
461-683
               

               
Cow position:
               
chr28:17620342-17620120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
187, 30
               

               
Conread position:
               
462-640
               

               
Cow position:
               
chr28:13160527-13160351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
462-656
               

               
Cow position:
               
chr28:27445554-27445367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
86, 114
               

               
Conread position:
               
462-666
               

               
Cow position:
               
chr28:1655075-1654872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 121
               

               
Conread position:
               
462-666
               

               
Cow position:
               
chr28:10196846-10196651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
188, 95
               

               
Conread position:
               
462-683
               

               
Cow position:
               
chr28:7413678-7413899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
190, 107
               

               
Conread position:
               
462-683
               

               
Cow position:
               
chr28:18474666-18474886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
462-684
               

               
Cow position:
               
chr28:3423796-3424013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
462-684
               

               
Cow position:
               
chr28:21765974-21766190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
463-666
               

               
Cow position:
               
chr28:5552695-5552490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
125, 99
               

               
Conread position:
               
464-652
               

               
Cow position:
               
chr28:5609896-5609714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
464-666
               

               
Cow position:
               
chr28:12628757-12628957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
185, 116
               

               
Conread position:
               
465-656
               

               
Cow position:
               
chr28:28602774-28602962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
186, 116
               

               
Conread position:
               
465-677
               

               
Cow position:
               
chr28:1178302-1178088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
465-682
               

               
Cow position:
               
chr28:2892274-2892489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
95, 118
               

               
Conread position:
               
467-646
               

               
Cow position:
               
chr28:4870781-4870598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
89, 104
               

               
Conread position:
               
468-681
               

               
Cow position:
               
chr28:10252892-10252682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
470-674
               

               
Cow position:
               
chr28:21744742-21744938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
472-622
               

               
Cow position:
               
chr28:3729990-3729843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
478-663
               

               
Cow position:
               
chr28:16857072-16856891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
482-678
               

               
Cow position:
               
chr28:34830193-34830385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
168, 99
               

               
Conread position:
               
483-651
               

               
Cow position:
               
chr28:30385192-30385358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
484-661
               

               
Cow position:
               
chr28:8656125-8655953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
484-666
               

               
Cow position:
               
chr28:16200702-16200524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
484-680
               

               
Cow position:
               
chr28:29500441-29500638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
78, 179
               

               
Conread position:
               
484-681
               

               
Cow position:
               
chr28:6301122-6301317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
486-656
               

               
Cow position:
               
chr28:11562203-11562035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
491-667
               

               
Cow position:
               
chr28:13195703-13195531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
491-667
               

               
Cow position:
               
chr28:32284192-32284020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 23
               

               
Conread position:
               
491-676
               

               
Cow position:
               
chr28:24698738-24698922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
159, 95
               

               
Conread position:
               
491-683
               

               
Cow position:
               
chr28:4230859-4231047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
159, 53
               

               
Conread position:
               
492-652
               

               
Cow position:
               
chr28:3494404-3494565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
493-659
               

               
Cow position:
               
chr28:7503928-7504093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
158, 51
               

               
Conread position:
               
496-654
               

               
Cow position:
               
chr28:4077293-4077131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
496-659
               

               
Cow position:
               
chr28:15295289-15295449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
135, 79
               

               
Conread position:
               
496-664
               

               
Cow position:
               
chr28:21263210-21263369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
496-674
               

               
Cow position:
               
chr28:30922007-30921832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
499-678
               

               
Cow position:
               
chr28:3311168-3310990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
147, 82
               

               
Conread position:
               
499-683
               

               
Cow position:
               
chr28:24767460-24767644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 83
               

               
Conread position:
               
509-649
               

               
Cow position:
               
chr28:22278566-22278424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
509-674
               

               
Cow position:
               
chr28:14947780-14947941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 35
               

               
Conread position:
               
519-669
               

               
Cow position:
               
chr28:8165140-8164993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
521-682
               

               
Cow position:
               
chr28:16964889-16964730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
525-672
               

               
Cow position:
               
chr28:18761928-18761785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
527-666
               

               
Cow position:
               
chr28:10896319-10896460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
527-674
               

               
Cow position:
               
chr28:14983069-14982925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 6
               
Show alignments to all cow chromosomes.